//LoadCases will load data stored case by case from a cvs reader into a
//feature matrix that has allready been filled with the coresponding empty
//features. It is a lower level method generally called after inital setup to parse
//a fm, arff, csv etc.
func (fm *FeatureMatrix) LoadCases(data *csv.Reader, rowlabels bool) {
count := 0
for {
record, err := data.Read()
if err == io.EOF {
break
} else if err != nil {
log.Print("Error:", err)
break
}
caselabel := fmt.Sprintf("%v", count)
if rowlabels {
caselabel = record[0]
record = record[1:]
}
fm.CaseLabels = append(fm.CaseLabels, caselabel)
for i, v := range record {
fm.Data[i].Append(v)
}
count++
}
}
// Read takes a CSV reader and reads it into a typed List of structs. Each row gets read into a struct named structName, described by headers. If the original data contained headers it is expected that the input reader has already read those and are pointing at the first data row.
// If kinds is non-empty, it will be used to type the fields in the generated structs; otherwise, they will be left as string-fields.
// In addition to the list, Read returns the typeRef for the structs in the list, and last the typeDef of the structs.
func Read(r *csv.Reader, structName string, headers []string, kinds KindSlice, vrw types.ValueReadWriter) (l types.List, typeRef, typeDef types.Type) {
typeRef, typeDef = MakeStructTypeFromHeaders(headers, structName, kinds)
valueChan := make(chan types.Value, 128) // TODO: Make this a function param?
listType := types.MakeCompoundType(types.ListKind, typeRef)
listChan := types.NewStreamingTypedList(listType, vrw, valueChan)
structFields := typeDef.Desc.(types.StructDesc).Fields
for {
row, err := r.Read()
if err == io.EOF {
close(valueChan)
break
} else if err != nil {
panic(err)
}
fields := make(map[string]types.Value)
for i, v := range row {
if i < len(headers) {
f := structFields[i]
fields[f.Name] = StringToType(v, f.T.Kind())
}
}
valueChan <- types.NewStruct(typeRef, typeDef, fields)
}
return <-listChan, typeRef, typeDef
}
// streamCsv
// Streams a CSV Reader into a returned channel. Each CSV row is streamed along with the header.
// "true" is sent to the `done` channel when the file is finished.
//
// Args
// csv - The csv.Reader that will be read from.
// buffer - The "lines" buffer factor. Send "0" for an unbuffered channel.
func streamCsv(csv *csv.Reader, buffer int) (lines chan *CsvLine) {
lines = make(chan *CsvLine, buffer)
go func() {
// get Header
header, err := csv.Read()
if err != nil {
close(lines)
return
}
i := 0
for {
line, err := csv.Read()
if len(line) > 0 {
i++
lines <- &CsvLine{Header: header, Line: line}
}
if err != nil {
fmt.Printf("Sent %d lines\n", i)
close(lines)
return
}
}
}()
return
}
// Reads the census CSV data from files
func unmarshalCensusData(reader *csv.Reader, v interface{}) error {
record, err := reader.Read()
if err != nil {
return err
}
s := reflect.ValueOf(v).Elem()
if s.NumField() != len(record) {
return &csvFieldMismatch{s.NumField(), len(record)}
}
for i := 0; i < s.NumField(); i++ {
f := s.Field(i)
switch f.Type().String() {
case "string":
f.SetString(record[i])
case "int":
ival, err := strconv.ParseInt(record[i], 10, 0)
if err != nil {
return err
}
f.SetInt(ival)
case "float64":
fval, err := strconv.ParseFloat(record[i], 64)
if err != nil {
return err
}
f.SetFloat(fval)
default:
return &csvUnsupportedType{f.Type().String()}
}
}
return nil
}
// Parse columns from first header row or from flags
func parseColumns(reader *csv.Reader, skipHeader bool, fields string) ([]string, error) {
var err error
var columns []string
if fields != "" {
columns = strings.Split(fields, ",")
if skipHeader {
reader.Read() //Force consume one row
}
} else {
columns, err = reader.Read()
if err != nil {
return nil, err
}
}
for _, col := range columns {
if containsDelimiter(col) {
return columns, errors.New("Please specify the correct delimiter with -d.\nHeader column contains a delimiter character: " + col)
}
}
for i, col := range columns {
columns[i] = postgresify(col)
}
return columns, nil
}
// User CSV
// Fields are stored in the sequence as they appear in the struct, with arrays
// being represented as semicolon separated lists.
