Ejemplo n.º 1
0
// DataBySpec returns a ROI Data based on a string specification of the form
// "<roiname>,<uuid>". If the given string is not parsable, the "found" return value is false.
func DataBySpec(spec string) (d *Data, v dvid.VersionID, found bool, err error) {
	roispec := strings.Split(spec, ",")
	if len(roispec) != 2 {
		err = fmt.Errorf("Expect ROI filters to have format %q, but got %q", "roi:<roiname>,<uuid>", spec)
		return
	}
	roiName := dvid.InstanceName(roispec[0])
	_, v, err = datastore.MatchingUUID(roispec[1])
	if err != nil {
		return
	}
	var data datastore.DataService
	data, err = datastore.GetDataByVersionName(v, roiName)
	if err != nil {
		return
	}
	var ok bool
	d, ok = data.(*Data)
	if !ok {
		err = fmt.Errorf("Data instance %q is not ROI instance", roiName)
		return
	}
	found = true
	return
}
Ejemplo n.º 2
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// repoSelector retrieves the particular repo from a potentially partial string that uniquely
// identifies the repo.
func repoSelector(c *web.C, h http.Handler) http.Handler {
	fn := func(w http.ResponseWriter, r *http.Request) {
		action := strings.ToLower(r.Method)
		if readonly && action != "get" && action != "head" {
			BadRequest(w, r, "Server in read-only mode and will only accept GET and HEAD requests")
			return
		}

		var err error
		var uuid dvid.UUID
		if uuid, c.Env["versionID"], err = datastore.MatchingUUID(c.URLParams["uuid"]); err != nil {
			BadRequest(w, r, err)
			return
		}
		c.Env["uuid"] = uuid

		// Make sure locked nodes can't use anything besides GET and HEAD
		locked, err := datastore.LockedUUID(uuid)
		if err != nil {
			BadRequest(w, r, err)
			return
		}
		branchRequest := (c.URLParams["action"] == "branch")
		mergeRequest := (c.URLParams["action"] == "merge")
		if locked && !branchRequest && !mergeRequest && action != "get" && action != "head" {
			BadRequest(w, r, "Cannot do %s on locked node %s", action, uuid)
			return
		}

		h.ServeHTTP(w, r)
	}
	return http.HandlerFunc(fn)
}
Ejemplo n.º 3
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// put handles a PUT command-line request.
func (d *Data) put(cmd datastore.Request, reply *datastore.Response) error {
	if len(cmd.Command) < 5 {
		return fmt.Errorf("The key name must be specified after 'put'")
	}
	if len(cmd.Input) == 0 {
		return fmt.Errorf("No data was passed into standard input")
	}
	var uuidStr, dataName, cmdStr, keyStr string
	cmd.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &keyStr)

	_, versionID, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return err
	}

	// Store data
	if !d.Versioned() {
		// Map everything to root version.
		versionID, err = datastore.GetRepoRootVersion(versionID)
		if err != nil {
			return err
		}
	}
	ctx := datastore.NewVersionedCtx(d, versionID)
	if err = d.PutData(ctx, keyStr, cmd.Input); err != nil {
		return fmt.Errorf("Error on put to key %q for keyvalue %q: %v\n", keyStr, d.DataName(), err)
	}

	reply.Output = []byte(fmt.Sprintf("Put %d bytes into key %q for keyvalue %q, uuid %s\n",
		len(cmd.Input), keyStr, d.DataName(), uuidStr))
	return nil
}
Ejemplo n.º 4
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// DoRPC acts as a switchboard for RPC commands.
func (d *Data) DoRPC(req datastore.Request, reply *datastore.Response) error {
	switch req.TypeCommand() {
	case "load":
		if len(req.Command) < 5 {
			return fmt.Errorf("Poorly formatted load command.  See command-line help.")
		}
		// Parse the request
		var uuidStr, dataName, cmdStr, offsetStr string
		filenames, err := req.FilenameArgs(1, &uuidStr, &dataName, &cmdStr, &offsetStr)
		if err != nil {
			return err
		}
		if len(filenames) == 0 {
			return fmt.Errorf("Need to include at least one file to add: %s", req)
		}

		// Get offset
		offset, err := dvid.StringToPoint(offsetStr, ",")
		if err != nil {
			return fmt.Errorf("Illegal offset specification: %s: %v", offsetStr, err)
		}

		// Get list of files to add
		var addedFiles string
		if len(filenames) == 1 {
			addedFiles = filenames[0]
		} else {
			addedFiles = fmt.Sprintf("filenames: %s [%d more]", filenames[0], len(filenames)-1)
		}
		dvid.Debugf(addedFiles + "\n")

		uuid, versionID, err := datastore.MatchingUUID(uuidStr)
		if err != nil {
			return err
		}
		if err = datastore.AddToNodeLog(uuid, []string{req.Command.String()}); err != nil {
			return err
		}
		if err = d.LoadImages(versionID, offset, filenames); err != nil {
			return err
		}
		if err := datastore.SaveDataByUUID(uuid, d); err != nil {
			return err
		}
		return nil

	case "composite":
		if len(req.Command) < 6 {
			return fmt.Errorf("Poorly formatted composite command.  See command-line help.")
		}
		return d.CreateComposite(req, reply)

	default:
		return fmt.Errorf("Unknown command.  Data type '%s' [%s] does not support '%s' command.",
			d.DataName(), d.TypeName(), req.TypeCommand())
	}
	return nil
}
Ejemplo n.º 5
0
func repoMergeHandler(c web.C, w http.ResponseWriter, r *http.Request) {
	if r.Body == nil {
		BadRequest(w, r, "merge requires JSON to be POSTed per API documentation")
		return
	}
	data, err := ioutil.ReadAll(r.Body)
	if err != nil {
		BadRequest(w, r, err)
		return
	}

	jsonData := struct {
		MergeType string   `json:"mergeType"`
		Note      string   `json:"note"`
		Parents   []string `json:"parents"`
	}{}
	if err := json.Unmarshal(data, &jsonData); err != nil {
		BadRequest(w, r, fmt.Sprintf("Malformed JSON request in body: %v", err))
		return
	}
	if len(jsonData.Parents) < 2 {
		BadRequest(w, r, "Must specify at least two parent UUIDs using 'parents' field")
		return
	}

	// Convert JSON of parents into []UUID
	parents := make([]dvid.UUID, len(jsonData.Parents))
	for i, uuidFrag := range jsonData.Parents {
		uuid, _, err := datastore.MatchingUUID(uuidFrag)
		if err != nil {
			BadRequest(w, r, fmt.Sprintf("can't match parent %q: %v", uuidFrag, err))
			return
		}
		parents[i] = uuid
	}

