func TestLabels(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create testbed volume and data instances
uuid, _ := initTestRepo()
var config dvid.Config
server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
server.CreateTestInstance(t, uuid, "labelvol", "bodies", config)
// Establish syncs
server.CreateTestSync(t, uuid, "labels", "bodies")
server.CreateTestSync(t, uuid, "bodies", "labels")
// Populate the labels, which should automatically populate the labelvol
_ = createLabelTestVolume(t, uuid, "labels")
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on sync of labels: %v\n", err)
}
// Add annotations syncing with "labels" instance checking for deduplication.
server.CreateTestInstance(t, uuid, "annotation", "mysynapses", config)
server.CreateTestSync(t, uuid, "mysynapses", "labels,bodies,labels,bodies,labels,bodies")
dataservice, err := datastore.GetDataByUUIDName(uuid, "mysynapses")
if err != nil {
t.Fatal(err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Fatalf("Can't convert dataservice %v into datastore.Data\n", dataservice)
}
if len(data.SyncedData()) != 2 {
t.Fatalf("Expected 2 syncs (uuids for labels and bodies], got %v\n", data.SyncedData())
}
// PUT first batch of synapses
testJSON, err := json.Marshal(testData)
if err != nil {
t.Fatal(err)
}
url1 := fmt.Sprintf("%snode/%s/mysynapses/elements", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", url1, strings.NewReader(string(testJSON)))
// Test if labels were properly denormalized. For the POST we have synchronized label denormalization.
// If this were to become asynchronous, we'd want to block on updating like the labelblk<->labelvol sync.
testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel2, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel3, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel3NoRel, "%snode/%s/mysynapses/label/3", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)
// Make change to labelblk and make sure our label synapses have been adjusted (case A)
_ = modifyLabelTestVolume(t, uuid, "labels")
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of labels->annotations: %v\n", err)
}
testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel2a, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel3a, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel4NoRel, "%snode/%s/mysynapses/label/4", server.WebAPIPath, uuid)
// Make change to labelvol and make sure our label synapses have been adjusted (case B).
// Merge 3a into 2a.
testMerge := mergeJSON(`[2, 3]`)
testMerge.send(t, uuid, "bodies")
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on sync of labels: %v\n", err)
}
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of synapses: %v\n", err)
}
testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel2b, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, nil, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)
// Now split label 2b off and check if annotations also split
// Create the sparsevol encoding for split area
numspans := len(bodysplit.voxelSpans)
rles := make(dvid.RLEs, numspans, numspans)
for i, span := range bodysplit.voxelSpans {
start := dvid.Point3d{span[2], span[1], span[0]}
length := span[3] - span[2] + 1
rles[i] = dvid.NewRLE(start, length)
}
buf := getBytesRLE(t, rles)
// Submit the split sparsevol
reqStr := fmt.Sprintf("%snode/%s/%s/split/%d?splitlabel=7", server.WebAPIPath, uuid, "bodies", 2)
r := server.TestHTTP(t, "POST", reqStr, buf)
jsonVal := make(map[string]uint64)
if err := json.Unmarshal(r, &jsonVal); err != nil {
t.Errorf("Unable to get new label from split. Instead got: %v\n", jsonVal)
}
// Verify that the annotations are correct.
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of split->annotations: %v\n", err)
}
testResponseLabel(t, expectedLabel2c, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
url2 := fmt.Sprintf("%snode/%s/mysynapses/label/7?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel7, url2)
// Change the name of the annotations.
if err = datastore.RenameData(uuid, "mysynapses", "bodies", "foobar"); err == nil {
t.Fatalf("Should have been prevented from renaming data 'mysynapses' to existing data 'bodies'!\n")
}
if err = datastore.RenameData(uuid, "mysynapses", "renamedData", "foobar"); err != nil {
t.Fatalf("Error renaming annotations: %v\n", err)
}
// Make sure the old name is no longer there and the new one is.
server.TestBadHTTP(t, "GET", url2, nil)
testResponseLabel(t, expectedLabel2c, "%snode/%s/renamedData/label/2?relationships=true", server.WebAPIPath, uuid)
// Try a coarse split.