// Create a new user read from a CSV reader
func NewUserFromCSV(reader *csv.Reader) (user *User, done bool) {
line, err := reader.Read()
if err != nil {
return nil, true
}
if len(line) != 7 {
return nil, false
}
// comment
firstElement := strings.TrimSpace(line[0])
if len(firstElement) > 0 && firstElement[0] == '#' {
return nil, false
}
level := line[2]
ValidFrom, _ := time.Parse("2006-01-02 15:04", line[4])
ValidTo, _ := time.Parse("2006-01-02 15:04", line[5])
if !isValidLevel(level) {
log.Printf("Got invalid level '%s'", level)
return nil, false
}
return &User{
Name: line[0],
ContactInfo: line[1],
UserLevel: Level(level),
Sponsors: strings.Split(line[3], ";"),
ValidFrom: ValidFrom, // field 4
ValidTo: ValidTo, // field 5
Codes: strings.Split(line[6], ";")},
false
}
// Read takes a CSV reader and reads it into a typed List of structs. Each row gets read into a struct named structName, described by headers. If the original data contained headers it is expected that the input reader has already read those and are pointing at the first data row.
// If kinds is non-empty, it will be used to type the fields in the generated structs; otherwise, they will be left as string-fields.
// In addition to the list, Read returns the typeRef for the structs in the list, and last the typeDef of the structs.
func ReadToList(r *csv.Reader, structName string, headers []string, kinds KindSlice, vrw types.ValueReadWriter) (l types.List, t *types.Type) {
t, fieldOrder, kindMap := MakeStructTypeFromHeaders(headers, structName, kinds)
valueChan := make(chan types.Value, 128) // TODO: Make this a function param?
listChan := types.NewStreamingList(vrw, valueChan)
for {
row, err := r.Read()
if err == io.EOF {
close(valueChan)
break
} else if err != nil {
panic(err)
}
fields := make(types.ValueSlice, len(headers))
for i, v := range row {
if i < len(headers) {
fieldOrigIndex := fieldOrder[i]
val, err := StringToValue(v, kindMap[fieldOrigIndex])
if err != nil {
d.Chk.Fail(fmt.Sprintf("Error parsing value for column '%s': %s", headers[i], err))
}
fields[fieldOrigIndex] = val
}
}
valueChan <- types.NewStructWithType(t, fields)
}
return <-listChan, t
}
func read_record(csv_reader *csv.Reader) (loadedRecord, error) {
row, err := csv_reader.Read()
if err != nil {
return loadedRecord{}, err
}
if err != nil {
panic(err)
}
var id, key string
if len(row) == 2 {
id, key = row[0], row[1]
} else {
key = row[0]
}
numeric, _ := regexp.Compile("[0-9]")
new_key := numeric.ReplaceAllString(key, "")
new_key = strings.ToLower(new_key)
record := loadedRecord{
id: id,
key: new_key,
original_key: key,
length: len(new_key) - 2,
}
record.trigrams = create_trigram(new_key, record.length)
return record, nil
}
func readCsv(ch chan []string) {
var reader *csv.Reader
if inputFn == "" {
reader = csv.NewReader(os.Stdin)
} else {
file, err := os.Open(inputFn)
if err != nil {
fmt.Println("Error:", err)
os.Exit(1)
}
defer file.Close()
reader = csv.NewReader(file)
}
if !strictLen {
reader.FieldsPerRecord = -1
}
r, _ := utf8.DecodeRuneInString(inputSep)
reader.Comma = r
reader.LazyQuotes = lazyQuotes
for {
record, err := reader.Read()
if err == io.EOF {
close(ch)
break
} else if err != nil {
fmt.Println("Error:", err)
close(ch)
break
}
ch <- record
}
}
func (t *table) start(reader *csv.Reader) {
defer t.Stop()
defer close(t.rows)