	// Convert merge type designation
	var mt datastore.MergeType
	switch jsonData.MergeType {
	case "conflict-free":
		mt = datastore.MergeConflictFree
	default:
		BadRequest(w, r, fmt.Sprintf("'mergeType' must be 'conflict-free' at this time"))
		return
	}

	// Do the merge
	newuuid, err := datastore.Merge(parents, jsonData.Note, mt)
	if err != nil {
		BadRequest(w, r, err)
	} else {
		w.Header().Set("Content-Type", "application/json")
		fmt.Fprintf(w, "{%q: %q}", "child", newuuid)
	}
}
Ejemplo n.º 6
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// repoRawSelector retrieves the particular repo from a potentially partial string that uniquely
// identifies the repo without any access restrictions.
func repoRawSelector(c *web.C, h http.Handler) http.Handler {
	fn := func(w http.ResponseWriter, r *http.Request) {
		var err error
		var uuid dvid.UUID
		if uuid, c.Env["versionID"], err = datastore.MatchingUUID(c.URLParams["uuid"]); err != nil {
			BadRequest(w, r, err)
			return
		}
		c.Env["uuid"] = uuid

		h.ServeHTTP(w, r)
	}
	return http.HandlerFunc(fn)
}
Ejemplo n.º 7
0
// ParseFilterSpec returns the specified ROI instance name and version within a FilterSpec.
// Currently, only one ROI can be specified in a FilterSpec.  Multiple ROIs should use a
// different FilterSpec like "intersect" instead of "roi".
func ParseFilterSpec(spec storage.FilterSpec) (name dvid.InstanceName, v dvid.VersionID, found bool, err error) {
	var filterval string
	filterval, found = spec.GetFilterSpec("roi")
	if !found {
		return
	}
	roispec := strings.Split(filterval, ",")
	if len(roispec) != 2 {
		err = fmt.Errorf("bad ROI spec: %s", filterval)
		return
	}
	name = dvid.InstanceName(roispec[0])
	_, v, err = datastore.MatchingUUID(roispec[1])
	return
}
Ejemplo n.º 8
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// ForegroundROI creates a new ROI by determining all non-background blocks.
func (d *Data) ForegroundROI(req datastore.Request, reply *datastore.Response) error {
	if d.Values.BytesPerElement() != 1 {
		return fmt.Errorf("Foreground ROI command only implemented for 1 byte/voxel data!")
	}

	// Parse the request
	var uuidStr, dataName, cmdStr, destName, backgroundStr string
	req.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &destName, &backgroundStr)

	// Get the version and repo
	uuid, versionID, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return err
	}
	if err = datastore.AddToNodeLog(uuid, []string{req.Command.String()}); err != nil {
		return err
	}

	// Use existing destination data or a new ROI data.
	var dest *roi.Data
	dest, err = roi.GetByUUID(uuid, dvid.InstanceName(destName))
	if err != nil {
		config := dvid.NewConfig()
		typeservice, err := datastore.TypeServiceByName("roi")
		if err != nil {
			return err
		}
		dataservice, err := datastore.NewData(uuid, typeservice, dvid.InstanceName(destName), config)
		if err != nil {
			return err
		}
		var ok bool
		dest, ok = dataservice.(*roi.Data)
		if !ok {
			return fmt.Errorf("Could not create ROI data instance")
		}
	}

	// Asynchronously process the voxels.
	background, err := dvid.StringToPointNd(backgroundStr, ",")
	if err != nil {
		return err
	}
	go d.foregroundROI(versionID, dest, background)

	return nil
}
Ejemplo n.º 9
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// repoSelector retrieves the particular repo from a potentially partial string that uniquely
// identifies the repo and enforces read-only mode.
func repoSelector(c *web.C, h http.Handler) http.Handler {
	fn := func(w http.ResponseWriter, r *http.Request) {
		if httpUnavailable(w) {
			return
		}
		action := strings.ToLower(r.Method)
		if readonly && action != "get" && action != "head" {
			BadRequest(w, r, "Server in read-only mode and will only accept GET and HEAD requests")
			return
		}

		var err error
		var uuid dvid.UUID
		if uuid, c.Env["versionID"], err = datastore.MatchingUUID(c.URLParams["uuid"]); err != nil {
			BadRequest(w, r, err)
			return
		}
		c.Env["uuid"] = uuid
		h.ServeHTTP(w, r)
	}
	return http.HandlerFunc(fn)
}
Ejemplo n.º 10
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// LoadLocal adds image data to a version node.  See HelpMessage for example of
// command-line use of "load local".
func (d *Data) LoadLocal(request datastore.Request, reply *datastore.Response) error {
	timedLog := dvid.NewTimeLog()

	// Parse the request
	var uuidStr, dataName, cmdStr, sourceStr, filename string
	_ = request.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &sourceStr, &filename)

	// Get the uuid from a uniquely identifiable string
	uuid, versionID, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return fmt.Errorf("Could not find node with UUID %s: %v", uuidStr, err)
	}

	// Load the V3D Raw file.
	ext := filepath.Ext(filename)
	switch ext {
	case ".raw", ".v3draw":
	default:
		return fmt.Errorf("Unknown extension '%s' when expected V3D Raw file", ext)
	}
	file, err := os.Open(filename)
	if err != nil {
		return err
	}
	unmarshaler := V3DRawMarshaler{}
	channels, err := unmarshaler.UnmarshalV3DRaw(file)
	if err != nil {
		return err
	}

	// Store the metadata
	d.NumChannels = len(channels)
	d.Properties.Values = make(dvid.DataValues, d.NumChannels)
	if d.NumChannels > 0 {
		reply.Text = fmt.Sprintf("Loaded %s into data '%s': found %d channels\n",
			d.DataName(), filename, d.NumChannels)
		reply.Text += fmt.Sprintf(" %s", channels[0])
	} else {
		reply.Text = fmt.Sprintf("Found no channels in file %s\n", filename)
		return nil
	}
	for i, channel := range channels {
		d.Properties.Values[i] = channel.Voxels.Values()[0]
	}

	// Get repo and save it.
	if err := datastore.SaveDataByUUID(uuid, d); err != nil {
		return err
	}

	// PUT each channel of the file into the datastore using a separate data name.
	for _, channel := range channels {
		dvid.Infof("Processing channel %d... \n", channel.channelNum)
		err = d.PutVoxels(versionID, channel.Voxels, nil)
		if err != nil {
			return err
		}
	}