// Create the encoding for split area in block coordinates.
rles = dvid.RLEs{
dvid.NewRLE(dvid.Point3d{3, 1, 3}, 1),
}
buf = getBytesRLE(t, rles)
// Submit the coarse split
reqStr = fmt.Sprintf("%snode/%s/%s/split-coarse/2?splitlabel=8", server.WebAPIPath, uuid, "bodies")
r = server.TestHTTP(t, "POST", reqStr, buf)
jsonVal = make(map[string]uint64)
if err := json.Unmarshal(r, &jsonVal); err != nil {
t.Errorf("Unable to get new label from split. Instead got: %v\n", jsonVal)
}
// Verify that the annotations are correct.
if err := datastore.BlockOnUpdating(uuid, "renamedData"); err != nil {
t.Fatalf("Error blocking on sync of split->annotations: %v\n", err)
}
testResponseLabel(t, expectedLabel2c, "%snode/%s/renamedData/label/8?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, nil, "%snode/%s/renamedData/label/2?relationships=true", server.WebAPIPath, uuid)
// Delete a labeled annotation and make sure it's not in label
delurl := fmt.Sprintf("%snode/%s/%s/element/20_30_40", server.WebAPIPath, uuid, "renamedData")
server.TestHTTP(t, "DELETE", delurl, nil)
testResponseLabel(t, afterDeleteOn7, "%snode/%s/%s/label/7?relationships=true", server.WebAPIPath, uuid, "renamedData")
}
func TestFilter(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create testbed volume and data instances
uuid, _ := initTestRepo()
var config dvid.Config
server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
d, err := datastore.NewData(uuid, labelvolT, "bodies", config)
if err != nil {
t.Fatalf("Unable to create labelvol instance: %s\n", err)
}
server.CreateTestSync(t, uuid, "labels", "bodies")
server.CreateTestSync(t, uuid, "bodies", "labels")
// Populate the labels, which should automatically populate the labelvol
_ = createLabelTestVolume(t, uuid, "labels")
if err := datastore.BlockOnUpdating(uuid, "bodies"); err != nil {
t.Fatalf("Error blocking on sync of labels -> bodies: %v\n", err)
}
// Create a ROI that will be used for filter test.
server.CreateTestInstance(t, uuid, "roi", "myroi", config)
roiRequest := fmt.Sprintf("%snode/%s/myroi/roi", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", roiRequest, getROIReader())
// Create the filter spec
fs := storage.FilterSpec(fmt.Sprintf("roi:myroi,%s", uuid))
var filter storage.Filter
filterer, ok := d.(storage.Filterer)
if !ok {
t.Fatalf("labelvol instance does not implement storage.Filterer\n")
}
filter, err = filterer.NewFilter(fs)
if err != nil {
t.Fatalf("Can't create filter from spec %q: %v\n", fs, err)
}
if filter == nil {
t.Fatalf("No filter could be created from spec %q\n", fs)
}
// Test the filter.
tkv := storage.TKeyValue{K: NewTKey(23, dvid.ChunkPoint3d{0, 0, 0}.ToIZYXString())}
skip, err := filter.Check(&tkv)
if !skip {
t.Errorf("Expected filter check 1 to skip, instead filter.Check() returned not skip")
}
tkv = storage.TKeyValue{K: NewTKey(23, dvid.ChunkPoint3d{1, 1, 1}.ToIZYXString())}
skip, err = filter.Check(&tkv)
if skip {
t.Errorf("Expected filter check 2 to not skip!")
}
tkv = storage.TKeyValue{K: NewTKey(23, dvid.ChunkPoint3d{2, 1, 2}.ToIZYXString())}
skip, err = filter.Check(&tkv)
if skip {
t.Errorf("Expected filter check 2 to not skip!")
}
tkv = storage.TKeyValue{K: NewTKey(23, dvid.ChunkPoint3d{3, 1, 1}.ToIZYXString())}
skip, err = filter.Check(&tkv)
if !skip {
t.Errorf("Expected filter check 3 to skip!")