headers, err := reader.Read()
if err != nil {
if perr, ok := err.(*csv.ParseError); ok {
// Modifies the underlying err
perr.Err = fmt.Errorf("%s. %s", perr.Err, "This can happen when the CSV is malformed, or when the wrong delimiter is used")
}
t.handleErr(err)
return
}
reader.FieldsPerRecord = len(headers)
for {
if t.stopped {
break
}
line, err := reader.Read()
if err != nil {
t.handleErr(err)
return
}
t.rows <- convertLineToRow(line, headers)
}
}
func processFile(reader *csv.Reader, keyIndex, valueIndex int, headerRow bool) ([]MapEntry, error) {
entries := []MapEntry{}
for i := 0; true; i++ {
row, err := reader.Read()
if err == io.EOF {
break
}
if err != nil {
return nil, err
}
if headerRow && i == 0 {
continue
}
numFields := len(row)
if keyIndex > numFields {
return nil, fmt.Errorf("key index '%d' > number of fields '%d'", keyIndex, numFields)
}
if valueIndex > numFields {
return nil, fmt.Errorf("value index '%d' > number of fields '%d'", valueIndex, numFields)
}
key := row[keyIndex-1]
value := row[valueIndex-1]
entries = append(entries, MapEntry{key, value})
}
return entries, nil
}
func RecsFromCSVReader(r *csv.Reader, recs map[string][]RepoRelation) error {
for {
record, err := r.Read()
if err == io.EOF {
break
}
if err != nil {
return fmt.Errorf("failed to read csv record: %v", err)
}
if len(record[0]) < prefixLen {
log.Printf("not valid rec record %v", record)
continue
}
sp1 := ShortPathFromURL(record[0])
sp2 := ShortPathFromURL(record[1])
c, err := strconv.ParseFloat(record[2], 64)
if err != nil {
log.Printf("Failed to ParseFloat(%q, 64): %v", record[2], err)
}
recs[sp1] = append(recs[sp1], RepoRelation{sp2, c})
}
for k, _ := range recs {
sort.Sort(ByScore(recs[k]))
}
log.Printf("%v recs has been loaded", len(recs))
return nil
}
func (d *Data) readFeatures(in csv.Reader) {
for {
record, err := in.Read()
if err == io.EOF {
break
}
if err != nil {
fmt.Println("ERROR: ", err)
}
x := len(record)
conv := make([]float64, x, x)
correctData := true
for i := 0; i < x; i++ {
conv[i], err = strconv.ParseFloat(record[i], 64)
if err != nil {
fmt.Println("ERROR: ", err)
correctData = false
}
}
if correctData {
d.AppendRow(conv)
}
}
}
func (d *Data) readHeader(r csv.Reader) {
record, err := r.Read()
if err != nil {
fmt.Println("ERROR: ", err)
}
d.setFeatures(record)
}
func readOneRecordAtaTime(reader *csv.Reader) {
for {
row, err := reader.Read()
if err != nil {
break
}
printRow(row)
}
}
func read(r *csv.Reader, f func(record []string)) {
for {
record, err := r.Read()
if err == io.EOF {
break
} else if err != nil && err != io.EOF {
log.Fatal("Error reading defects file ", err)
}
if record[1] != "Id" {
f(record)
}
}
}
func copyCSVRows(i *Import, reader *csv.Reader, ignoreErrors bool, delimiter string, columns []string) (error, int, int) {
success := 0
failed := 0
for {
cols := make([]interface{}, len(columns))
record, err := reader.Read()
if err == io.EOF {
break
}
if err != nil {
line := strings.Join(record, delimiter)
failed++
if ignoreErrors {
os.Stderr.WriteString(string(line))
continue
} else {
err = errors.New(fmt.Sprintf("%s: %s", err, line))
return err, success, failed
}
}
//Loop ensures we don't insert too many values and that
//values are properly converted into empty interfaces
for i, col := range record {
cols[i] = col
}
err = i.AddRow(cols...)