	// Create a RGB composite from the first 3 channels.  This is considered to be channel 0
	// or can be accessed with the base data name.
	dvid.Infof("Creating composite image from channels...\n")
	err = d.storeComposite(versionID, channels)
	if err != nil {
		return err
	}

	timedLog.Infof("RPC load local '%s' completed", filename)
	return nil
}
Ejemplo n.º 11
0
func repoResolveHandler(c web.C, w http.ResponseWriter, r *http.Request) {
	uuid, _, err := datastore.MatchingUUID(c.URLParams["uuid"])
	if err != nil {
		BadRequest(w, r, err)
		return
	}
	if r.Body == nil {
		BadRequest(w, r, "merge resolving requires JSON to be POSTed per API documentation")
		return
	}
	data, err := ioutil.ReadAll(r.Body)
	if err != nil {
		BadRequest(w, r, err)
		return
	}

	jsonData := struct {
		Data    []dvid.InstanceName `json:"data"`
		Note    string              `json:"note"`
		Parents []string            `json:"parents"`
	}{}
	if err := json.Unmarshal(data, &jsonData); err != nil {
		BadRequest(w, r, fmt.Sprintf("Malformed JSON request in body: %v", err))
		return
	}
	if len(jsonData.Data) == 0 {
		BadRequest(w, r, "Must specify at least one data instance using 'data' field")
		return
	}
	if len(jsonData.Parents) < 2 {
		BadRequest(w, r, "Must specify at least two parent UUIDs using 'parents' field")
		return
	}

	// Convert JSON of parents into []UUID and whether we need a child for them to add deletions.
	numParents := len(jsonData.Parents)
	oldParents := make([]dvid.UUID, numParents)
	newParents := make([]dvid.UUID, numParents, numParents) // UUID of any parent extension for deletions.
	for i, uuidFrag := range jsonData.Parents {
		uuid, _, err := datastore.MatchingUUID(uuidFrag)
		if err != nil {
			BadRequest(w, r, fmt.Sprintf("can't match parent %q: %v", uuidFrag, err))
			return
		}
		oldParents[i] = uuid
		newParents[i] = dvid.NilUUID
	}

	// Iterate through all k/v for given data instances, making sure we find any conflicts.
	// If any are found, remove them with first UUIDs taking priority.
	for _, name := range jsonData.Data {
		data, err := datastore.GetDataByUUIDName(uuid, name)
		if err != nil {
			BadRequest(w, r, err)
			return
		}

		if err := datastore.DeleteConflicts(uuid, data, oldParents, newParents); err != nil {
			BadRequest(w, r, fmt.Errorf("Conflict deletion error for data %q: %v", data.DataName(), err))
			return
		}
	}

	// If we have any new nodes to accomodate deletions, commit them.
	for i, oldUUID := range oldParents {
		if newParents[i] != oldUUID {
			err := datastore.Commit(newParents[i], "Version for deleting conflicts before merge", nil)
			if err != nil {
				BadRequest(w, r, "Error while creating new nodes to handle required deletions: %v", err)
				return
			}
		}
	}

	// Do the merge
	mt := datastore.MergeConflictFree
	newuuid, err := datastore.Merge(newParents, jsonData.Note, mt)
	if err != nil {
		BadRequest(w, r, err)
	} else {
		w.Header().Set("Content-Type", "application/json")
		fmt.Fprintf(w, "{%q: %q}", "child", newuuid)
	}
}
Ejemplo n.º 12
0
func (d *Data) ConstructTiles(uuidStr string, tileSpec TileSpec, request datastore.Request) error {
	config := request.Settings()
	uuid, versionID, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return err
	}
	if err = datastore.AddToNodeLog(uuid, []string{request.Command.String()}); err != nil {
		return err
	}

	source, err := datastore.GetDataByUUID(uuid, d.Source)
	if err != nil {
		return err
	}
	src, ok := source.(*imageblk.Data)
	if !ok {
		return fmt.Errorf("Cannot construct imagetile for non-voxels data: %s", d.Source)
	}

	// Save the current tile specification
	d.Levels = tileSpec
	if err := datastore.SaveDataByUUID(uuid, d); err != nil {
		return err
	}

	// Get size of tile at lowest resolution.
	lastLevel := Scaling(len(tileSpec) - 1)
	loresSpec, found := tileSpec[lastLevel]
	if !found {
		return fmt.Errorf("Illegal tile spec.  Should have levels 0 to absent %d.", lastLevel)
	}
	var loresSize [3]float64
	for i := 0; i < 3; i++ {
		loresSize[i] = float64(loresSpec.Resolution[i]) * float64(DefaultTileSize[i])
	}
	loresMag := dvid.Point3d{1, 1, 1}
	for i := Scaling(0); i < lastLevel; i++ {
		levelMag := tileSpec[i].levelMag
		loresMag[0] *= levelMag[0]
		loresMag[1] *= levelMag[1]
		loresMag[2] *= levelMag[2]
	}

	// Get min and max points in terms of distance.
	var minPtDist, maxPtDist [3]float64
	for i := uint8(0); i < 3; i++ {
		minPtDist[i] = float64(src.MinPoint.Value(i)) * float64(src.VoxelSize[i])
		maxPtDist[i] = float64(src.MaxPoint.Value(i)) * float64(src.VoxelSize[i])
	}

	// Adjust min and max points for the tileable surface at lowest resolution.
	var minTiledPt, maxTiledPt dvid.Point3d
	for i := 0; i < 3; i++ {
		minInt, _ := math.Modf(minPtDist[i] / loresSize[i])
		maxInt, _ := math.Modf(maxPtDist[i] / loresSize[i])
		minTileCoord := int32(minInt)
		maxTileCoord := int32(maxInt)
		minTiledPt[i] = minTileCoord * DefaultTileSize[i] * loresMag[i]
		maxTiledPt[i] = (maxTileCoord+1)*DefaultTileSize[i]*loresMag[i] - 1
	}
	sizeVolume := maxTiledPt.Sub(minTiledPt).AddScalar(1)

	// Setup swappable ExtData buffers (the stitched slices) so we can be generating tiles
	// at same time we are reading and stitching them.
	var bufferLock [2]sync.Mutex
	var sliceBuffers [2]*imageblk.Voxels
	var bufferNum int

	// Get the planes we should tile.
	planes, err := config.GetShapes("planes", ";")
	if planes == nil {
		// If no planes are specified, construct imagetile for 3 orthogonal planes.
		planes = []dvid.DataShape{dvid.XY, dvid.XZ, dvid.YZ}
	}

	outF, err := d.putTileFunc(versionID)