}
}
func TestMultiscale(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create testbed volume and data instances
uuid, _ := initTestRepo()
var config dvid.Config
server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
// Add multiscale
server.CreateTestInstance(t, uuid, "labelblk", "labels_1", config) // 64 x 64 x 64
server.CreateTestSync(t, uuid, "labels_1", "labels")
server.CreateTestInstance(t, uuid, "labelblk", "labels_2", config) // 32 x 32 x 32
server.CreateTestSync(t, uuid, "labels_2", "labels_1")
// Create an easily interpreted label volume with a couple of labels.
volume := newTestVolume(128, 128, 128)
volume.addSubvol(dvid.Point3d{40, 40, 40}, dvid.Point3d{40, 40, 40}, 1)
volume.addSubvol(dvid.Point3d{40, 40, 80}, dvid.Point3d{40, 40, 40}, 2)
volume.addSubvol(dvid.Point3d{80, 40, 40}, dvid.Point3d{40, 40, 40}, 13)
volume.addSubvol(dvid.Point3d{40, 80, 40}, dvid.Point3d{40, 40, 40}, 209)
volume.addSubvol(dvid.Point3d{80, 80, 40}, dvid.Point3d{40, 40, 40}, 311)
volume.put(t, uuid, "labels")
// Verify initial ingest for hi-res
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on update for labels: %v\n", err)
}
hires := newTestVolume(128, 128, 128)
hires.get(t, uuid, "labels")
hires.verifyLabel(t, 1, 45, 45, 45)
hires.verifyLabel(t, 2, 50, 50, 100)
hires.verifyLabel(t, 13, 100, 60, 60)
hires.verifyLabel(t, 209, 55, 100, 55)
hires.verifyLabel(t, 311, 81, 81, 41)
// Check the first downres: 64^3
if err := datastore.BlockOnUpdating(uuid, "labels_1"); err != nil {
t.Fatalf("Error blocking on update for labels_1: %v\n", err)
}
downres1 := newTestVolume(64, 64, 64)
downres1.get(t, uuid, "labels_1")
downres1.verifyLabel(t, 1, 30, 30, 30)
downres1.verifyLabel(t, 2, 21, 21, 45)
downres1.verifyLabel(t, 13, 45, 21, 36)
downres1.verifyLabel(t, 209, 21, 50, 35)
downres1.verifyLabel(t, 311, 45, 55, 35)
expected1 := newTestVolume(64, 64, 64)
expected1.addSubvol(dvid.Point3d{20, 20, 20}, dvid.Point3d{20, 20, 20}, 1)
expected1.addSubvol(dvid.Point3d{20, 20, 40}, dvid.Point3d{20, 20, 20}, 2)
expected1.addSubvol(dvid.Point3d{40, 20, 20}, dvid.Point3d{20, 20, 20}, 13)
expected1.addSubvol(dvid.Point3d{20, 40, 20}, dvid.Point3d{20, 20, 20}, 209)
expected1.addSubvol(dvid.Point3d{40, 40, 20}, dvid.Point3d{20, 20, 20}, 311)
if err := downres1.equals(expected1); err != nil {
t.Errorf("1st downres 'labels_1' isn't what is expected: %v\n", err)
}
// Check the second downres to voxel: 32^3
if err := datastore.BlockOnUpdating(uuid, "labels_2"); err != nil {
t.Fatalf("Error blocking on update for labels_2: %v\n", err)
}
expected2 := newTestVolume(32, 32, 32)
expected2.addSubvol(dvid.Point3d{10, 10, 10}, dvid.Point3d{10, 10, 10}, 1)
expected2.addSubvol(dvid.Point3d{10, 10, 20}, dvid.Point3d{10, 10, 10}, 2)
expected2.addSubvol(dvid.Point3d{20, 10, 10}, dvid.Point3d{10, 10, 10}, 13)
expected2.addSubvol(dvid.Point3d{10, 20, 10}, dvid.Point3d{10, 10, 10}, 209)
expected2.addSubvol(dvid.Point3d{20, 20, 10}, dvid.Point3d{10, 10, 10}, 311)
downres2 := newTestVolume(32, 32, 32)
downres2.get(t, uuid, "labels_2")
if err := downres2.equals(expected2); err != nil {
t.Errorf("2nd downres 'labels_2' isn't what is expected: %v\n", err)
}
}
func TestLabelsReload(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create testbed volume and data instances
uuid, _ := initTestRepo()
var config dvid.Config
server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
server.CreateTestInstance(t, uuid, "labelvol", "bodies", config)
// Establish syncs
server.CreateTestSync(t, uuid, "labels", "bodies")
server.CreateTestSync(t, uuid, "bodies", "labels")
// Populate the labels, which should automatically populate the labelvol
_ = createLabelTestVolume(t, uuid, "labels")
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on sync of labels: %v\n", err)
}
// Add annotations without syncing.