if err != nil {
line := strings.Join(record, delimiter)
failed++
if ignoreErrors {
os.Stderr.WriteString(string(line))
continue
} else {
err = errors.New(fmt.Sprintf("%s: %s", err, line))
return err, success, failed
}
}
success++
}
return nil, success, failed
}
func SMerge(r *csv.Reader, seek io.Seeker) []int {
var m = make(map[string]int)
var list []string
var repeat []string
r.Read()
var key string
var err error
var line int
for {
list, err = r.Read()
if err != nil {
if err != io.EOF {
log.Println("读取文件内容失败,错误信息:", err.Error())
}
break
}
if len(list) != 5 {
log.Println("无效数据:", list)
line++
continue
}
key = strings.TrimSpace(list[1] + list[3])
if key != "" {
if _, ok := m[key]; ok {
repeat = append(repeat, key)
if !first {
m[key] = line
}
} else {
m[key] = line
}
}
line++
}
var lines = make([]int, 0, len(m))
for _, v := range repeat {
if unrepeat {
delete(m, v)
} else {
lines = append(lines, m[v])
}
}
if unrepeat {
for _, v := range m {
lines = append(lines, v)
}
}
sort.Ints(lines)
return lines
}
func ReadToMap(r *csv.Reader, headersRaw []string, pkIdx int, kinds KindSlice, vrw types.ValueReadWriter) types.Map {
headers := make([]string, 0, len(headersRaw)-1)
for i, h := range headersRaw {
if i != pkIdx {
headers = append(headers, h)
}
}
var pkKind types.NomsKind
if len(kinds) == 0 {
pkKind = types.StringKind
} else {
pkKind = kinds[pkIdx]
kinds = append(kinds[:pkIdx], kinds[pkIdx+1:]...)
}
t, fieldOrder, kindMap := MakeStructTypeFromHeaders(headers, "", kinds)
kvChan := make(chan types.Value, 128)
mapChan := types.NewStreamingMap(vrw, kvChan)
for {
row, err := r.Read()
if err == io.EOF {
break
} else if err != nil {
panic(err)
}
fieldIndex := 0
var pk types.Value
fields := make(types.ValueSlice, len(headers))
for x, v := range row {
if x == pkIdx {
pk, err = StringToValue(v, pkKind)
} else if fieldIndex < len(headers) {
fieldOrigIndex := fieldOrder[fieldIndex]
fields[fieldOrigIndex], err = StringToValue(v, kindMap[fieldOrigIndex])
fieldIndex++
}
if err != nil {
d.Chk.Fail(fmt.Sprintf("Error parsing value for column '%s': %s", headers[x], err))
}
}
kvChan <- pk
kvChan <- types.NewStructWithType(t, fields)
}
close(kvChan)
return <-mapChan
}
func (con Sif2Cx) readSIF(reader *csv.Reader, w *bufio.Writer) {
// Set delimiter
var netName string
if con.Name == "" {
netName = "CX from SIF file"
} else {
netName = con.Name
}
reader.Comma = con.Delimiter
reader.LazyQuotes = true
// nodes already serialized
nodesExists := make(map[string]int64)
nodeCounter := int64(0)
w.Write([]byte("["))
for {
record, err := reader.Read()
if err == io.EOF {
// Add network attributes at the end of doc.
