func makeCyBio() *liquidhandling.LHProperties {
tips := GetTipList()
layout := make(map[string]wtype.Coordinates)
for i := 0; i < 12; i++ {
posname := fmt.Sprintf("position_%d", i+1)
// dont know coords for this yet
var crds wtype.Coordinates
layout[posname] = crds
}
lhp := liquidhandling.NewLHProperties(12, "Felix", "CyBio", "discrete", "disposable", layout)
for _, tt := range tips {
tb := GetTipByType(tt)
if tb.Mnfr == lhp.Mnfr {
lhp.Tips = append(lhp.Tips, tb.Tips[0][0])
}
}
lhp.Tip_preferences = []int{1, 5, 3}
lhp.Input_preferences = []int{10, 11, 12}
lhp.Output_preferences = []int{7, 8, 9, 2, 4}
minvol := wunit.NewVolume(10, "ul")
maxvol := wunit.NewVolume(1000, "ul")
minspd := wunit.NewFlowRate(0.5, "ml/min")
maxspd := wunit.NewFlowRate(2, "ml/min")
hvconfig := wtype.NewLHChannelParameter("HVconfig", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
hvadaptor := wtype.NewLHAdaptor("HVAdaptor", "CyBio", hvconfig)
minvol = wunit.NewVolume(0.5, "ul")
maxvol = wunit.NewVolume(50, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
lvconfig := wtype.NewLHChannelParameter("LVconfig", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
lvadaptor := wtype.NewLHAdaptor("LVAdaptor", "CyBio", lvconfig)
minvol = wunit.NewVolume(0.5, "ul")
maxvol = wunit.NewVolume(1000, "ul")
headparams := wtype.NewLHChannelParameter("ChoiceHead", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
head := wtype.NewLHHead("ChoiceHead", "CyBio", headparams)
head.Adaptor = hvadaptor
lhp.Adaptors = append(lhp.Adaptors, hvadaptor)
lhp.Adaptors = append(lhp.Adaptors, lvadaptor)
lhp.Heads = append(lhp.Heads, head)
lhp.HeadsLoaded = append(lhp.HeadsLoaded, head)
return lhp
}
func makeManual() *liquidhandling.LHProperties {
// tips := GetTipList()
// dummy layout of 25 positions... arbitrary limitation
x := 0.0
y := 0.0
z := 0.0
xinc := 100.0
yinc := 100.0
i := 0
layout := make(map[string]wtype.Coordinates)
for xi := 0; xi < 5; xi++ {
for yi := 0; yi < 5; yi++ {
posname := fmt.Sprintf("position_%d", i+1)
crds := wtype.Coordinates{x, y, z}
layout[posname] = crds
i += 1
y += yinc
}
x += xinc
}
lhp := liquidhandling.NewLHProperties(25, "Human", "MotherNature", "discrete", "disposable", layout)
SetUpTipsFor(lhp)
lhp.Tip_preferences = []string{"tips1", "tips2", "tips3", "tips4"}
lhp.Input_preferences = []string{"in1", "in2", "in3", "in4"}
lhp.Output_preferences = []string{"out1", "out2", "out3", "out4"}
lhp.Tipwaste_preferences = []string{"tip_waste"}
lhp.Wash_preferences = []string{"tip_wash"}
lhp.Waste_preferences = []string{"liquid_waste"}
adaptors := make([]*wtype.LHAdaptor, 0, 1)
minvol := wunit.NewVolume(200, "ul")
maxvol := wunit.NewVolume(1000, "ul")
minspd := wunit.NewFlowRate(0.5, "ml/min")
maxspd := wunit.NewFlowRate(2, "ml/min")
hvconfig := wtype.NewLHChannelParameter("P1000Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
hvadaptor := wtype.NewLHAdaptor("P1000", "Gilson", hvconfig)
adaptors = append(adaptors, hvadaptor)
minvol = wunit.NewVolume(50, "ul")
maxvol = wunit.NewVolume(200, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
mvconfig := wtype.NewLHChannelParameter("P200Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
