func getChecks() []Check {
var checks []Check
if err := viper.UnmarshalKey("checks", &checks); err != nil {
return nil
}
return checks
}
func main() {
log.Debug("start ")
log.Info(viper.GetString("url"))
log.Info(viper.GetString("author.name"))
var u User
err := viper.UnmarshalKey("author", &u)
if err != nil {
log.Error(err)
return
}
log.Info(u)
closeAll := make(chan int)
go func() {
for {
select {
case <-time.Tick(time.Second):
log.Info("one second gone...")
case <-closeAll:
log.Debug("over")
return
}
}
}()
util.WaitForExit(true, closeAll)
}
func getDockerHostConfig() *docker.HostConfig {
if hostConfig != nil {
return hostConfig
}
dockerKey := func(key string) string {
return "vm.docker.hostConfig." + key
}
getInt64 := func(key string) int64 {
defer func() {
if err := recover(); err != nil {
dockerLogger.Warningf("load vm.docker.hostConfig.%s failed, error: %v", key, err)
}
}()
n := viper.GetInt(dockerKey(key))
return int64(n)
}
var logConfig docker.LogConfig
err := viper.UnmarshalKey(dockerKey("LogConfig"), &logConfig)
if err != nil {
dockerLogger.Warningf("load docker HostConfig.LogConfig failed, error: %s", err.Error())
}
networkMode := viper.GetString(dockerKey("NetworkMode"))
if networkMode == "" {
networkMode = "host"
}
dockerLogger.Debugf("docker container hostconfig NetworkMode: %s", networkMode)
hostConfig = &docker.HostConfig{
CapAdd: viper.GetStringSlice(dockerKey("CapAdd")),
CapDrop: viper.GetStringSlice(dockerKey("CapDrop")),
DNS: viper.GetStringSlice(dockerKey("Dns")),
DNSSearch: viper.GetStringSlice(dockerKey("DnsSearch")),
ExtraHosts: viper.GetStringSlice(dockerKey("ExtraHosts")),
NetworkMode: networkMode,
IpcMode: viper.GetString(dockerKey("IpcMode")),
PidMode: viper.GetString(dockerKey("PidMode")),
UTSMode: viper.GetString(dockerKey("UTSMode")),
LogConfig: logConfig,
ReadonlyRootfs: viper.GetBool(dockerKey("ReadonlyRootfs")),
SecurityOpt: viper.GetStringSlice(dockerKey("SecurityOpt")),
CgroupParent: viper.GetString(dockerKey("CgroupParent")),
Memory: getInt64("Memory"),
MemorySwap: getInt64("MemorySwap"),
MemorySwappiness: getInt64("MemorySwappiness"),
OOMKillDisable: viper.GetBool(dockerKey("OomKillDisable")),
CPUShares: getInt64("CpuShares"),
CPUSet: viper.GetString(dockerKey("Cpuset")),
CPUSetCPUs: viper.GetString(dockerKey("CpusetCPUs")),
CPUSetMEMs: viper.GetString(dockerKey("CpusetMEMs")),
CPUQuota: getInt64("CpuQuota"),
CPUPeriod: getInt64("CpuPeriod"),
BlkioWeight: getInt64("BlkioWeight"),
}
return hostConfig
}
func main() {
// Run Staging Commands
mainCmd.AddCommand(stagingCmd)
// Run Cleanup Command
mainCmd.AddCommand(cleanupCmd)
// Perform REDCap Staging
stagingCmd.AddCommand(redcapStagingCmd)
// Perform Nautilus Staging
stagingCmd.AddCommand(nautilusStagingCmd)
// Perform eHB Staging
stagingCmd.AddCommand(ehbStagingCmd)
// Perform Transform of staging data
mainCmd.AddCommand(transformCmd)
// Stage and transform the data.
mainCmd.AddCommand(etlCmd)
viper.SetEnvPrefix("brp_demo")
viper.AutomaticEnv()
viper.SetConfigName("config")
// Directory the program is being called from
dir, err := filepath.Abs(filepath.Dir(os.Args[0]))
if err == nil {
viper.AddConfigPath(dir)
}
viper.ReadInConfig()
err = viper.UnmarshalKey("targets", &targets)
if err != nil {
log.Println(err)
}
err = viper.UnmarshalKey("sources", &sources)
if err != nil {
log.Println(err)
}
mainCmd.Execute()
}
func TestHostConfig(t *testing.T) {
config.SetupTestConfig("./../../../peer")
var hostConfig = new(docker.HostConfig)
err := viper.UnmarshalKey("vm.docker.hostConfig", hostConfig)
if err != nil {
t.Fatalf("Load docker HostConfig wrong, error: %s", err.Error())
}
testutil.AssertNotEquals(t, hostConfig.LogConfig, nil)
testutil.AssertEquals(t, hostConfig.LogConfig.Type, "json-file")
testutil.AssertEquals(t, hostConfig.LogConfig.Config["max-size"], "50m")
testutil.AssertEquals(t, hostConfig.LogConfig.Config["max-file"], "5")
}
func runTarball(binariesLocation string) {
defer shell.ErrExit()
shell.Tee = os.Stdout
if viper.GetBool("verbose") {
shell.Trace = true
}
info := NewProjectInfo()
var (
prefix = viper.GetString("tarball.prefix")
tmpDir = ".release"
goos = envOr("GOOS", goos)
goarch = envOr("GOARCH", goarch)
name = fmt.Sprintf("%s-%s.%s-%s", info.Name, info.Version, goos, goarch)
binaries []Binary
ext string
)
if goos == "windows" {
ext = ".exe"
}
dir := filepath.Join(tmpDir, name)
if err := os.MkdirAll(dir, 0777); err != nil {
fatalMsg(err, "Failed to create directory")
}
defer sh("rm -rf", tmpDir)
projectFiles := viper.GetStringSlice("tarball.files")
for _, file := range projectFiles {
sh("cp -a", file, dir)
}
err := viper.UnmarshalKey("build.binaries", &binaries)
fatalMsg(err, "Failed to Unmashal binaries :")
for _, binary := range binaries {
binaryName := fmt.Sprintf("%s%s", binary.Name, ext)
sh("cp -a", shell.Path(binariesLocation, binaryName), dir)
}
if !fileExists(prefix) {
os.Mkdir(prefix, 0777)
}
tar := fmt.Sprintf("%s.tar.gz", name)
fmt.Println(" > ", tar)
sh("tar zcf", shell.Path(prefix, tar), "-C", tmpDir, name)
}
func init() {
err := viper.UnmarshalKey("vm.docker.hostConfig", hostConfig)
if err != nil {
dockerLogger.Fatalf("Load docker HostConfig wrong, error: %s", err.Error())
}
if hostConfig.NetworkMode == "" {
hostConfig.NetworkMode = "host"
}
// not support customize
hostConfig.Privileged = false
dockerLogger.Debugf("Load docker HostConfig: %+v", hostConfig)
}
// GetUser implements auth.Authable interface.
