func (stats *Stats) SaveSnapshot(pop *base.Population, quiet bool, cntKeys, staKeys, intCntKeys []string) (snapName, snapPopName string) {
timeDelay := time.Since(stats.lastTime)
stats.lastTime = time.Now()
// Sort population, to easy reading when printing and drawing
sort.Sort(pop)
// Build paths
prefix := fmt.Sprintf("%v/snapshot/%v-", stats.basedir, stats.basename)
snapName = fmt.Sprintf(prefix+"snapshot-%v.png", stats.snapCount)
snapPopName = fmt.Sprintf(prefix+"pop_snapshot-%v.png", stats.snapCount)
logPrefix := fmt.Sprintf("%v/log/%v-", stats.basedir, stats.basename)
bestTree := fmt.Sprintf(logPrefix+"tree-%v.json", stats.snapCount)
writeIndividual(pop.BestIndividual(), bestTree)
const wideField = 40
if !quiet {
if stats.snapCount == 0 {
fmt.Print("Generation | Tree depth (mean, stdev) | Tree size (mean, stdev) | Fitness (min, mean, max, stdev) | XO Improv (abs, rel) | MUT Improv (abs, rel) | Time delay |")
for _, k := range staKeys {
fmt.Printf(" %21s |", k)
}
for _, k := range cntKeys {
fmt.Printf(" %21s |", k)
}
for _, k := range intCntKeys {
fmt.Printf(" %*s |", wideField, k)
}
fmt.Println()
}
fmt.Printf("%10v | %11.4f %11.4f | %11.4f %11.4f | %10.2f %10.2f %10.2f %10.2f | %10v %10.3f | %10v %10.3f | %13v |",
stats.obsCount-1,
stats.depth.PartialMean(), math.Sqrt(stats.depth.PartialVar()),
stats.size.PartialMean(), math.Sqrt(stats.size.PartialVar()),
stats.min.Get(), stats.fitness.PartialMean(), stats.max.Get(), math.Sqrt(stats.fitness.PartialVar()),
stats.xoImpr.AbsoluteFrequency(), stats.xoImpr.RelativeFrequency(),
stats.mutImpr.AbsoluteFrequency(), stats.mutImpr.RelativeFrequency(),
fmt.Sprintf("%v", timeDelay),
)
for _, k := range staKeys {
if sst, ok := pop.Set.Statistics[k]; ok {
fmt.Printf(" %6d %6g %6g %10.6g %10.6g |", sst.Variance.Count(), sst.Min.Get(), sst.Max.Get(), sst.PartialMean(), sst.PartialVarBessel())
sst.Clear()
} else {
fmt.Printf(" %6v %6v %6v %10v %10v |", "-", "-", "-", "-", "-")
}
}
for _, k := range cntKeys {
if cst, ok := pop.Set.Counters[k]; ok {
fmt.Printf(" %10d %10.6g |", cst.AbsoluteFrequency(), cst.RelativeFrequency())
cst.Clear()
} else {
fmt.Printf(" %10v %10v |", "-", "-")
}
}
for _, k := range intCntKeys {
if nst, ok := pop.Set.IntCounters[k]; ok {
keys := nst.Counted()
if len(keys) == 0 {
fmt.Printf(" %*s |", wideField, "0:0")
} else {
vals := make([]string, len(keys))
for i, n := range keys {
vals[i] = fmt.Sprintf("%d:%d", n, nst.AbsoluteFrequency(n))
}
fmt.Printf(" %*s |", wideField, strings.Join(vals, ","))
nst.Clear()
}
} else {
fmt.Printf(" %*s |", wideField, "0:0")
}
}
fmt.Println()
}
// Increment snapshot count
stats.snapCount++
return
}
func Evolve(calcMaxDepth func(*imgut.Image) int, fun, ter []gp.Primitive, drawfun func(*base.Individual, *imgut.Image)) {
startTime := time.Now()
// Setup options
fs := flag.NewFlagSet(os.Args[0], flag.ExitOnError)
numGen := fs.Int("g", 100, "Number of generations")
popSize := fs.Int("p", 1000, "Size of population")
saveInterval := fs.Int("n", 25, "Generations interval between two snapshot saves")
tournSize := fs.Int("T", 3, "Tournament size")
pCross := fs.Float64("C", 0.8, "Crossover probability")
pMut := fs.Float64("M", 0.1, "Bit mutation probability")
quiet := fs.Bool("q", false, "Quiet mode")
fElite := fs.Bool("el", false, "Enable elite individual")
fInitFull := fs.Bool("full", true, "Enable full initialization")