	// sort the tile spec keys to iterate from highest to lowest resolution
	var sortedKeys []int
	for scaling, _ := range tileSpec {
		sortedKeys = append(sortedKeys, int(scaling))
	}
	sort.Ints(sortedKeys)

	for _, plane := range planes {
		timedLog := dvid.NewTimeLog()
		offset := minTiledPt.Duplicate()

		switch {

		case plane.Equals(dvid.XY):
			width, height, err := plane.GetSize2D(sizeVolume)
			if err != nil {
				return err
			}
			dvid.Debugf("Tiling XY image %d x %d pixels\n", width, height)
			for z := src.MinPoint.Value(2); z <= src.MaxPoint.Value(2); z++ {
				server.BlockOnInteractiveRequests("imagetile.ConstructTiles [xy]")

				sliceLog := dvid.NewTimeLog()
				offset = offset.Modify(map[uint8]int32{2: z})
				slice, err := dvid.NewOrthogSlice(dvid.XY, offset, dvid.Point2d{width, height})
				if err != nil {
					return err
				}
				bufferLock[bufferNum].Lock()
				sliceBuffers[bufferNum], err = src.NewVoxels(slice, nil)
				if err != nil {
					return err
				}
				if err = src.GetVoxels(versionID, sliceBuffers[bufferNum], nil); err != nil {
					return err
				}
				// Iterate through the different scales, extracting tiles at each resolution.
				go func(bufferNum int, offset dvid.Point) {
					defer bufferLock[bufferNum].Unlock()
					timedLog := dvid.NewTimeLog()
					for _, key := range sortedKeys {
						scaling := Scaling(key)
						levelSpec := tileSpec[scaling]
						if err != nil {
							dvid.Errorf("Error in tiling: %v\n", err)
							return
						}
						if err := d.extractTiles(sliceBuffers[bufferNum], offset, scaling, outF); err != nil {
							dvid.Errorf("Error in tiling: %v\n", err)
							return
						}
						if int(scaling) < len(tileSpec)-1 {
							if err := sliceBuffers[bufferNum].DownRes(levelSpec.levelMag); err != nil {
								dvid.Errorf("Error in tiling: %v\n", err)
								return
							}
						}
					}
					timedLog.Debugf("Tiled XY Tile using buffer %d", bufferNum)
				}(bufferNum, offset)

				sliceLog.Infof("Read XY Tile @ Z = %d, now tiling...", z)
				bufferNum = (bufferNum + 1) % 2
			}
			timedLog.Infof("Total time to generate XY Tiles")

		case plane.Equals(dvid.XZ):
			width, height, err := plane.GetSize2D(sizeVolume)
			if err != nil {
				return err
			}
			dvid.Debugf("Tiling XZ image %d x %d pixels\n", width, height)
			for y := src.MinPoint.Value(1); y <= src.MaxPoint.Value(1); y++ {
				server.BlockOnInteractiveRequests("imagetile.ConstructTiles [xz]")

				sliceLog := dvid.NewTimeLog()
				offset = offset.Modify(map[uint8]int32{1: y})
				slice, err := dvid.NewOrthogSlice(dvid.XZ, offset, dvid.Point2d{width, height})
				if err != nil {
					return err
				}
				bufferLock[bufferNum].Lock()
				sliceBuffers[bufferNum], err = src.NewVoxels(slice, nil)
				if err != nil {
					return err
				}
				if err = src.GetVoxels(versionID, sliceBuffers[bufferNum], nil); err != nil {
					return err
				}
				// Iterate through the different scales, extracting tiles at each resolution.
				go func(bufferNum int, offset dvid.Point) {
					defer bufferLock[bufferNum].Unlock()
					timedLog := dvid.NewTimeLog()
					for _, key := range sortedKeys {
						scaling := Scaling(key)
						levelSpec := tileSpec[scaling]
						if err != nil {
							dvid.Errorf("Error in tiling: %v\n", err)
							return
						}
						if err := d.extractTiles(sliceBuffers[bufferNum], offset, scaling, outF); err != nil {
							dvid.Errorf("Error in tiling: %v\n", err)
							return
						}
						if int(scaling) < len(tileSpec)-1 {
							if err := sliceBuffers[bufferNum].DownRes(levelSpec.levelMag); err != nil {
								dvid.Errorf("Error in tiling: %v\n", err)
								return
							}
						}
					}
					timedLog.Debugf("Tiled XZ Tile using buffer %d", bufferNum)
				}(bufferNum, offset)

				sliceLog.Infof("Read XZ Tile @ Y = %d, now tiling...", y)
				bufferNum = (bufferNum + 1) % 2
			}
			timedLog.Infof("Total time to generate XZ Tiles")

		case plane.Equals(dvid.YZ):
			width, height, err := plane.GetSize2D(sizeVolume)
			if err != nil {
				return err
			}
			dvid.Debugf("Tiling YZ image %d x %d pixels\n", width, height)
			for x := src.MinPoint.Value(0); x <= src.MaxPoint.Value(0); x++ {
				server.BlockOnInteractiveRequests("imagetile.ConstructTiles [yz]")

				sliceLog := dvid.NewTimeLog()
				offset = offset.Modify(map[uint8]int32{0: x})
				slice, err := dvid.NewOrthogSlice(dvid.YZ, offset, dvid.Point2d{width, height})
				if err != nil {
					return err
				}
				bufferLock[bufferNum].Lock()
				sliceBuffers[bufferNum], err = src.NewVoxels(slice, nil)
				if err != nil {
					return err
				}
				if err = src.GetVoxels(versionID, sliceBuffers[bufferNum], nil); err != nil {
					return err
				}
				// Iterate through the different scales, extracting tiles at each resolution.
				go func(bufferNum int, offset dvid.Point) {
					defer bufferLock[bufferNum].Unlock()
					timedLog := dvid.NewTimeLog()
					for _, key := range sortedKeys {
						scaling := Scaling(key)
						levelSpec := tileSpec[scaling]
						outF, err := d.putTileFunc(versionID)
						if err != nil {
							dvid.Errorf("Error in tiling: %v\n", err)
							return
						}
						if err := d.extractTiles(sliceBuffers[bufferNum], offset, scaling, outF); err != nil {
							dvid.Errorf("Error in tiling: %v\n", err)
							return
						}
						if int(scaling) < len(tileSpec)-1 {
							if err := sliceBuffers[bufferNum].DownRes(levelSpec.levelMag); err != nil {
								dvid.Errorf("Error in tiling: %v\n", err)
								return
							}
						}
					}
					timedLog.Debugf("Tiled YZ Tile using buffer %d", bufferNum)
				}(bufferNum, offset)

				sliceLog.Debugf("Read YZ Tile @ X = %d, now tiling...", x)
				bufferNum = (bufferNum + 1) % 2
			}
			timedLog.Infof("Total time to generate YZ Tiles")

		default:
			dvid.Infof("Skipping request to tile '%s'.  Unsupported.", plane)
		}
	}
	return nil
}
Ejemplo n.º 13
0
// Returns the default tile spec that will fully cover the source extents and scaling 0
// uses the original voxel resolutions with each subsequent scale causing a 2x zoom out.
func (d *Data) DefaultTileSpec(uuidStr string) (TileSpec, error) {
	uuid, _, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return nil, err
	}
	source, err := datastore.GetDataByUUID(uuid, d.Source)
	if err != nil {
		return nil, err
	}
	var ok bool
	var src *imageblk.Data
	src, ok = source.(*imageblk.Data)
	if !ok {
		return nil, fmt.Errorf("Cannot construct tile spec for non-voxels data: %s", d.Source)
	}

