func TestSecondPass(t *testing.T) {
var ncTest lib.Nc
var m config.Map
var cfg toml.Configtoml
var optDebug *bool
filetoml := "../configfile/configtoml.toml"
cfg = toml.InitToml(filetoml)
m = config.InitMap()
ncTest.Extras_s = make(map[string]string)
ncTest.Extras_f = make(map[string]float64)
ncTest.Variables_1D = make(map[string]interface{})
ncTest.Variables_1D["TIME"] = []float64{}
ncTest.Variables_1D["LATITUDE"] = []float64{}
ncTest.Variables_1D["LONGITUDE"] = []float64{}
ncTest.Variables_1D["PROFILE"] = []float64{}
profile := GetProfileNumber(&ncTest, 0)
TestFile := []string{"../data/20150718-114047-AT_COLCOR.COLCOR"}
secondPassTHERMO(&ncTest, &m, cfg, TestFile, optDebug)
fmt.Println("Time start :", ncTest.Extras_s[fmt.Sprintf("Starttime:%d", int(profile))])
fmt.Println("Latitude start :", ncTest.Extras_s[fmt.Sprintf("Startlatpos:%d", int(profile))])
fmt.Println("Longitude start :", ncTest.Extras_s[fmt.Sprintf("Startlongpos:%d", int(profile))])
}
func TestSecondPass(t *testing.T) {
var ncTest lib.Nc
var m config.Map
var cfg toml.Configtoml
var optDebug *bool
filetoml := "../configfile/configtoml.toml"
cfg = toml.InitToml(filetoml)
m = config.InitMap()
ncTest.Extras_s = make(map[string]string)
ncTest.Extras_f = make(map[string]float64)
ncTest.Variables_1D = make(map[string]interface{})
ncTest.Variables_1D["TIME"] = []float64{}
ncTest.Variables_1D["LATITUDE"] = []float64{}
ncTest.Variables_1D["LONGITUDE"] = []float64{}
ncTest.Variables_1D["PROFILE"] = []float64{}
TestFile := []string{"../data/csp00201.lad"}
secondPassLADCP(&ncTest, &m, cfg, TestFile, optDebug)
fmt.Println("Time :", ncTest.Variables_1D["TIME"])
fmt.Println("Latitude :", ncTest.Variables_1D["LATITUDE"])
fmt.Println("Longitude :", ncTest.Variables_1D["LONGITUDE"])
}
//function for testing GetProfileNumber
func TestGetProfile(t *testing.T) {
// variable for test
var ncTest lib.Nc
ncTest.Extras_s = make(map[string]string)
Profile := GetProfileNumber(&ncTest, 1)
fmt.Println("Profile THERMO Number : ", Profile)
}
// read cnv files in two pass, the first to get dimensions
// second to get data
func ReadSeabird(nc *lib.Nc, m *config.Map, filestruct analyze.Structfile, cfg toml.Configtoml, files []string, optCfgfile string, optAll *bool, optDebug *bool, prefixAll string) {
switch {
case filestruct.Instrument == cfg.Instrument.Type[0]:
config.GetConfigCTD(nc, m, cfg, optCfgfile, filestruct.TypeInstrument, optAll)
// first pass, return dimensions fron cnv files
nc.Dimensions["TIME"], nc.Dimensions["DEPTH"] = firstPassCTD(nc, m, cfg, files)
// initialize 2D data
nc.Variables_2D = make(lib.AllData_2D)
for i, _ := range m.Map_var {
nc.Variables_2D.NewData_2D(i, nc.Dimensions["TIME"], nc.Dimensions["DEPTH"])
}
// second pass, read files again, extract data and fill slices
secondPassCTD(nc, m, cfg, files, optDebug)
// write ASCII file
WriteAscii(nc, cfg, m.Map_format, m.Hdr, filestruct.Instrument, prefixAll)
// write netcdf file
//if err := nc.WriteNetcdf(); err != nil {
//log.Fatal(err)
//}
netcdf.WriteNetcdf(nc, m, cfg, filestruct.Instrument, prefixAll)
case filestruct.Instrument == cfg.Instrument.Type[1]:
config.GetConfigBTL(nc, m, cfg, optCfgfile, filestruct.TypeInstrument)
// first pass, return dimensions fron btl files
nc.Dimensions["TIME"], nc.Dimensions["DEPTH"] = firstPassBTL(nc, m, cfg, files)
// initialize 2D data
nc.Variables_2D = make(lib.AllData_2D)
for i, _ := range m.Map_var {
nc.Variables_2D.NewData_2D(i, nc.Dimensions["TIME"], nc.Dimensions["DEPTH"])
}
// second pass, read files again, extract data and fill slices
secondPassBTL(nc, m, cfg, files, optDebug)
// write ASCII file
WriteAscii(nc, cfg, m.Map_format, m.Hdr, filestruct.Instrument, prefixAll)
// write netcdf file
//if err := nc.WriteNetcdf(); err != nil {
//log.Fatal(err)
//}
netcdf.WriteNetcdf(nc, m, cfg, filestruct.Instrument, prefixAll)
}
}
//function for testing GetProfileNumber