fInitGrow := fs.Bool("grow", true, "Enable grow initialization")
fInitRamped := fs.Bool("ramp", true, "Enable ramped initialization")
fMutSin := fs.Bool("ms", false, "Enable Single Mutation")
fMutNod := fs.Bool("mn", false, "Enable Node Mutation")
fMutSub := fs.Bool("mt", false, "Enable Subtree Mutation")
fMutAre := fs.Bool("ma", false, "Enable Area Mutation")
fMutLsubt := fs.Bool("mlt", false, "Enable Level-Subtree Mutation")
fMutLoc := fs.Bool("ml", false, "Enable Local Mutation")
fSelect := fs.String("sel", "torun", "Pick selection method (tourn, rmad, irmad)")
fMultiMut := fs.Bool("mM", false, "Enable multiple mutations")
fFitness := fs.String("fit", "rmse", "Pick fitness function (rmse, mse, rmsed, ssim)")
//advStats := fs.Bool("stats", false, "Enable advanced statistics")
//nps := fs.Bool("nps", false, "Disable population snapshot (no-pop-snap)")
targetPath := fs.String("t", "", "Target image (PNG) path")
var basedir, basename string
cpuProfile := fs.String("cpuprofile", "", "Write CPU profile to file")
fs.Usage = func() {
fmt.Fprintf(os.Stderr, "Usage of %s:\n", os.Args[0])
fs.PrintDefaults()
fmt.Fprintf(os.Stderr, " basedir (string) to be used for saving logs and files\n")
fmt.Fprintf(os.Stderr, " basename (string) to be used for saving logs and files\n")
}
fs.Parse(os.Args[1:])
// Check if the argument
args := fs.Args()
if len(args) != 2 {
fs.Usage()
fmt.Fprintf(os.Stderr, "\nBasename/basedir parameter not specified\n")
return
} else {
basedir = args[0]
basename = args[1]
}
sta := stats.Create(basedir, basename)
// Build settings
var settings base.Settings
// Primitives to use
settings.Functionals = fun
settings.Terminals = ter
// Draw function to use
settings.Draw = drawfun
settings.Ramped = *fInitRamped
if settings.Ramped {
fmt.Println("Using ramped initialization")
}
// Pick initialization method based on flags
var genFuncBit func(minH, maxH int, funcs, terms []gp.Primitive) *node.Node
if *fInitFull && !*fInitGrow {
fmt.Println("Using init strategy: full")
genFuncBit = node.MakeTreeFull // Initialize tree using full
} else if !*fInitFull && *fInitGrow {
fmt.Println("Using init strategy: balanced grow")
genFuncBit = node.MakeTreeGrowBalanced // Initialize using grow
} else {
fmt.Println("Using init strategy: half-and-half")
genFuncBit = node.MakeTreeHalfAndHalf // Initialize using both (half and half)
}
settings.GenFunc = func(maxDep int) *node.Node {
t := genFuncBit(0, maxDep, fun, ter) // /* TODO */ sistemare la minH
s := settings
if _, ok := s.IntCounters[tree_init_depth]; !ok {
s.IntCounters[tree_init_depth] = new(counter.IntCounter)
}
s.IntCounters[tree_init_depth].Count(node.Depth(t))
return t
}
// Build statistic map
settings.Statistics = make(map[string]*sequence.SequenceStats)
settings.Counters = make(map[string]*counter.BoolCounter)
settings.IntCounters = make(map[string]*counter.IntCounter)
// Names of extra statistics
statsKeys := []string{}
countersKeys := []string{}
intCountersKeys := []string{}
intCountersKeys = append(intCountersKeys, tree_init_depth)
if *fMutSin {
countersKeys = append(countersKeys, mut_single_event, mut_single_improv, mut_single_node_leaves)
intCountersKeys = append(intCountersKeys, mut_single_node_depth, mut_single_node_repld)
}
if *fMutNod {
countersKeys = append(countersKeys, mut_multi_event, mut_multi_improv, mut_multi_node_leaves)