server.CreateTestInstance(t, uuid, "annotation", "mysynapses", config)
// PUT first batch of synapses
testJSON, err := json.Marshal(testData)
if err != nil {
t.Fatal(err)
}
url1 := fmt.Sprintf("%snode/%s/mysynapses/elements", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", url1, strings.NewReader(string(testJSON)))
// Add the sync
server.CreateTestSync(t, uuid, "mysynapses", "labels,bodies")
// Do a reload asynchronously
reloadURL := fmt.Sprintf("%snode/%s/mysynapses/reload", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", reloadURL, nil)
// Wait until done.
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of annotations: %v\n", err)
}
// Test if labels were properly denormalized. For the POST we have synchronized label denormalization.
testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel2, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel3, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel3NoRel, "%snode/%s/mysynapses/label/3", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)
// Make change to labelblk and make sure our label synapses have been adjusted (case A)
_ = modifyLabelTestVolume(t, uuid, "labels")
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of labels->annotations: %v\n", err)
}
testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel2a, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel3a, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel4NoRel, "%snode/%s/mysynapses/label/4", server.WebAPIPath, uuid)
// Make change to labelvol and make sure our label synapses have been adjusted (case B).
// Merge 3a into 2a.
testMerge := mergeJSON(`[2, 3]`)
testMerge.send(t, uuid, "bodies")
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on sync of labels: %v\n", err)
}
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of synapses: %v\n", err)
}
if err := datastore.BlockOnUpdating(uuid, "bodies"); err != nil {
t.Fatalf("Error blocking on sync of bodies: %v\n", err)
}
testResponseLabel(t, expectedLabel1, "%snode/%s/mysynapses/label/1?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel2b, "%snode/%s/mysynapses/label/2?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, nil, "%snode/%s/mysynapses/label/3?relationships=true", server.WebAPIPath, uuid)
testResponseLabel(t, expectedLabel4, "%snode/%s/mysynapses/label/4?relationships=true", server.WebAPIPath, uuid)
}
func TestSyncs(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := datastore.NewTestRepo()
var config dvid.Config
server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
server.CreateTestInstance(t, uuid, "labelvol", "bodies", config)
server.CreateTestInstance(t, uuid, "annotation", "synapses", config)
server.CreateTestSync(t, uuid, "synapses", "labels,bodies")
labels, err := labelblk.GetByUUIDName(uuid, "labels")
if err != nil {
t.Fatalf("Can't obtain data instance via GetByUUIDName: %v\n", err)
}
bodies, err := labelvol.GetByUUIDName(uuid, "bodies")
if err != nil {
t.Fatalf("Can't obtain data instance via GetByUUIDName: %v\n", err)
}
synapses, err := annotation.GetByUUIDName(uuid, "synapses")
if err != nil {
t.Fatalf("Couldn't get synapses data instance: %v\n", err)
}
syncs := synapses.SyncedData()
if len(syncs) != 2 {
t.Errorf("Expected 2 syncs, got %d syncs instead.\n", len(syncs))
}
_, found := syncs[labels.DataUUID()]
if !found {
t.Errorf("Expected labels UUID (%d) got: %v\n", labels.DataUUID(), syncs)
}
_, found = syncs[bodies.DataUUID()]
if !found {
t.Errorf("Expected bodies UUID (%d) got: %v\n", bodies.DataUUID(), syncs)
}
server.CreateTestInstance(t, uuid, "labelvol", "bodies2", config)
bodies2, err := labelvol.GetByUUIDName(uuid, "bodies2")
if err != nil {
t.Fatalf("Can't obtain data instance via GetByUUIDName: %v\n", err)
}
server.CreateTestSync(t, uuid, "synapses", "bodies2")