	// Set scaling 0 based on extents and resolution of source.
	//extents := src.Extents()
	resolution := src.Properties.Resolution.VoxelSize

	if len(resolution) != 3 {
		return nil, fmt.Errorf("Cannot construct tile spec for non-3d data: voxel is %d-d",
			len(resolution))
	}

	// Expand min and max points to coincide with full tile boundaries of highest resolution.
	minTileCoord := src.MinPoint.(dvid.Chunkable).Chunk(DefaultTileSize)
	maxTileCoord := src.MaxPoint.(dvid.Chunkable).Chunk(DefaultTileSize)
	minTiledPt := minTileCoord.MinPoint(DefaultTileSize)
	maxTiledPt := maxTileCoord.MaxPoint(DefaultTileSize)
	sizeVolume := maxTiledPt.Sub(minTiledPt).AddScalar(1)

	dvid.Infof("Creating default multiscale tile spec for volume of size %s\n", sizeVolume)

	// For each dimension, calculate the number of scaling levels necessary to cover extent,
	// assuming we use the raw resolution at scaling 0.
	numScales := make([]int, 3)
	var maxScales int
	var dim uint8
	for dim = 0; dim < 3; dim++ {
		numPixels := float64(sizeVolume.Value(dim))
		tileSize := float64(DefaultTileSize.Value(dim))
		if numPixels <= tileSize {
			numScales[dim] = 1
		} else {
			numScales[dim] = int(math.Ceil(math.Log2(numPixels/tileSize))) + 1
		}
		if numScales[dim] > maxScales {
			maxScales = numScales[dim]
		}
	}

	// Initialize the tile level specification
	specs := make(TileSpec, maxScales)
	curRes := resolution
	levelMag := dvid.Point3d{2, 2, 2}
	var scaling Scaling
	for scaling = 0; scaling < Scaling(maxScales); scaling++ {
		for dim = 0; dim < 3; dim++ {
			if scaling >= Scaling(numScales[dim]) {
				levelMag[dim] = 1
			}
		}
		specs[scaling] = TileScaleSpec{
			LevelSpec{curRes, DefaultTileSize},
			levelMag,
		}
		curRes = curRes.MultScalar(2.0)
	}
	return specs, nil
}
Ejemplo n.º 14
0
// switchboard for remote command execution
func handleCommand(cmd *datastore.Request) (reply *datastore.Response, err error) {
	if cmd.Name() == "" {
		err = fmt.Errorf("Server error: got empty command!")
		return
	}
	reply = new(datastore.Response)

	switch cmd.Name() {

	case "help":
		reply.Text = fmt.Sprintf(RPCHelpMessage, config.RPCAddress(), config.HTTPAddress())

	case "shutdown":
		dvid.Infof("DVID server halting due to 'shutdown' command.")
		reply.Text = fmt.Sprintf("DVID server at %s is being shutdown...\n", config.RPCAddress())
		// launch goroutine shutdown so we can concurrently return shutdown message to client.
		go Shutdown()

	case "types":
		if len(cmd.Command) == 1 {
			text := "\nData Types within this DVID Server\n"
			text += "----------------------------------\n"
			var mapTypes map[dvid.URLString]datastore.TypeService
			if mapTypes, err = datastore.Types(); err != nil {
				err = fmt.Errorf("Error trying to retrieve data types within this DVID server!")
				return
			}
			for url, typeservice := range mapTypes {
				text += fmt.Sprintf("%-20s %s\n", typeservice.GetTypeName(), url)
			}
			reply.Text = text
		} else {
			if len(cmd.Command) != 3 || cmd.Command[2] != "help" {
				err = fmt.Errorf("Unknown types command: %q", cmd.Command)
				return
			}
			var typename string
			var typeservice datastore.TypeService
			cmd.CommandArgs(1, &typename)
			if typeservice, err = datastore.TypeServiceByName(dvid.TypeString(typename)); err != nil {
				return
			}
			reply.Text = typeservice.Help()
		}

	case "repos":
		var subcommand string
		cmd.CommandArgs(1, &subcommand)

		switch subcommand {
		case "new":
			var alias, description string
			cmd.CommandArgs(2, &alias, &description)

			config := cmd.Settings()
			var uuidStr, passcode string
			var found bool
			if uuidStr, found, err = config.GetString("uuid"); err != nil {
				return
			}
			var assign *dvid.UUID
			if !found {
				assign = nil
			} else {
				uuid := dvid.UUID(uuidStr)
				assign = &uuid
			}
			if passcode, found, err = config.GetString("passcode"); err != nil {
				return
			}
			var root dvid.UUID
			root, err = datastore.NewRepo(alias, description, assign, passcode)
			if err != nil {
				return
			}
			if err = datastore.SetRepoAlias(root, alias); err != nil {
				return
			}
			if err = datastore.SetRepoDescription(root, description); err != nil {
				return
			}
			reply.Text = fmt.Sprintf("New repo %q created with head node %s\n", alias, root)

		case "delete":
			var uuidStr, passcode string
			cmd.CommandArgs(2, &uuidStr, &passcode)

			var uuid dvid.UUID
			if uuid, _, err = datastore.MatchingUUID(uuidStr); err != nil {
				return
			}
			if err = datastore.DeleteRepo(uuid, passcode); err != nil {
				return
			}
			reply.Text = fmt.Sprintf("Started deletion of repo %s.\n", uuid)

		default:
			err = fmt.Errorf("Unknown repos command: %q", subcommand)
			return
		}

	case "repo":
		var uuidStr, subcommand string
		cmd.CommandArgs(1, &uuidStr, &subcommand)
		var uuid dvid.UUID
		if uuid, _, err = datastore.MatchingUUID(uuidStr); err != nil {
			return
		}

		switch subcommand {
		case "new":
			var typename, dataname string
			cmd.CommandArgs(3, &typename, &dataname)