intCountersKeys = append(intCountersKeys, mut_multi_node_depth, mut_multi_node_repld)
}
if *fMutSub {
countersKeys = append(countersKeys, mut_tree_event, mut_tree_improv, mut_tree_node_leaves)
intCountersKeys = append(intCountersKeys, mut_tree_node_depth, mut_tree_node_repld)
}
if *fMutAre {
countersKeys = append(countersKeys, mut_area_event, mut_area_improv, mut_area_node_leaves)
intCountersKeys = append(intCountersKeys, mut_area_node_depth, mut_area_node_repld)
}
if *fMutLsubt {
countersKeys = append(countersKeys, mut_lsubt_event, mut_lsubt_improv, mut_lsubt_improv)
intCountersKeys = append(intCountersKeys, mut_lsubt_node_depth, mut_lsubt_node_repld)
}
if *fMutLoc {
countersKeys = append(countersKeys, mut_local_event, mut_local_improv)
// intCountersKeys = append(intCountersKeys, "mut_local_") TODO
}
if *fMultiMut {
intCountersKeys = append(intCountersKeys, mut_count_multi)
}
if *cpuProfile != "" {
f, err := os.Create(*cpuProfile)
if err != nil {
fmt.Println("ERROR", err)
panic("Cannot create cpuprofile")
}
pprof.StartCPUProfile(f)
defer pprof.StopCPUProfile()
}
// Load the target
var err error
settings.ImgTarget, err = imgut.Load(*targetPath)
if err != nil {
fmt.Fprintln(os.Stderr, "ERROR: Cannot load image", *targetPath)
panic("Cannot load image")
}
if !*quiet {
fmt.Println("Image format RGB?", settings.ImgTarget.ColorSpace == imgut.MODE_RGB, settings.ImgTarget.ColorSpace)
}
// Compute the right value of maxDepth
settings.MaxDepth = calcMaxDepth(settings.ImgTarget)
if !*quiet {
fmt.Println("For area of", settings.ImgTarget.W*settings.ImgTarget.H, "pixels, max depth is", settings.MaxDepth)
}
// Create temporary surface, of same size and mode
//settings.ImgTemp = imgut.Create(settings.ImgTarget.W, settings.ImgTarget.H, settings.ImgTarget.ColorSpace)
// Create temporary surface for the entire population
pImgCols := int(math.Ceil(math.Sqrt(float64(*popSize))))
pImgRows := int(math.Ceil(float64(*popSize) / float64(pImgCols)))
imgTempPop := imgut.Create(pImgCols*settings.ImgTarget.W, pImgRows*settings.ImgTarget.H, settings.ImgTarget.ColorSpace)
// Define the operators
settings.CrossOver = makeCrossover(&settings)
settings.Mutate = makeMultiMutation(&settings, *fMultiMut, *fMutSin, *fMutNod, *fMutSub, *fMutAre, *fMutLsubt, *fMutLoc)
// Fitness
if *fFitness == "mse" {
settings.FitFunc = base.MakeFitMSE(settings.ImgTarget)
} else if *fFitness == "rmsed" {
statsKeys = append(statsKeys, "fit-delta-rmse")
settings.FitFunc = base.MakeFitEdge(settings.ImgTarget, settings.Statistics)
} else if *fFitness == "ssim" {
settings.FitFunc = base.MakeFitSSIM(settings.ImgTarget)
} else {
statsKeys = append(statsKeys, "fit-delta-rmse")
settings.FitFunc = base.MakeFitRMSE(settings.ImgTarget)
}
// Selection
ts := *tournSize
if *fSelect == "rmad" {
settings.Select = base.MakeSelectRMAD(ts, ts*ts, settings.BetterThan)
} else if *fSelect == "irmad" {
settings.Select = base.MakeSelectIRMAD(ts, ts*ts, settings.BetterThan)
} else {
settings.Select = base.MakeSelectTourn(ts, settings.BetterThan)
}
// Seed rng
if !*quiet {
fmt.Println("Number of CPUs", runtime.NumCPU())
runtime.GOMAXPROCS(runtime.NumCPU())
fmt.Println("CPUs limits", runtime.GOMAXPROCS(0))
}
// Build population
pop := new(base.Population)
pop.Set = &settings
//pop.TournSize = *tournSize
pop.Initialize(*popSize)
// Save initial population FIXME it's for debugging
/*