syncs = synapses.SyncedData()
if len(syncs) != 3 {
t.Errorf("Expected 3 syncs, got %d syncs instead.\n", len(syncs))
}
_, found = syncs[labels.DataUUID()]
if !found {
t.Errorf("Expected labels UUID (%d) got: %v\n", labels.DataUUID(), syncs)
}
_, found = syncs[bodies.DataUUID()]
if !found {
t.Errorf("Expected bodies UUID (%d) got: %v\n", bodies.DataUUID(), syncs)
}
_, found = syncs[bodies2.DataUUID()]
if !found {
t.Errorf("Expected bodies2 UUID (%d) got: %v\n", bodies2.DataUUID(), syncs)
}
server.CreateTestInstance(t, uuid, "labelvol", "bodies3", config)
server.CreateTestReplaceSync(t, uuid, "synapses", "bodies3")
syncs = synapses.SyncedData()
if len(syncs) != 1 {
t.Errorf("Expected 1 sync, got %d syncs instead.\n", len(syncs))
}
bodies3, err := labelvol.GetByUUIDName(uuid, "bodies3")
if err != nil {
t.Fatalf("Can't obtain data instance via GetByUUIDName: %v\n", err)
}
_, found = syncs[bodies3.DataUUID()]
if !found {
t.Errorf("Expected bodies3 UUID (%d) got: %v\n", bodies3.DataUUID(), syncs)
}
server.CreateTestReplaceSync(t, uuid, "synapses", "")
syncs = synapses.SyncedData()
if len(syncs) != 0 {
t.Errorf("Expected 0 sync, got instead %v\n", syncs)
}
}
func TestLabels(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create testbed volume and data instances
uuid, _ := datastore.NewTestRepo()
var config dvid.Config
server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
server.CreateTestInstance(t, uuid, "labelvol", "bodies", config)
// Establish syncs
server.CreateTestSync(t, uuid, "labels", "bodies")
server.CreateTestSync(t, uuid, "bodies", "labels")
// Populate the labels, which should automatically populate the labelvol
_ = createLabelTestVolume(t, uuid, "labels")
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on sync of labels: %v\n", err)
}
// Add annotations syncing with "labels" instance.
server.CreateTestInstance(t, uuid, "annotation", "mysynapses", config)
server.CreateTestSync(t, uuid, "mysynapses", "labels,bodies")
// Create a ROI that will be used for our labelsz.
server.CreateTestInstance(t, uuid, "roi", "myroi", config)
roiRequest := fmt.Sprintf("%snode/%s/myroi/roi", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", roiRequest, getROIReader())
// Create labelsz instances synced to the above annotations.
server.CreateTestInstance(t, uuid, "labelsz", "noroi", config)
server.CreateTestSync(t, uuid, "noroi", "mysynapses")
config.Set("ROI", fmt.Sprintf("myroi,%s", uuid))
server.CreateTestInstance(t, uuid, "labelsz", "withroi", config)
server.CreateTestSync(t, uuid, "withroi", "mysynapses")
// PUT first batch of synapses.
var synapses annotation.Elements
var x, y, z int32
// This should put 31x31x31 (29,791) PostSyn in volume with fewer in label 200 than 300.
// There will be 15 along each dimension from 0 -> 63, then 16 from 64 -> 127.
// Label 100 will have 15 x 31 x 31 = 14415
// Label 200 will have 16 x 31 x 15 = 7440
// Label 300 will have 16 x 31 x 16 = 7936
for z = 4; z < 128; z += 4 {
for y = 4; y < 128; y += 4 {
for x = 4; x < 128; x += 4 {
e := annotation.Element{
annotation.ElementNR{
Pos: dvid.Point3d{x, y, z},
Kind: annotation.PostSyn,
},
[]annotation.Relationship{},
}
synapses = append(synapses, e)
}
}
}
// This should put 32x32x32 (32,768) PreSyn in volume split 1/2, 1/4, 1/4
for z = 2; z < 128; z += 4 {
for y = 2; y < 128; y += 4 {
for x = 2; x < 128; x += 4 {
e := annotation.Element{
annotation.ElementNR{
Pos: dvid.Point3d{x, y, z},
Kind: annotation.PreSyn,
},
[]annotation.Relationship{},
}
synapses = append(synapses, e)
}
}
}
testJSON, err := json.Marshal(synapses)
if err != nil {
t.Fatal(err)
}
url := fmt.Sprintf("%snode/%s/mysynapses/elements", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", url, strings.NewReader(string(testJSON)))
// Check if we have correct sequencing for no ROI labelsz.