mvadaptor := wtype.NewLHAdaptor("P200", "Gilson", mvconfig)
adaptors = append(adaptors, mvadaptor)
minvol = wunit.NewVolume(2, "ul")
maxvol = wunit.NewVolume(20, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
lmvconfig := wtype.NewLHChannelParameter("P20Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
lmvadaptor := wtype.NewLHAdaptor("P20", "Gilson", lmvconfig)
adaptors = append(adaptors, lmvadaptor)
minvol = wunit.NewVolume(1, "ul")
maxvol = wunit.NewVolume(10, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
lvconfig := wtype.NewLHChannelParameter("P10Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
lvadaptor := wtype.NewLHAdaptor("P10", "Gilson", lvconfig)
adaptors = append(adaptors, lvadaptor)
minvol = wunit.NewVolume(0.2, "ul")
maxvol = wunit.NewVolume(2, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
vlvconfig := wtype.NewLHChannelParameter("P2Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
vlvadaptor := wtype.NewLHAdaptor("P2", "Gilson", vlvconfig)
adaptors = append(adaptors, vlvadaptor)
//minvol = wunit.NewVolume(0.2, "ul")
//maxvol = wunit.NewVolume(5000, "ul")
for i, adaptor := range adaptors {
maxvol = adaptor.Params.Maxvol
minvol = adaptor.Params.Minvol
maxspd = adaptor.Params.Maxspd
minspd = adaptor.Params.Minspd
headparams := wtype.NewLHChannelParameter(fmt.Sprintf("LabHand_%d", i+1), "MotherNature", minvol, maxvol, minspd, maxspd, 8, false, wtype.LHVChannel, 0)
head := wtype.NewLHHead(fmt.Sprintf("LabHand_%d", i+1), "MotherNature", headparams)
head.Adaptor = adaptor
lhp.Heads = append(lhp.Heads, head)
lhp.HeadsLoaded = append(lhp.HeadsLoaded, head)
}
// lhp.Adaptors = append(lhp.Adaptors, hvadaptor)
// lhp.Adaptors = append(lhp.Adaptors, mvadaptor)
// lhp.Adaptors = append(lhp.Adaptors, lmvadaptor)
// lhp.Adaptors = append(lhp.Adaptors, lvadaptor)
// lhp.Adaptors = append(lhp.Adaptors, vlvadaptor)
return lhp
}
func makeManual() *liquidhandling.LHProperties {
// tips := GetTipList()
// dummy layout of 25 positions... arbitrary limitation
x := 0.0
y := 0.0
z := 0.0
xinc := 100.0
yinc := 100.0
i := 0
layout := make(map[string]wtype.Coordinates)
for xi := 0; xi < 5; xi++ {
for yi := 0; yi < 5; yi++ {
posname := fmt.Sprintf("position_%d", i+1)
crds := wtype.Coordinates{x, y, z}
layout[posname] = crds
i += 1
y += yinc
}
x += xinc
}
lhp := liquidhandling.NewLHProperties(25, "Human", "MotherNature", "discrete", "disposable", layout)
lhp.Tip_preferences = []int{2, 3, 4, 5, 6}
lhp.Input_preferences = []int{7, 8, 9, 10, 11, 12, 13, 14, 15}
lhp.Output_preferences = []int{16, 17, 18, 19, 20, 21, 22, 23, 24, 25}
minvol := wunit.NewVolume(200, "ul")
maxvol := wunit.NewVolume(1000, "ul")
minspd := wunit.NewFlowRate(0.5, "ml/min")
maxspd := wunit.NewFlowRate(2, "ml/min")
hvconfig := wtype.NewLHChannelParameter("P1000Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
hvadaptor := wtype.NewLHAdaptor("P1000", "Gilson", hvconfig)
minvol = wunit.NewVolume(50, "ul")
maxvol = wunit.NewVolume(200, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
mvconfig := wtype.NewLHChannelParameter("P200Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
mvadaptor := wtype.NewLHAdaptor("P200", "Gilson", mvconfig)