for i := range pop.Pop {
pop.Pop[i].Draw(imgTemp)
imgTemp.WritePNG(fmt.Sprintf("pop_ind_%v.png", i))
}
*/
// Number of parallel generators to setup
pipelineSize := 1 // Was 4 FIXME but there are statistics used in parallel and not ready for concurrent access
// Containers for pipelined operators
chXo := make([]<-chan ga.PipelineIndividual, pipelineSize)
chMut := make([]<-chan ga.PipelineIndividual, pipelineSize)
// Save best individual, for elitism
var elite ga.Individual = nil
// Save time before starting
//genTime := time.Now()
// Loop until max number of generation is reached
for g := 0; g < *numGen; g++ {
// Compute fitness for every individual with no fitness
fitnessEval := pop.Evaluate()
fitnessEval = fitnessEval
//
//if !*quiet {
// fmt.Println("Generation ", g, "fit evals", fitnessEval, time.Since(genTime))
// genTime = time.Now()
//}
// Compute various statistics
sta.Observe(pop)
// Statistics and samples
if g%*saveInterval == 0 {
snapName, snapPopName := sta.SaveSnapshot(pop, *quiet, countersKeys, statsKeys, intCountersKeys)
// Save best individual
if false {
pop.BestIndividual().Fitness()
pop.BestIndividual().(*base.Individual).ImgTemp.WritePNG(snapName)
}
// Save best individual code
// pop.BestIndividual().(*base.Individual).Draw(settings.ImgTemp)
// settings.ImgTemp.WritePNG(snapName)
// Save pop images
pop.Draw(imgTempPop, pImgCols, pImgRows)
imgTempPop.WritePNG(snapPopName)
}
// Setup parallel pipeline
selectionSize := len(pop.Pop) // int(float64(len(pop.Pop))*0.3)) if you want to randomly generate new individuals
chSel := ga.GenSelect(pop, selectionSize, float32(g)/float32(*numGen), elite)
for i := 0; i < pipelineSize; i++ {
chXo[i] = ga.GenCrossover(chSel, *pCross)
chMut[i] = ga.GenMutate(chXo[i], *pMut)
}
var sel []ga.PipelineIndividual = ga.Collector(ga.FanIn(chMut...), selectionSize)
// Replace old population and compute statistics
for i := range sel {
pop.Pop[i] = sel[i].Ind.(*base.Individual)
sta.ObserveCrossoverFitness(sel[i].CrossoverFitness, sel[i].InitialFitness)
sta.ObserveMutationFitness(sel[i].MutationFitness, sel[i].CrossoverFitness)
}
// When elitism is activated, get best individual
if *fElite {
elite = pop.BestIndividual()
}
// Build new individuals
//base.RampedFill(pop, len(sel), len(pop.Pop))
}
fitnessEval := pop.Evaluate()
fitnessEval = fitnessEval
// Population statistics
sta.Observe(pop)
//if !*quiet {
// fmt.Println("Generation", *numGen, "fit evals", fitnessEval)
// fmt.Println("Best individual", pop.BestIndividual())
//}
snapName, snapPopName := sta.SaveSnapshot(pop, *quiet, countersKeys, statsKeys, intCountersKeys)
// Save best individual
if false {
pop.BestIndividual().Fitness()
pop.BestIndividual().(*base.Individual).ImgTemp.WritePNG(snapName)
}
// pop.BestIndividual().(*base.Individual).Draw(settings.ImgTemp)
// settings.ImgTemp.WritePNG(snapName)
// Save pop images
pop.Draw(imgTempPop, pImgCols, pImgRows)
imgTempPop.WritePNG(snapPopName)
if !*quiet {
fmt.Println("Best individual:")
fmt.Println(pop.BestIndividual())
}
elapsedTime := time.Since(startTime)
fmt.Println("Execution took %s", elapsedTime)
/*
bestName := fmt.Sprintf("%v/best/%v.png", basedir, basename)
if !*quiet {
fmt.Println("Saving best individual in", bestName)
fmt.Println(pop.BestIndividual())
}
pop.BestIndividual().(*base.Individual).Draw(settings.ImgTemp)
settings.ImgTemp.WritePNG(bestName)
*/
}