func TestGetProfile(t *testing.T) {
// variable for test
fileconfigTest := "../configfile/configtoml.toml"
var cfg toml.Configtoml
var ncTest lib.Nc
cfg = toml.InitToml(fileconfigTest)
ncTest.Extras_s = make(map[string]string)
TestFile := "../data/csp00201.cnv"
Profile := GetProfileNumber(&ncTest, cfg, TestFile)
fmt.Println("Profile CTD Number : ", Profile)
}
func TestFirstPass(t *testing.T) {
var ncTest lib.Nc
var m config.Map
var cfg toml.Configtoml
filetoml := "../configfile/configtoml.toml"
cfg = toml.InitToml(filetoml)
m = config.InitMap()
ncTest.Extras_s = make(map[string]string)
ncTest.Extras_f = make(map[string]float64)
TestFile := []string{"../data/csp00201.lad"}
time, depth := firstPassLADCP(&ncTest, &m, cfg, TestFile)
fmt.Println("Time : ", time)
fmt.Println("Depth : ", depth)
}
func TestFirstPass(t *testing.T) {
var ncTest lib.Nc
var m config.Map
var cfg toml.Configtoml
filetoml := "../configfile/configtoml.toml"
cfg = toml.InitToml(filetoml)
m = config.InitMap()
ncTest.Extras_s = make(map[string]string)
ncTest.Extras_f = make(map[string]float64)
TestFile := []string{"../data/20150718-114047-AT_COLCOR.COLCOR"}
time, depth := firstPassTHERMO(&ncTest, &m, cfg, TestFile)
fmt.Println("Time : ", time)
fmt.Println("Depth : ", depth)
}
func TestSecondPass(t *testing.T) {
var ncTest lib.Nc
var m config.Map
var cfg toml.Configtoml
var optDebug *bool
filetoml := "../configfile/configtoml.toml"
cfg = toml.InitToml(filetoml)
m = config.InitMap()
ncTest.Dimensions = make(map[string]int)
ncTest.Attributes = make(map[string]string)
ncTest.Extras_f = make(map[string]float64)
ncTest.Extras_s = make(map[string]string)
ncTest.Variables_1D = make(map[string]interface{})
// initialize map entry from nil interface to empty slice of float64
ncTest.Variables_1D["PROFILE"] = []float64{}
ncTest.Variables_1D["TIME"] = []float64{}
ncTest.Variables_1D["LATITUDE"] = []float64{}
ncTest.Variables_1D["LONGITUDE"] = []float64{}
ncTest.Variables_1D["BATH"] = []float64{}
ncTest.Variables_1D["TYPECAST"] = []float64{}
TestFile := []string{"../data/csp00101.btl"}
secondPassBTL(&ncTest, &m, cfg, TestFile, optDebug)
fmt.Println("Time :", ncTest.Variables_1D["TIME"])
fmt.Println("Latitude :", ncTest.Variables_1D["LATITUDE"])
fmt.Println("Longitude :", ncTest.Variables_1D["LONGITUDE"])
}
//function for testing Decodedata
func TestDecodeData(t *testing.T) {
// variable for test
var ncTest lib.Nc
var m config.Map
m = config.InitMap()
ncTest.Extras_s = make(map[string]string)
fmt.Println("Debut fichier THERMO :")
TestFile := "../data/FileTestDecodeData5.TEST"
var profileTest float64 = 1
var line int = 0
fid, err := os.Open(TestFile)
if err != nil {
log.Fatal(err)
}
defer fid.Close()
scanner := bufio.NewScanner(fid)
for scanner.Scan() {
str := scanner.Text()
DecodeData(&ncTest, &m, str, profileTest, TestFile, line)
line++
}
if err := scanner.Err(); err != nil {
log.Fatal(err)
}
fmt.Println("Number of line : ", line)
}
func TestDecodeHeader(t *testing.T) {
// variable for test
var cfg toml.Configtoml
var fileconfig string
var ncTest lib.Nc
var optDebug *bool
fileconfigTest := "../configfile/configtoml.toml"
cfg = toml.InitToml(fileconfigTest)
fmt.Println("fileconfig ", fileconfig)
ncTest.Dimensions = make(map[string]int)
ncTest.Attributes = make(map[string]string)
ncTest.Extras_f = make(map[string]float64)
ncTest.Extras_s = make(map[string]string)
ncTest.Variables_1D = make(map[string]interface{})
// initialize map entry from nil interface to empty slice of float64
ncTest.Variables_1D["TIME"] = []float64{}
ncTest.Variables_1D["LATITUDE"] = []float64{}
ncTest.Variables_1D["LONGITUDE"] = []float64{}
var profileTest float64 = 00001
//var StringTest string = "Date = 2015/07/24"
//var StringTest string = "Start_Time = 06:11:23"
//var StringTest string = "Latitude = -10.9877"
var StringTest string = "Longitude : 24 12.78809W"