minvol = wunit.NewVolume(2, "ul")
maxvol = wunit.NewVolume(20, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
lmvconfig := wtype.NewLHChannelParameter("P20Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
lmvadaptor := wtype.NewLHAdaptor("P20", "Gilson", lmvconfig)
minvol = wunit.NewVolume(1, "ul")
maxvol = wunit.NewVolume(10, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
lvconfig := wtype.NewLHChannelParameter("P10Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
lvadaptor := wtype.NewLHAdaptor("P10", "Gilson", lvconfig)
minvol = wunit.NewVolume(0.2, "ul")
maxvol = wunit.NewVolume(2, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
vlvconfig := wtype.NewLHChannelParameter("P2Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
vlvadaptor := wtype.NewLHAdaptor("P2", "Gilson", vlvconfig)
minvol = wunit.NewVolume(0.2, "ul")
maxvol = wunit.NewVolume(5000, "ul")
headparams := wtype.NewLHChannelParameter("LabHand", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
head := wtype.NewLHHead("LabHand", "MotherNature", headparams)
head.Adaptor = hvadaptor
lhp.Adaptors = append(lhp.Adaptors, hvadaptor)
lhp.Adaptors = append(lhp.Adaptors, mvadaptor)
lhp.Adaptors = append(lhp.Adaptors, lmvadaptor)
lhp.Adaptors = append(lhp.Adaptors, lvadaptor)
lhp.Adaptors = append(lhp.Adaptors, vlvadaptor)
lhp.Heads = append(lhp.Heads, head)
lhp.HeadsLoaded = append(lhp.HeadsLoaded, head)
return lhp
}
func makeGilson() *liquidhandling.LHProperties {
// gilson pipetmax
tips := GetTipList()
layout := make(map[string]wtype.Coordinates)
i := 0
x0 := 3.886
y0 := 3.513
z0 := -82.035
xi := 149.86
yi := 95.25
xp := x0
yp := y0
zp := z0
for y := 0; y < 3; y++ {
for x := 0; x < 3; x++ {
posname := fmt.Sprintf("position_%d", i+1)
crds := wtype.Coordinates{xp, yp, zp}
layout[posname] = crds
i += 1
xp += xi
}
yp += yi
}
lhp := liquidhandling.NewLHProperties(9, "Pipetmax", "Gilson", "discrete", "disposable", layout)
for _, tt := range tips {
tb := GetTipByType(tt)
if tb.Mnfr == lhp.Mnfr {
lhp.Tips = append(lhp.Tips, tb.Tips[0][0])
}
}
lhp.Tip_preferences = []int{2, 3, 4}
lhp.Input_preferences = []int{4, 5, 6}
lhp.Output_preferences = []int{7, 8, 9}
minvol := wunit.NewVolume(10, "ul")
maxvol := wunit.NewVolume(250, "ul")
minspd := wunit.NewFlowRate(0.5, "ml/min")
maxspd := wunit.NewFlowRate(2, "ml/min")
hvconfig := wtype.NewLHChannelParameter("HVconfig", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
hvadaptor := wtype.NewLHAdaptor("DummyAdaptor", "Gilson", hvconfig)
hvhead := wtype.NewLHHead("HVHead", "Gilson", hvconfig)
hvhead.Adaptor = hvadaptor
minvol = wunit.NewVolume(0.5, "ul")
maxvol = wunit.NewVolume(50, "ul")
minspd = wunit.NewFlowRate(0.1, "ml/min")
maxspd = wunit.NewFlowRate(0.5, "ml/min")
lvconfig := wtype.NewLHChannelParameter("LVconfig", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 1)
lvadaptor := wtype.NewLHAdaptor("DummyAdaptor", "Gilson", lvconfig)
lvhead := wtype.NewLHHead("LVHead", "Gilson", lvconfig)
lvhead.Adaptor = lvadaptor
lhp.Heads = append(lhp.Heads, hvhead)
lhp.Heads = append(lhp.Heads, lvhead)
lhp.HeadsLoaded = append(lhp.HeadsLoaded, hvhead)
lhp.HeadsLoaded = append(lhp.HeadsLoaded, lvhead)
return lhp
}