netAttr := cx.NetworkAttribute{N: "name", V: netName}
attrList := []cx.NetworkAttribute{netAttr}
netAttrs := make(map[string][]cx.NetworkAttribute)
netAttrs["networkAttributes"] = attrList
json.NewEncoder(w).Encode(netAttrs)
w.Write([]byte("]"))
w.Flush()
break
}
if err != nil {
log.Fatal(err)
}
if len(record) == 3 {
toJson(record, nodesExists, &nodeCounter, w)
}
w.Flush()
}
}
func Signal(reader *csv.Reader) ([]float64, error) {
fields, err := reader.Read()
if err != nil {
return nil, err
}
ndim := len(fields)
point := make([]float64, ndim)
for i := 0; i < ndim; i++ {
point[i], err = strconv.ParseFloat(fields[i], 64)
if err != nil {
return nil, err
}
}
return point, nil
}
func readHeaders(reader *csv.Reader, filter mapset.Set) (headers map[string]int) {
line, err := reader.Read()
util.Warn(err, "reading headers")
headers = make(map[string]int, len(line))
for i, k := range line {
//if _, ok := c.fields[k]; !ok {
k = util.Slugged(k, "_")
if filter == nil || filter.Contains(k) {
headers[k] = i
}
//}
}
util.Debug("Headers %v", headers)
return
}
func inferTypes(csv *csv.Reader, fields []string,
numLines int) (map[string]interface{}, error) {
template := make(map[string]interface{})
learners := make([]*typeguessing.Learner, len(fields))
for i := 0; i < len(learners); i++ {
learners[i] = typeguessing.NewLearner()
}
for i := 0; i < numLines; i++ {
line, err := csv.Read()
if err == io.EOF {
break
} else if err != nil {
panic(err)
}
for j, _ := range fields {
learners[j].Feed(line[j])
}
}
for i, f := range fields {
exampleVal := learners[i].BestGuess()
template[f] = exampleVal
}
return template, nil
}
func ReadToMap(r *csv.Reader, headers_raw []string, pkIdx int, kinds KindSlice, vrw types.ValueReadWriter) (m types.Map) {
headers := make([]string, 0, len(headers_raw)-1)
for i, h := range headers_raw {
if i != pkIdx {
headers = append(headers, types.EscapeStructField(h))
}
}
var pkKind types.NomsKind
if len(kinds) == 0 {
pkKind = types.StringKind
} else {
pkKind = kinds[pkIdx]
kinds = append(kinds[:pkIdx], kinds[pkIdx+1:]...)
}
t := MakeStructTypeFromHeaders(headers, "", kinds)
kindMap := make(map[string]types.NomsKind, len(headers))
t.Desc.(types.StructDesc).IterFields(func(name string, t *types.Type) {
kindMap[name] = t.Kind()
})
m = types.NewMap()
fields := map[string]types.Value{}
var pk types.Value
for {
row, err := r.Read()
if err == io.EOF {
break
} else if err != nil {
panic(err)
}
fieldIndex := 0
for x, v := range row {
if x == pkIdx {
pk = StringToType(v, pkKind)
} else if fieldIndex < len(headers) {
name := headers[fieldIndex]
fields[name] = StringToType(v, kindMap[name])
fieldIndex++
}
}
m = m.Set(pk, types.NewStructWithType(t, fields))
}
return
}
func QMerge(r *csv.Reader) {
var m = make(map[string][]string)
var list []string
var repeat []string
r.Read()
var err error
var key string
for {
list, err = r.Read()
if err != nil {
if err != io.EOF {
log.Println("读取文件内容失败,错误信息:", err.Error())
}
break
}
if len(list) != 5 {
log.Println("无效数据:", list)
continue
}
key = strings.TrimSpace(list[1] + list[3])
if key != "" {
if _, ok := m[key]; ok {
repeat = append(repeat, key)
if !first {
m[key] = list
}
} else {
m[key] = list
}
}
}
for _, value := range repeat {
if unrepeat {
delete(m, value)
} else {
log.Println(m[value])
}
}
if unrepeat {
for _, value := range m {
log.Println(value)
}
}
}
// Start a New Table Writer with csv.Reader
// This enables customisation such as reader.Comma = ';'
// See http://golang.org/src/pkg/encoding/csv/reader.go?s=3213:3671#L94
func NewCSVReader(writer io.Writer, csvReader *csv.Reader) (*table, error) {
// Read the first row
headers, err := csvReader.Read()
if err != nil {
return &table{}, err
}
t := NewWriter(writer)
t.SetHeader(headers)
for {
record, err := csvReader.Read()
if err == io.EOF {
break
} else if err != nil {
return &table{}, err
}
t.Append(record)
}
return t, nil
}
// readCost attempts to read a single field of a single CSV record and
// parsing it as a float64. Returns io.EOF if no record is found.