			// Get TypeService
			var typeservice datastore.TypeService
			if typeservice, err = datastore.TypeServiceByName(dvid.TypeString(typename)); err != nil {
				return
			}

			// Create new data
			config := cmd.Settings()
			if _, err = datastore.NewData(uuid, typeservice, dvid.InstanceName(dataname), config); err != nil {
				return
			}
			reply.Text = fmt.Sprintf("Data %q [%s] added to node %s\n", dataname, typename, uuid)
			datastore.AddToRepoLog(uuid, []string{cmd.String()})

		case "rename":
			var name1, name2, passcode string
			cmd.CommandArgs(3, &name1, &name2, &passcode)
			oldname := dvid.InstanceName(name1)
			newname := dvid.InstanceName(name2)

			// Make sure this instance exists.
			if _, err = datastore.GetDataByUUIDName(uuid, oldname); err != nil {
				err = fmt.Errorf("Error trying to rename %q for UUID %s: %v", oldname, uuid, err)
				return
			}

			// Do the rename.
			if err = datastore.RenameData(uuid, oldname, newname, passcode); err != nil {
				err = fmt.Errorf("Error renaming data instance %q to %q: %v", oldname, newname, err)
				return
			}
			reply.Text = fmt.Sprintf("Renamed data instance %q to %q from DAG subgraph @ root %s\n", oldname, newname, uuid)

		case "branch":
			cmd.CommandArgs(3, &uuidStr)

			var assign *dvid.UUID
			if uuidStr == "" {
				assign = nil
			} else {
				u := dvid.UUID(uuidStr)
				assign = &u
			}
			var child dvid.UUID
			if child, err = datastore.NewVersion(uuid, fmt.Sprintf("branch of %s", uuid), assign); err != nil {
				return
			}
			reply.Text = fmt.Sprintf("Branch %s added to node %s\n", child, uuid)
			datastore.AddToRepoLog(uuid, []string{cmd.String()})

		case "merge":
			uuids := cmd.CommandArgs(2)

			parents := make([]dvid.UUID, len(uuids)+1)
			parents[0] = dvid.UUID(uuid)
			i := 1
			for uuid := range uuids {
				parents[i] = dvid.UUID(uuid)
				i++
			}
			var child dvid.UUID
			child, err = datastore.Merge(parents, fmt.Sprintf("merge of parents %v", parents), datastore.MergeConflictFree)
			if err != nil {
				return
			}
			reply.Text = fmt.Sprintf("Parents %v merged into node %s\n", parents, child)
			datastore.AddToRepoLog(uuid, []string{cmd.String()})

		case "migrate":
			var source, oldStoreName string
			cmd.CommandArgs(3, &source, &oldStoreName)
			var store dvid.Store
			store, err = storage.GetStoreByAlias(storage.Alias(oldStoreName))
			if err != nil {
				return
			}
			config := cmd.Settings()
			go func() {
				if err = datastore.MigrateInstance(uuid, dvid.InstanceName(source), store, config); err != nil {
					dvid.Errorf("migrate error: %v\n", err)
				}
			}()
			reply.Text = fmt.Sprintf("Started migration of uuid %s data instance %q from old store %q...\n", uuid, source, oldStoreName)

		case "copy":
			var source, target string
			cmd.CommandArgs(3, &source, &target)
			config := cmd.Settings()
			go func() {
				if err = datastore.CopyInstance(uuid, dvid.InstanceName(source), dvid.InstanceName(target), config); err != nil {
					dvid.Errorf("copy error: %v\n", err)
				}
			}()
			reply.Text = fmt.Sprintf("Started copy of uuid %s data instance %q to %q...\n", uuid, source, target)

		case "push":
			var target string
			cmd.CommandArgs(3, &target)
			config := cmd.Settings()
			go func() {
				if err = datastore.PushRepo(uuid, target, config); err != nil {
					dvid.Errorf("push error: %v\n", err)
				}
			}()
			reply.Text = fmt.Sprintf("Started push of repo %s to %q...\n", uuid, target)

			/*
				case "pull":
					var target string
					cmd.CommandArgs(3, &target)
					config := cmd.Settings()
					if err = datastore.Pull(uuid, target, config); err != nil {
						return
					}
					reply.Text = fmt.Sprintf("Repo %s pulled from %q\n", uuid, target)
			*/

		case "delete":
			var dataname, passcode string
			cmd.CommandArgs(3, &dataname, &passcode)

			// Make sure this instance exists.
			if _, err = datastore.GetDataByUUIDName(uuid, dvid.InstanceName(dataname)); err != nil {
				err = fmt.Errorf("Error trying to delete %q for UUID %s: %v", dataname, uuid, err)
				return
			}

			// Do the deletion.  Under hood, modifies metadata immediately and launches async k/v deletion.
			if err = datastore.DeleteDataByName(uuid, dvid.InstanceName(dataname), passcode); err != nil {
				err = fmt.Errorf("Error deleting data instance %q: %v", dataname, err)
				return
			}
			reply.Text = fmt.Sprintf("Started deletion of data instance %q from repo with root %s\n", dataname, uuid)

		default:
			err = fmt.Errorf("Unknown command: %q", cmd)
			return
		}

	case "node":
		var uuidStr, descriptor string
		cmd.CommandArgs(1, &uuidStr, &descriptor)
		var uuid dvid.UUID
		if uuid, _, err = datastore.MatchingUUID(uuidStr); err != nil {
			return
		}

		// Get the DataService
		dataname := dvid.InstanceName(descriptor)
		var subcommand string
		cmd.CommandArgs(3, &subcommand)
		var dataservice datastore.DataService
		if dataservice, err = datastore.GetDataByUUIDName(uuid, dataname); err != nil {
			return
		}
		if subcommand == "help" {
			reply.Text = dataservice.Help()
			return
		}
		err = dataservice.DoRPC(*cmd, reply)
		return

	default:
		// Check to see if it's a name of a compiled data type, in which case we refer it to the data type.
		types := datastore.CompiledTypes()
		for name, typeservice := range types {
			if name == dvid.TypeString(cmd.Argument(0)) {
				err = typeservice.Do(*cmd, reply)
				return
			}
		}

		err = fmt.Errorf("Unknown command: '%s'", *cmd)
	}
	return
}
Ejemplo n.º 15
0
// PutLocal adds image data to a version node, altering underlying blocks if the image
// intersects the block.
//
// The image filename glob MUST BE absolute file paths that are visible to the server.
// This function is meant for mass ingestion of large data files, and it is inappropriate
// to read gigabytes of data just to send it over the network to a local DVID.
func (d *Data) PutLocal(request datastore.Request, reply *datastore.Response) error {
	timedLog := dvid.NewTimeLog()

