PyMOL plugins with goChem!

A framework to develop PyMOL plugins using Gochem library.
(https://www.github.com/rmera/gochem). A PyMOL plugin executes a 
Go/goChem program using JSON to communicates with it via stdin/stdout.

The plugins currently implemented by us are the following:

goQM: Given one or more selections and a method/program (see help in the plugin),
will run DFT or semiempirical geometry optimization or single-point calculation
on the selection/s given. It will cut selections (only sidechains or including 
backbone, as the user chooses) and saturate the cut bonds in a sensible way. 
the resulting Energy will be printed and the resulting geometry, if applicable,
will be loaded ini PyMOL

goRama: Given one or more PyMOL selections, it will produce Ramachandran plots.
If several selections are given, it will assign a different color to each, if not,
the colors will progress from red to violet following the aminoacidic sequence.


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There is no publication on goChem yet. If you use one of the plugins here,
or any program based on goChem before such a publication is available,
we ask you to support goChem by citing the library in your publication as:

Mera-Adasme, R., Savasci, G., Pesonen, J. "goChem: A library for computational 
chemistry". https://www.github.com/rmera/gochem

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Note: The developers of goChem and the Go plugins for PyMOL are not associated
with PyMOL in any way.