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go-vcf-tools

filter

$ cat a.vcf| go-vcf filter --keep-ids ids.txt --keep-pos pos.txt

freq

$ cat a.vcf| go-vcf freq

subset

$ cat a.vcf| go-vcf subset --keep-index 0

to-tab

$ cat a.vcf| go-vcf to-tab

update

$ cat a.vcf| go-vcf update --rs-merge-arch RsMergeArch.bcp.gz

WIP: fill-rsids

$ cat a.vcf| go-vcf fill-rsids --bucket b142_GRCh37