	// Parse the request
	var uuidStr, dataName, cmdStr, sourceStr, planeStr, offsetStr string
	filenames := request.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &sourceStr,
		&planeStr, &offsetStr)
	if len(filenames) == 0 {
		return fmt.Errorf("Need to include at least one file to add: %s", request)
	}

	// Get offset
	offset, err := dvid.StringToPoint(offsetStr, ",")
	if err != nil {
		return fmt.Errorf("Illegal offset specification: %s: %v", offsetStr, err)
	}

	// Get list of files to add
	var addedFiles string
	if len(filenames) == 1 {
		addedFiles = filenames[0]
	} else {
		addedFiles = fmt.Sprintf("filenames: %s [%d more]", filenames[0], len(filenames)-1)
	}
	dvid.Debugf(addedFiles + "\n")

	// Get plane
	plane, err := dvid.DataShapeString(planeStr).DataShape()
	if err != nil {
		return err
	}

	// Get Repo and IDs
	uuid, versionID, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return err
	}

	// Load and PUT each image.
	numSuccessful := 0
	for _, filename := range filenames {
		sliceLog := dvid.NewTimeLog()
		img, _, err := dvid.GoImageFromFile(filename)
		if err != nil {
			return fmt.Errorf("Error after %d images successfully added: %v", numSuccessful, err)
		}
		slice, err := dvid.NewOrthogSlice(plane, offset, dvid.RectSize(img.Bounds()))
		if err != nil {
			return fmt.Errorf("Unable to determine slice: %v", err)
		}

		vox, err := d.NewVoxels(slice, img)
		if err != nil {
			return err
		}
		storage.FileBytesRead <- len(vox.Data())
		if err = d.PutVoxels(versionID, vox, nil); err != nil {
			return err
		}
		sliceLog.Debugf("%s put local %s", d.DataName(), slice)
		numSuccessful++
		offset = offset.Add(dvid.Point3d{0, 0, 1})
	}

	if err := datastore.AddToNodeLog(uuid, []string{request.Command.String()}); err != nil {
		return err
	}
	timedLog.Infof("RPC put local (%s) completed", addedFiles)
	return nil
}
Ejemplo n.º 16
0
// DoRPC acts as a switchboard for RPC commands.
func (d *Data) DoRPC(req datastore.Request, reply *datastore.Response) error {
	switch req.TypeCommand() {
	case "load":
		if len(req.Command) < 5 {
			return fmt.Errorf("Poorly formatted load command.  See command-line help.")
		}
		// Parse the request
		var uuidStr, dataName, cmdStr, offsetStr string
		filenames, err := req.FilenameArgs(1, &uuidStr, &dataName, &cmdStr, &offsetStr)
		if err != nil {
			return err
		}
		if len(filenames) == 0 {
			hostname, _ := os.Hostname()
			return fmt.Errorf("Couldn't find any files to add.  Are they visible to DVID server on %s?",
				hostname)
		}

		// Get offset
		offset, err := dvid.StringToPoint(offsetStr, ",")
		if err != nil {
			return fmt.Errorf("Illegal offset specification: %s: %v", offsetStr, err)
		}

		// Get list of files to add
		var addedFiles string
		if len(filenames) == 1 {
			addedFiles = filenames[0]
		} else {
			addedFiles = fmt.Sprintf("filenames: %s [%d more]", filenames[0], len(filenames)-1)
		}
		dvid.Debugf(addedFiles + "\n")

		uuid, versionID, err := datastore.MatchingUUID(uuidStr)
		if err != nil {
			return err
		}
		if err = datastore.AddToNodeLog(uuid, []string{req.Command.String()}); err != nil {
			return err
		}
		return d.LoadImages(versionID, offset, filenames)

	case "put":
		if len(req.Command) < 7 {
			return fmt.Errorf("Poorly formatted put command.  See command-line help.")
		}
		source := req.Command[4]
		switch source {
		case "local":
			return d.PutLocal(req, reply)
		case "remote":
			return fmt.Errorf("put remote not yet implemented")
		default:
			return fmt.Errorf("Unknown command.  Data instance '%s' [%s] does not support '%s' command.",
				d.DataName(), d.TypeName(), req.TypeCommand())
		}

	case "roi":
		if len(req.Command) < 6 {
			return fmt.Errorf("Poorly formatted roi command. See command-line help.")
		}
		return d.ForegroundROI(req, reply)

	default:
		return fmt.Errorf("Unknown command.  Data instance '%s' [%s] does not support '%s' command.",
			d.DataName(), d.TypeName(), req.TypeCommand())
	}
	return nil
}
Ejemplo n.º 17
0
// Do acts as a switchboard for remote command execution
func (c *RPCConnection) Do(cmd datastore.Request, reply *datastore.Response) error {
	if reply == nil {
		dvid.Debugf("reply is nil coming in!\n")
		return nil
	}
	if cmd.Name() == "" {
		return fmt.Errorf("Server error: got empty command!")
	}

	switch cmd.Name() {

	case "help":
		reply.Text = fmt.Sprintf(RPCHelpMessage, config.RPCAddress(), config.HTTPAddress())

	case "shutdown":
		Shutdown()
		// Make this process shutdown in a second to allow time for RPC to finish.
		// TODO -- Better way to do this?
		log.Printf("DVID server halted due to 'shutdown' command.")
		reply.Text = fmt.Sprintf("DVID server at %s has been halted.\n", config.RPCAddress())
		go func() {
			time.Sleep(1 * time.Second)
			os.Exit(0)
		}()

	case "types":
		if len(cmd.Command) == 1 {
			text := "\nData Types within this DVID Server\n"
			text += "----------------------------------\n"
			mapTypes, err := datastore.Types()
			if err != nil {
				return fmt.Errorf("Error trying to retrieve data types within this DVID server!")
			}
			for url, typeservice := range mapTypes {
				text += fmt.Sprintf("%-20s %s\n", typeservice.GetTypeName(), url)
			}
			reply.Text = text
		} else {
			if len(cmd.Command) != 3 || cmd.Command[2] != "help" {
				return fmt.Errorf("Unknown types command: %q", cmd.Command)
			}
			var typename string
			cmd.CommandArgs(1, &typename)
			typeservice, err := datastore.TypeServiceByName(dvid.TypeString(typename))
			if err != nil {
				return err
			}
			reply.Text = typeservice.Help()
		}

	case "repos":
		var subcommand, alias, description, uuidStr string
		cmd.CommandArgs(1, &subcommand, &alias, &description, &uuidStr)
		switch subcommand {
		case "new":
			var assign *dvid.UUID
			if uuidStr == "" {
				assign = nil
			} else {
				u := dvid.UUID(uuidStr)
				assign = &u
			}
			root, err := datastore.NewRepo(alias, description, assign)
			if err != nil {
				return err
			}
			if err := datastore.SetRepoAlias(root, alias); err != nil {
				return err
			}
			if err := datastore.SetRepoDescription(root, description); err != nil {
				return err
			}
			reply.Text = fmt.Sprintf("New repo %q created with head node %s\n", alias, root)
		default:
			return fmt.Errorf("Unknown repos command: %q", subcommand)
		}

	case "repo":
		var uuidStr, subcommand string
		cmd.CommandArgs(1, &uuidStr, &subcommand)
		uuid, _, err := datastore.MatchingUUID(uuidStr)
		if err != nil {
			return err
		}

		switch subcommand {
		case "new":
			var typename, dataname string
			cmd.CommandArgs(3, &typename, &dataname)

