Example #1
0
func runRefTest(A *matrix.FloatMatrix, ntest, LB int) time.Duration {

	var mintime time.Duration

	N := A.Rows()
	ipiv := make([]int32, N, N)
	lopt := linalg.OptLower
	if testUpper {
		lopt = linalg.OptUpper
	}

	fnc := func() {
		ERRlapack = lapack.Sytrf(A, ipiv, lopt)
	}

	A0 := A.Copy()
	for n := 0; n < ntest; n++ {
		if n > 0 {
			// restore original A
			A0.CopyTo(A)
		}
		mperf.FlushCache()
		time0 := mperf.Timeit(fnc)
		if n == 0 || time0 < mintime {
			mintime = time0
		}
	}
	return mintime
}
Example #2
0
// single invocation for matops and lapack functions
func runCheck(A *matrix.FloatMatrix, LB int) (bool, time.Duration, time.Duration) {

	var flags matops.Flags
	N := A.Rows()
	ipiv := make([]int, N, N)
	ipiv0 := make([]int32, N, N)
	flags = matops.LOWER
	lopt := linalg.OptLower
	if testUpper {
		flags = matops.UPPER
		lopt = linalg.OptUpper
	}
	W := matrix.FloatZeros(A.Rows(), LB+2)
	fnc := func() {
		_, ERRmatops = matops.DecomposeBK(A, W, ipiv, flags, LB)
	}

	if verbose && N < 10 {
		fmt.Fprintf(os.Stderr, "A start:\n%v\n", A)
	}
	A0 := A.Copy()
	mperf.FlushCache()
	time0 := mperf.Timeit(fnc)
	if verbose && N < 10 {
		fmt.Fprintf(os.Stderr, "ipiv:%v\n", ipiv)
		fmt.Fprintf(os.Stderr, "A end:\n%v\n", A)
	}

	fn2 := func() {
		ERRlapack = lapack.Sytrf(A0, ipiv0, lopt)
	}
	if verbose && N < 10 {
		fmt.Fprintf(os.Stderr, "A0 start:\n%v\n", A0)
	}
	mperf.FlushCache()
	time2 := mperf.Timeit(fn2)
	if verbose && N < 10 {
		fmt.Fprintf(os.Stderr, "ipiv0:%v\n", ipiv0)
		fmt.Fprintf(os.Stderr, "A0 end:\n%v\n", A0)
	}
	// now A == A0 && ipiv == ipiv0

	ok := A.AllClose(A0)
	okip := checkIPIV(ipiv, ipiv0)
	if !ok || !okip {
		// save result to globals
		Rlapack = A0
		Rmatops = A
		IPIVlapack = ipiv0
		IPIVmatops = ipiv
	}
	return ok && okip, time0, time2
}
Example #3
0
func _TestBKpivot1n2(t *testing.T) {
	Ldata := [][]float64{
		[]float64{1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0},
		[]float64{1.0, 2.0, 0.0, 0.0, 0.0, 0.0, 0.0},
		[]float64{1.0, 2.0, 3.0, 0.0, 0.0, 0.0, 0.0},
		[]float64{1.0, 2.0, 3.0, 4.0, 0.0, 0.0, 0.0},
		[]float64{1.0, 5.0, 3.0, 4.0, 5.0, 0.0, 0.0},
		[]float64{1.0, 2.0, 3.0, 7.0, 5.0, 6.0, 0.0},
		[]float64{1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0}}
	Bdata := [][]float64{
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0}}

	A := matrix.FloatMatrixFromTable(Ldata, matrix.RowOrder)
	X := matrix.FloatMatrixFromTable(Bdata, matrix.RowOrder)
	N := A.Rows()
	B := matrix.FloatZeros(N, 2)
	MultSym(B, A, X, 1.0, 0.0, LOWER|LEFT)
	t.Logf("initial B:\n%v\n", B)
	//N := 8
	//A := matrix.FloatUniformSymmetric(N)
	nb := 0