if err := datastore.BlockOnUpdating(uuid, "noroi"); err != nil {
t.Fatalf("Error blocking on sync of noroi labelsz: %v\n", err)
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/PreSyn", server.WebAPIPath, uuid)
data := server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":16384},{"Label":200,"Size":8192},{"Label":300,"Size":8192}]` {
t.Errorf("Got back incorrect PreSyn noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/count/100/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `{"Label":100,"PreSyn":16384}` {
t.Errorf("Got back incorrect PreSyn noroi count for label 100:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/count/200/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `{"Label":200,"PreSyn":8192}` {
t.Errorf("Got back incorrect PreSyn noroi count for label 200:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":14415},{"Label":300,"Size":7936},{"Label":200,"Size":7440}]` {
t.Errorf("Got back incorrect PostSyn noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":30799},{"Label":300,"Size":16128},{"Label":200,"Size":15632}]` {
t.Errorf("Got back incorrect AllSync noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/threshold/15633/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":30799},{"Label":300,"Size":16128}]` {
t.Errorf("Got back incorrect AllSyn noroi threshold:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/threshold/1000/AllSyn?offset=1&n=2", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":300,"Size":16128},{"Label":200,"Size":15632}]` {
t.Errorf("Got back incorrect AllSyn noroi threshold:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/threshold/1000/AllSyn?offset=8&n=2", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[]` {
t.Errorf("Got back incorrect AllSyn noroi threshold:\n%v\n", string(data))
}
// Check if we have correct sequencing for ROI labelsz.
// ROI constitutes the inner eight 32^3 blocks.
// There are 16 PostSyn in each ROI dimension.
// There are also 16 PreSyn in each ROI dimension.
if err := datastore.BlockOnUpdating(uuid, "withroi"); err != nil {
t.Fatalf("Error blocking on sync of withroi labelsz: %v\n", err)
}
url = fmt.Sprintf("%snode/%s/withroi/top/0/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[]` {
t.Errorf("Incorrectly handled top n=0 case, expected [] got: %v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/withroi/top/3/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":2048},{"Label":200,"Size":1024},{"Label":300,"Size":1024}]` {
t.Errorf("Got back incorrect PreSyn withroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/withroi/top/3/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":2048},{"Label":200,"Size":1024},{"Label":300,"Size":1024}]` {
t.Errorf("Got back incorrect PostSyn withroi ranking:\n%v\n", string(data))
}
// Check fewer and larger N requests.
url = fmt.Sprintf("%snode/%s/noroi/top/2/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":16384},{"Label":200,"Size":8192}]` {
t.Errorf("Got back incorrect N=2 ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/4/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":16384},{"Label":200,"Size":8192},{"Label":300,"Size":8192}]` {
t.Errorf("Got back incorrect N=4 ranking:\n%v\n", string(data))
}
// Test annotation move of a PostSyn from label 100->300 and also label 200->300
url = fmt.Sprintf("%snode/%s/mysynapses/move/32_32_32/75_21_69", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", url, nil)
url = fmt.Sprintf("%snode/%s/mysynapses/move/68_20_20/77_21_69", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", url, nil)
if err := datastore.BlockOnUpdating(uuid, "noroi"); err != nil {
t.Fatalf("Error blocking on sync of noroi labelsz: %v\n", err)
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":14414},{"Label":300,"Size":7938},{"Label":200,"Size":7439}]` {
t.Errorf("Got back incorrect PostSyn noroi ranking after move from label 100->300:\n%v\n", string(data))
}
// First move took synapse out of ROI so there should be one less for label 100.
