This is a source repository for docker image to run Chado-sqitch software.

By default, running this container will try to install chado schema into a postgres database. To work with the database, it needs another linked container and bunch of environmental variables.

$CHADO_DB, $CHADO_PASS and $CHADO_USER for the database credentials. For kubernetes, it can be mounted through /secrets through three files, chadodb, chadopass and chadouser.

For connecting to a postgres database, it needs two variables, CHADO_BACKEND_SERVICE_HOST and CHADO_BACKEND_SERVICE_PORT. It can be done in kubernetes by creating a service named postgres or as a standalone container, linked to a docker container named postgres_srv_service.

kubernetes can be used to deploy the containers.