temp := regexp.MustCompile(cfg.Mk21.Longitude)
fmt.Println(cfg.Mk21.Longitude)
fmt.Println(StringTest)
if temp.MatchString(StringTest) {
fmt.Println("same")
} else {
fmt.Println("not same")
}
DecodeHeader(&ncTest, cfg, StringTest, profileTest, optDebug)
}
//function for testing Decodeheader
func TestDecodeHeader(t *testing.T) {
// variable for test
var cfg toml.Configtoml
var ncTest lib.Nc
var optDebug *bool
fileconfigTest := "../configfile/configtoml.toml"
cfg = toml.InitToml(fileconfigTest)
ncTest.Dimensions = make(map[string]int)
ncTest.Attributes = make(map[string]string)
ncTest.Extras_f = make(map[string]float64)
ncTest.Extras_s = make(map[string]string)
ncTest.Variables_1D = make(map[string]interface{})
// initialize map entry from nil interface to empty slice of float64
ncTest.Variables_1D["PROFILE"] = []float64{}
ncTest.Variables_1D["TIME"] = []float64{}
ncTest.Variables_1D["LATITUDE"] = []float64{}
ncTest.Variables_1D["LONGITUDE"] = []float64{}
ncTest.Variables_1D["BATH"] = []float64{}
ncTest.Variables_1D["TYPECAST"] = []float64{}
var profileTest float64 = 00101
var StringTest string = "* System UpLoad Time = Jul 20 2015 06:15:13"
//var StringTest string = "* NMEA Latitude = 19 58.55 S"
//var StringTest string = "* NMEA Longitude = 168 00.45 E"
//var StringTest string = "** Cruise : CASSIOPEE"
//var StringTest string = "** Station : 00101"
//var StringTest string = "** Bottom Depth: 4937"
//var StringTest string = "** Operator: JG-GE-ESL"
//var StringTest string = "** Type: PHY"
fmt.Println(cfg.Seabird.SystemTime)
temp := regexp.MustCompile(cfg.Seabird.SystemTime)
if temp.MatchString(StringTest) {
fmt.Println("same")
} else {
fmt.Println("not same")
}
DecodeHeader(&ncTest, cfg, StringTest, profileTest, optDebug)
}
func GetConfigXBT(nc *lib.Nc, m *Map, cfg toml.Configtoml, configFile string, Type string, optAll *bool) {
// var split, header, format string
var split []string
// define map from netcdf structure
nc.Dimensions = make(map[string]int)
nc.Attributes = make(map[string]string)
nc.Extras_f = make(map[string]float64)
nc.Extras_s = make(map[string]string)
nc.Variables_1D = make(map[string]interface{})
// initialize map entry from nil interface to empty slice of float64
nc.Variables_1D["PROFILE"] = []float64{}
nc.Variables_1D["TIME"] = []float64{}
nc.Variables_1D["LATITUDE"] = []float64{}
nc.Variables_1D["LONGITUDE"] = []float64{}
nc.Variables_1D["TYPECAST"] = []float64{}
nc.Roscop = roscop.NewRoscop(cfg.Roscopfile)
// add some global attributes for profile, change in future
nc.Attributes["data_type"] = Type
split = cfg.Xbt.Split
// stationPrefixLength = cfg.Ctd.StationPrefixLength
// TODOS: complete
nc.Attributes["cycle_mesure"] = cfg.Cruise.CycleMesure
nc.Attributes["plateforme"] = cfg.Cruise.Plateforme
nc.Attributes["institute"] = cfg.Cruise.Institute
nc.Attributes["pi"] = cfg.Cruise.Pi
nc.Attributes["timezone"] = cfg.Cruise.Timezone
nc.Attributes["begin_date"] = cfg.Cruise.BeginDate
nc.Attributes["end_date"] = cfg.Cruise.EndDate
nc.Attributes["creator"] = cfg.Cruise.Creator
nc.Attributes["type_instrument"] = cfg.Xbt.TypeInstrument
nc.Attributes["instrument_number"] = cfg.Xbt.InstrumentNumber
// add specific column(s) to the first header line in ascii file
// First column should be PRFL
m.Hdr = append(m.Hdr, "PRFL")
// fill map_var from split (read in .ini configuration file)
// store the position (column) of each physical parameter
var fields []string
fields = split
fmt.Fprintln(lib.Debug, "getConfig: ", fields)
// construct header slice from split
for i := 0; i < len(fields); i += 2 {
if v, err := strconv.Atoi(fields[i+1]); err == nil {
m.Map_var[fields[i]] = v - 1
m.Hdr = append(m.Hdr, fields[i])
}
}
fmt.Fprintln(lib.Debug, "getConfig: ", m.Hdr)
// fill map_format from code_roscop
for _, key := range m.Hdr {
m.Map_format[key] = nc.Roscop.GetAttributesM(key, "format")
}
}