func TestWriteRead(t *testing.T) {
initChainFB(t)
modelSet, e := NewSet(hmm0, hmm1)
fatalIf(t, e)
t.Log(modelSet)
fn := filepath.Join(os.TempDir(), "model_set.json")
ju.WriteJSONFile(fn, modelSet)
t.Logf("Wrote to temp file: %s\n", fn)
}
func TestWriteRead(t *testing.T) {
root := makeTree()
al := root.Alignment()
fn := filepath.Join(os.TempDir(), "align.json")
ju.WriteJSONFile(fn, al)
t.Logf("Wrote to temp file: %s\n", fn)
var al2 Alignment
ju.ReadJSONFile(fn, &al2)
t.Log(al2)
for level := range al {
if len(al[level]) != len(al2[level]) {
t.Fatalf("length for level [%d] does not match - expected %d, got %d", level, len(al[level]), len(al2[level]))
}
for i, a := range al[level] {
b := al2[level][i]
if a.Start != b.Start || a.End != b.End || a.Name != b.Name {
t.Fatalf("nodes don't match - expected %s, got %s", a, b)
}
}
}
}