	W := matrix.FloatWithValue(A.Rows(), 5, 0.0)

	ipiv := make([]int, N, N)
	L, _ := DecomposeBK(A.Copy(), W, ipiv, LOWER, nb)
	t.Logf("ipiv: %v\n", ipiv)
	t.Logf("L:\n%v\n", L)

	ipiv0 := make([]int, N, N)
	nb = 4
	L0, _ := DecomposeBK(A.Copy(), W, ipiv0, LOWER, nb)
	t.Logf("ipiv0: %v\n", ipiv0)
	t.Logf("L0:\n%v\n", L0)
	B0 := B.Copy()
	SolveBK(B0, L0, ipiv0, LOWER)
	t.Logf("B0:\n%v\n", B0)

	ipiv2 := make([]int32, N, N)
	lapack.Sytrf(A, ipiv2, linalg.OptLower)
	t.Logf("ipiv2: %v\n", ipiv2)
	t.Logf("lapack A:\n%v\n", A)
	lapack.Sytrs(A, B, ipiv2, linalg.OptLower)
	t.Logf("lapack B:\n%v\n", B)
	t.Logf("B == B0: %v\n", B.AllClose(B0))
}
Example #4
0
func _TestBK2U(t *testing.T) {
	Bdata := [][]float64{
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0},
		[]float64{10.0, 20.0}}

	N := 7

	A0 := matrix.FloatNormal(N, N)
	A := matrix.FloatZeros(N, N)
	// A is symmetric, posivite definite
	Mult(A, A0, A0, 1.0, 1.0, TRANSB)

	X := matrix.FloatMatrixFromTable(Bdata, matrix.RowOrder)
	B := matrix.FloatZeros(N, 2)
	MultSym(B, A, X, 1.0, 0.0, LOWER|LEFT)
	t.Logf("initial B:\n%v\n", B)

	nb := 0
	W := matrix.FloatWithValue(A.Rows(), 5, 1.0)
	A.SetAt(4, 1, A.GetAt(4, 1)+1.0)
	A.SetAt(1, 4, A.GetAt(4, 1))

	ipiv := make([]int, N, N)
	L, _ := DecomposeBK(A.Copy(), W, ipiv, LOWER, nb)
	t.Logf("ipiv: %v\n", ipiv)
	t.Logf("L:\n%v\n", L)

	ipiv0 := make([]int, N, N)
	nb = 4
	L0, _ := DecomposeBK(A.Copy(), W, ipiv0, LOWER, nb)
	t.Logf("ipiv: %v\n", ipiv0)
	t.Logf("L:\n%v\n", L0)
	B0 := B.Copy()
	SolveBK(B0, L0, ipiv0, LOWER)
	t.Logf("B0:\n%v\n", B0)

	ipiv2 := make([]int32, N, N)
	lapack.Sytrf(A, ipiv2, linalg.OptLower)
	t.Logf("ipiv2: %v\n", ipiv2)
	t.Logf("lapack A:\n%v\n", A)
	lapack.Sytrs(A, B, ipiv2, linalg.OptLower)
	t.Logf("lapack B:\n%v\n", B)
	t.Logf("B == B0: %v\n", B.AllClose(B0))
}
Example #5
0
func _TestBKSolve(t *testing.T) {
	Ldata := [][]float64{
		[]float64{1.0, 2.0, 3.0, 4.0},
		[]float64{2.0, 2.0, 3.0, 4.0},
		[]float64{3.0, 3.0, 3.0, 4.0},
		[]float64{4.0, 4.0, 4.0, 4.0}}
	Xdata := [][]float64{
		[]float64{1.0, 2.0},
		[]float64{1.0, 2.0},
		[]float64{1.0, 2.0},
		[]float64{1.0, 2.0}}

	A := matrix.FloatMatrixFromTable(Ldata, matrix.RowOrder)
	X := matrix.FloatMatrixFromTable(Xdata, matrix.RowOrder)
	N := A.Rows()
	B := matrix.FloatZeros(N, 2)
	Mult(B, A, X, 1.0, 0.0, NOTRANS)
	S := matrix.FloatZeros(N, 2)
	MultSym(S, A, X, 1.0, 0.0, LOWER|LEFT)
	t.Logf("B:\n%v\n", B)
	t.Logf("S:\n%v\n", S)
	//N := 8
	//A := matrix.FloatUniformSymmetric(N)
	nb := 0

	W := matrix.FloatWithValue(A.Rows(), 5, 0.0)

	ipiv := make([]int, N, N)
	L, _ := DecomposeBK(A.Copy(), W, ipiv, LOWER, nb)
	t.Logf("ipiv: %v\n", ipiv)
	t.Logf("L:\n%v\n", L)
	B0 := B.Copy()
	SolveBK(B0, L, ipiv, LOWER)
	t.Logf("B0:\n%v\n", B0)

	ipiv2 := make([]int32, N, N)
	lapack.Sytrf(A, ipiv2, linalg.OptLower)
	t.Logf("ipiv2: %v\n", ipiv2)
	t.Logf("lapack A:\n%v\n", A)
	lapack.Sytrs(A, B, ipiv2, linalg.OptLower)
	t.Logf("lapack B:\n%v\n", B)
}