if err := datastore.BlockOnUpdating(uuid, "withroi"); err != nil {
t.Fatalf("Error blocking on sync of labelsz: %v\n", err)
}
url = fmt.Sprintf("%snode/%s/withroi/top/5/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":2047},{"Label":200,"Size":1024},{"Label":300,"Size":1024}]` {
t.Errorf("Got back incorrect post-move PostSyn withroi ranking:\n%v\n", string(data))
}
// Test annotation deletion of moved PostSyn from label 300
url = fmt.Sprintf("%snode/%s/mysynapses/element/75_21_69", server.WebAPIPath, uuid)
server.TestHTTP(t, "DELETE", url, nil)
url = fmt.Sprintf("%snode/%s/mysynapses/element/77_21_69", server.WebAPIPath, uuid)
server.TestHTTP(t, "DELETE", url, nil)
if err := datastore.BlockOnUpdating(uuid, "noroi"); err != nil {
t.Fatalf("Error blocking on sync of noroi labelsz: %v\n", err)
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":14414},{"Label":300,"Size":7936},{"Label":200,"Size":7439}]` {
t.Errorf("Got back incorrect PostSyn noroi ranking after deletions from label 300:\n%v\n", string(data))
}
// Check sync on merge.
if err := datastore.BlockOnUpdating(uuid, "bodies"); err != nil {
t.Fatalf("Error blocking on sync of bodies: %v\n", err)
}
testMerge := mergeJSON(`[200, 300]`)
testMerge.send(t, uuid, "bodies")
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on sync of labels: %v\n", err)
}
time.Sleep(1 * time.Second)
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of synapses: %v\n", err)
}
if err := datastore.BlockOnUpdating(uuid, "noroi"); err != nil {
t.Fatalf("Error blocking on sync of labelsz: %v\n", err)
}
if err := datastore.BlockOnUpdating(uuid, "withroi"); err != nil {
t.Fatalf("Error blocking on sync of labelsz: %v\n", err)
}
url = fmt.Sprintf("%snode/%s/withroi/top/5/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":2048},{"Label":100,"Size":2047}]` {
t.Errorf("Got back incorrect post-merge PostSyn withroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/withroi/count/100/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `{"Label":100,"PostSyn":2047}` {
t.Errorf("Got back incorrect post-merge PostSyn withroi count of label 100:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":16384},{"Label":200,"Size":16384}]` {
t.Errorf("Got back incorrect post-merge PreSyn noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":15375},{"Label":100,"Size":14414}]` {
t.Errorf("Got back incorrect post-merge PostSyn noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":31759},{"Label":100,"Size":30798}]` {
t.Errorf("Got back incorrect post-merge AllSyn noroi ranking:\n%v\n", string(data))
}
// Check threshold endpoint
url = fmt.Sprintf("%snode/%s/withroi/threshold/2048/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":2048}]` {
t.Errorf("Got back incorrect post-merge PostSyn withroi threshold:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/threshold/16384/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":16384},{"Label":200,"Size":16384}]` {
t.Errorf("Got back incorrect post-merge PreSyn noroi threshold:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/threshold/15000/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":15375}]` {
t.Errorf("Got back incorrect post-merge PostSyn noroi threshold:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/threshold/0/PostSyn?offset=1&n=1", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":14414}]` {
t.Errorf("Got back incorrect post-merge PostSyn noroi threshold with offset/n:\n%v\n", string(data))
}
// Create the sparsevol encoding for split area with label 100 -> 150.
// Split has offset (0, 0, 0) with size (19, 19, 19).
// PreSyn in split = 5 x 5 x 5 = 125
// PostSyn in split = 4 x 4 x 4 = 64
var rles dvid.RLEs
for z := int32(0); z < 19; z++ {
for y := int32(0); y < 19; y++ {
start := dvid.Point3d{0, y, z}
rles = append(rles, dvid.NewRLE(start, 19))
}
}
buf := getBytesRLE(t, rles)
// Submit the split sparsevol
url = fmt.Sprintf("%snode/%s/%s/split/%d?splitlabel=150", server.WebAPIPath, uuid, "bodies", 100)
data = server.TestHTTP(t, "POST", url, buf)
jsonVal := make(map[string]uint64)
if err := json.Unmarshal(data, &jsonVal); err != nil {
t.Errorf("Unable to get new label from split. Instead got: %v\n", jsonVal)
}
// Check sync on split.