func readCost(cr *csv.Reader) (float64, error) {
rec, err := cr.Read()
if err == io.EOF {
// Empty reply: cannot solve the challenges.
return 0, io.EOF
} else if err != nil {
return 0, err
}
if len(rec) != 1 {
return 0, fmt.Errorf("expected one field, got %v", rec)
}
cost, err := strconv.ParseFloat(rec[0], 64)
if err != nil {
return 0, fmt.Errorf("expected number, got %q", rec[0])
}
return cost, nil
}
func (p *Proc) procRecsFromCSVReader(r *csv.Reader) error {
repoCount := len(p.ShortPathes)
relationRaw := make([][]repoRelation, repoCount)
relationNorm := make([][]repoRelation, repoCount)
selfCounts := make([]float64, repoCount)
n := 0
r.Read()
for {
record, err := r.Read()
if err == io.EOF {
break
}
if err != nil {
return fmt.Errorf("failed to read csv record: %v", err)
}
repo1 := p.repoIndexFromURL(record[0])
repo2 := p.repoIndexFromURL(record[1])
count, err := strconv.Atoi(record[2])
if err != nil {
log.Printf("Failed to ParseFloat(%q, 64): %v", record[2], err)
}
relationRaw[repo1] = append(relationRaw[repo1], repoRelation{repo2, float64(count)})
if repo1 == repo2 {
selfCounts[repo1] = float64(count)
}
n++
if math.Mod(float64(n), float64(500000)) == 0 {
log.Printf("Processed %v recs", n)
}
}
for i, rs := range relationRaw {
for _, r := range rs {
normScore := r.score / math.Sqrt(selfCounts[i]) / math.Sqrt(selfCounts[r.i])
relationNorm[i] = append(relationNorm[i], repoRelation{r.i, normScore})
}
}
p.RecsRaw = repoRelationsToRecs(relationRaw, p.TopN)
p.RecsNorm = repoRelationsToRecs(relationNorm, p.TopN)
return nil
}
// Searches the first line for the given names and returns the column indices
func (r *CsvFileReader) getColIndex(reader *csv.Reader, keyColName string, valColName string) (keyColIndex int, valColIndex int, err error) {
line, err := reader.Read()
if err != nil {
return
}
for k, v := range line {
if v == keyColName {
keyColIndex = k
}
if v == valColName {
valColIndex = k
}
}
if keyColIndex >= 0 && valColIndex >= 0 {
return
}
err = fmt.Errorf("Failed to find index for columns '%s' and '%s!", keyColName, valColName)
return
}
/* Given a CSV reader, populate a histogram table of the field counts
*/
func countFields(csvReader *csv.Reader, histogram []int64) {
histogramLen := len(histogram)
csvReader.FieldsPerRecord = -1 // Tell the CVS reader to expect an unknown field count
for {
strs, err := csvReader.Read()
if nil != err {
break
}
f := len(strs)
if f < histogramLen {
if 0 < f {
histogram[f]++
} // There's no such thing as a 0 length field record.
} else {
fmt.Print("\nWARNING:", histogramLen, "<", f, "histogram length.")
}
}
return
}