func (authenticaton *FileAuthentication) GetUser(header *http.Header) User {
var user FileUser
token := header.Get("Token")
if token == "" {
return nil
}
viper.UnmarshalKey(fmt.Sprintf("%s.%s", TokensConfigPath, token), &user)
if user == NilFileUser {
return nil
}
return user
}
func runBuild() {
defer shell.ErrExit()
shell.Tee = os.Stdout
if viper.GetBool("verbose") {
shell.Trace = true
}
info := NewProjectInfo()
var (
prefix = viper.GetString("build.prefix")
repoPath = viper.GetString("repository.path")
flags = viper.GetString("build.flags")
ext string
binaries []Binary
ldflags string
)
if goos == "windows" {
ext = ".exe"
}
ldflags = getLdflags(info)
ldflag := fmt.Sprintf("-ldflags \"%s\"", ldflags)
os.Setenv("GO15VENDOREXPERIMENT", "1")
err := viper.UnmarshalKey("build.binaries", &binaries)
fatalMsg(err, "Failed to Unmashal binaries :")
for _, binary := range binaries {
binaryName := fmt.Sprintf("%s%s", binary.Name, ext)
fmt.Printf(" > %s\n", binaryName)
sh("go build", flags, ldflag, "-o", shell.Path(prefix, binaryName), shell.Path(repoPath, binary.Path))
}
}
func FillServiceConfigFromFile(config *proxy.ServiceConfig, filename string) error {
viper.SetConfigName(filename)
viper.AddConfigPath(".") // look in the working dir
err := viper.ReadInConfig()
if err != nil {
return fmt.Errorf("Error when loading config: %s", err)
}
//log.Println(viper.Get("Routes"))
_brokers := []proxy.BrokerConfig{}
err = viper.UnmarshalKey("Brokers", &_brokers)
if err != nil {
return fmt.Errorf("Error when parsing Brokers: %v", err)
}
brokers := map[string]proxy.BrokerConfig{}
for _, broker := range _brokers {
brokers[broker.Id] = broker
}
log.Println("")
config.Brokers = brokers
_workers := []FcgiWorkerConfig{}
err = viper.UnmarshalKey("Workers", &_workers)
if err != nil {
return fmt.Errorf("Error when parsing Workers: %v", err)
}
workers := map[string]proxy.WorkerConfig{}
for _, worker := range _workers {
workers[worker.GetId()] = &worker
}
config.Workers = workers
err = viper.UnmarshalKey("Routes", &config.Routes)
if err != nil {
return fmt.Errorf("Error when parsing Routes: %v", err)
}
for _, route := range config.Routes {
_, hasBroker := brokers[route.Broker]
_, hasWorker := workers[route.Worker]
if !hasWorker || !hasBroker {
return fmt.Errorf("Config for route %s is not valid", route.Name)
}
}
return nil
}
Run: func(cmd *cobra.Command, args []string) {
if len(args) == 0 {
log.Fatal("Error: You must provide a target")
}
staging.Add(1)
redcapStaging(args)
}}
var redcapStaging = func(args []string) {
defer staging.Done()
var Rc REDCapConfig
err := viper.UnmarshalKey("REDCap", &Rc)
if err != nil {
log.Println("unable to decode: %s", err)
}
target := targets[args[0]]
db, err := sql.Open("postgres", fmt.Sprintf("host=%s user=%s dbname=%s sslmode=disable",
target.Host,
target.User,
target.Db))
if err != nil {
log.Fatal(err)
}
url := fmt.Sprintf("%sprotocoldatasources/%d/subjects/", Bc.Url, d.Id)
r := brpAPIRequest(url)
err := json.Unmarshal(r, &as)
if err != nil {
log.Fatal(err)
}
c <- as.Subjects
}
var generateLinkTable = func(args []string) {
defer staging.Done()
target_config := targets[args[0]]
err := viper.UnmarshalKey("BRP", &Bc)
if err != nil {
log.Fatal(err)
}
db, err := sql.Open("postgres", fmt.Sprintf("host=%s user=%s dbname=%s sslmode=disable",
target_config.Host,
target_config.User,
target_config.Db))
if err != nil {
log.Fatal(err)
}
defer db.Close()