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on sync of labels: %v\n", err)
}
time.Sleep(1 * time.Second)
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of synapses: %v\n", err)
}
if err := datastore.BlockOnUpdating(uuid, "noroi"); err != nil {
t.Fatalf("Error blocking on sync of labelsz: %v\n", err)
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":16384},{"Label":100,"Size":16259},{"Label":150,"Size":125}]` {
t.Errorf("Got back incorrect post-split PreSyn noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/3/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":15375},{"Label":100,"Size":14350},{"Label":150,"Size":64}]` {
t.Errorf("Got back incorrect post-split PostSyn noroi ranking:\n%v\n", string(data))
}
// Create the encoding for coarse split area in block coordinates from label 200.
// Split has offset (64, 96, 96) with size (64, 32, 32).
// PreSyn in split = 16 x 8 x 8 = 1024
// PostSyn in split = 16 x 8 x 8 = 1024
rles = dvid.RLEs{
dvid.NewRLE(dvid.Point3d{2, 3, 3}, 2),
}
buf = getBytesRLE(t, rles)
// Submit the coarse split of 200 -> 250
url = fmt.Sprintf("%snode/%s/%s/split-coarse/200?splitlabel=250", server.WebAPIPath, uuid, "bodies")
data = server.TestHTTP(t, "POST", url, buf)
jsonVal = make(map[string]uint64)
if err := json.Unmarshal(data, &jsonVal); err != nil {
t.Errorf("Unable to get new label from split. Instead got: %v\n", jsonVal)
}
// Check sync on split.
if err := datastore.BlockOnUpdating(uuid, "labels"); err != nil {
t.Fatalf("Error blocking on sync of labels: %v\n", err)
}
time.Sleep(1 * time.Second)
if err := datastore.BlockOnUpdating(uuid, "mysynapses"); err != nil {
t.Fatalf("Error blocking on sync of synapses: %v\n", err)
}
if err := datastore.BlockOnUpdating(uuid, "noroi"); err != nil {
t.Fatalf("Error blocking on sync of labelsz: %v\n", err)
}
url = fmt.Sprintf("%snode/%s/noroi/top/5/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":16259},{"Label":200,"Size":15360},{"Label":250,"Size":1024},{"Label":150,"Size":125}]` {
t.Errorf("Got back incorrect post-coarsesplit PreSyn noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/5/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":14351},{"Label":100,"Size":14350},{"Label":250,"Size":1024},{"Label":150,"Size":64}]` {
t.Errorf("Got back incorrect post-coarsesplit PostSyn noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/top/5/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":30609},{"Label":200,"Size":29711},{"Label":250,"Size":2048},{"Label":150,"Size":189}]` {
t.Errorf("Got back incorrect post-coarsesplit AllSyn noroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/noroi/count/200/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `{"Label":200,"AllSyn":29711}` {
t.Errorf("Got back incorrect post-coarsesplit AllSyn noroi count of label 200:\n%v\n", string(data))
}
// Check the ROI-restricted labelsz instance which should only be affected by merge.
url = fmt.Sprintf("%snode/%s/withroi/top/5/PreSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":100,"Size":2048},{"Label":200,"Size":2048}]` {
t.Errorf("Got back incorrect post-coarsesplit PreSyn withroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/withroi/top/5/PostSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":2048},{"Label":100,"Size":2047}]` {
t.Errorf("Got back incorrect post-coarsesplit PostSyn withroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/withroi/top/5/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `[{"Label":200,"Size":4096},{"Label":100,"Size":4095}]` {
t.Errorf("Got back incorrect post-coarsesplit AllSyn withroi ranking:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/withroi/count/200/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `{"Label":200,"AllSyn":4096}` {
t.Errorf("Got back incorrect post-coarsesplit AllSyn withroi count of label 200:\n%v\n", string(data))
}
url = fmt.Sprintf("%snode/%s/withroi/count/100/AllSyn", server.WebAPIPath, uuid)
data = server.TestHTTP(t, "GET", url, nil)
if string(data) != `{"Label":100,"AllSyn":4095}` {
t.Errorf("Got back incorrect post-coarsesplit AllSyn withroi count of label 100:\n%v\n", string(data))
}
}