			// Get TypeService
			typeservice, err := datastore.TypeServiceByName(dvid.TypeString(typename))
			if err != nil {
				return err
			}

			// Create new data
			config := cmd.Settings()
			_, err = datastore.NewData(uuid, typeservice, dvid.InstanceName(dataname), config)
			if err != nil {
				return err
			}
			reply.Text = fmt.Sprintf("Data %q [%s] added to node %s\n", dataname, typename, uuid)
			datastore.AddToRepoLog(uuid, []string{cmd.String()})

		case "branch":
			cmd.CommandArgs(3, &uuidStr)

			var assign *dvid.UUID
			if uuidStr == "" {
				assign = nil
			} else {
				u := dvid.UUID(uuidStr)
				assign = &u
			}
			child, err := datastore.NewVersion(uuid, fmt.Sprintf("branch of %s", uuid), assign)
			if err != nil {
				return err
			}
			reply.Text = fmt.Sprintf("Branch %s added to node %s\n", child, uuid)
			datastore.AddToRepoLog(uuid, []string{cmd.String()})

		case "merge":
			uuids := cmd.CommandArgs(2)

			parents := make([]dvid.UUID, len(uuids)+1)
			parents[0] = dvid.UUID(uuid)
			i := 1
			for uuid := range uuids {
				parents[i] = dvid.UUID(uuid)
				i++
			}
			child, err := datastore.Merge(parents, fmt.Sprintf("merge of parents %v", parents), datastore.MergeConflictFree)
			if err != nil {
				return err
			}
			reply.Text = fmt.Sprintf("Parents %v merged into node %s\n", parents, child)
			datastore.AddToRepoLog(uuid, []string{cmd.String()})

		case "push":
			/*
				var target string
				cmd.CommandArgs(3, &target)
				config := cmd.Settings()
				if err = datastore.Push(repo, target, config); err != nil {
					return err
				}
				reply.Text = fmt.Sprintf("Repo %q pushed to %q\n", repo.RootUUID(), target)
			*/
			return fmt.Errorf("push command has been temporarily suspended")
		default:
			return fmt.Errorf("Unknown command: %q", cmd)
		}

	case "node":
		var uuidStr, descriptor string
		cmd.CommandArgs(1, &uuidStr, &descriptor)
		uuid, _, err := datastore.MatchingUUID(uuidStr)
		if err != nil {
			return err
		}

		// Get the DataService
		dataname := dvid.InstanceName(descriptor)
		var subcommand string
		cmd.CommandArgs(3, &subcommand)
		dataservice, err := datastore.GetDataByUUID(uuid, dataname)
		if err != nil {
			return err
		}
		if subcommand == "help" {
			reply.Text = dataservice.Help()
			return nil
		}
		return dataservice.DoRPC(cmd, reply)

	default:
		return fmt.Errorf("Unknown command: '%s'", cmd)
	}
	return nil
}
Ejemplo n.º 18
0
// CreateComposite creates a new rgba8 image by combining hash of labels + the grayscale
func (d *Data) CreateComposite(request datastore.Request, reply *datastore.Response) error {
	timedLog := dvid.NewTimeLog()

	// Parse the request
	var uuidStr, dataName, cmdStr, grayscaleName, destName string
	request.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &grayscaleName, &destName)

	// Get the version
	uuid, v, err := datastore.MatchingUUID(uuidStr)
	if err != nil {
		return err
	}

	// Log request
	if err = datastore.AddToNodeLog(uuid, []string{request.Command.String()}); err != nil {
		return err
	}

	// Get the grayscale data.
	dataservice, err := datastore.GetDataByUUIDName(uuid, dvid.InstanceName(grayscaleName))
	if err != nil {
		return err
	}
	grayscale, ok := dataservice.(*imageblk.Data)
	if !ok {
		return fmt.Errorf("%s is not the name of uint8 data", grayscaleName)
	}

	// Create a new rgba8blk data.
	var compservice datastore.DataService
	compservice, err = datastore.GetDataByUUIDName(uuid, dvid.InstanceName(destName))
	if err == nil {
		return fmt.Errorf("Data instance with name %q already exists", destName)
	}
	typeService, err := datastore.TypeServiceByName("rgba8blk")
	if err != nil {
		return fmt.Errorf("Could not get rgba8 type service from DVID")
	}
	config := dvid.NewConfig()
	compservice, err = datastore.NewData(uuid, typeService, dvid.InstanceName(destName), config)
	if err != nil {
		return err
	}
	composite, ok := compservice.(*imageblk.Data)
	if !ok {
		return fmt.Errorf("Error: %s was unable to be set to rgba8 data", destName)
	}

	// Iterate through all labels and grayscale chunks incrementally in Z, a layer at a time.
	wg := new(sync.WaitGroup)
	op := &compositeOp{grayscale, composite, v}
	chunkOp := &storage.ChunkOp{op, wg}

	store, err := d.GetOrderedKeyValueDB()
	if err != nil {
		return err
	}
	ctx := datastore.NewVersionedCtx(d, v)
	extents := d.Extents()
	blockBeg := imageblk.NewTKey(extents.MinIndex)
	blockEnd := imageblk.NewTKey(extents.MaxIndex)
	err = store.ProcessRange(ctx, blockBeg, blockEnd, chunkOp, storage.ChunkFunc(d.CreateCompositeChunk))
	wg.Wait()

	// Set new mapped data to same extents.
	composite.Properties.Extents = grayscale.Properties.Extents
	if err := datastore.SaveDataByUUID(uuid, composite); err != nil {
		dvid.Infof("Could not save new data '%s': %v\n", destName, err)
	}

	timedLog.Infof("Created composite of %s and %s", grayscaleName, destName)
	return nil
}