// Make sure new labelgraph data have different IDs.
func TestNewLabelgraphDifferent(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
// Add data
config := dvid.NewConfig()
dataservice1, err := datastore.NewData(uuid, dtype, "lg1", config)
if err != nil {
t.Errorf("Error creating new labelgraph instance 1: %v\n", err)
}
data1, ok := dataservice1.(*Data)
if !ok {
t.Errorf("Returned new data instance 1 is not labelgraph.Data\n")
}
dataservice2, err := datastore.NewData(uuid, dtype, "lg2", config)
if err != nil {
t.Errorf("Error creating new labelgraph instance 2: %v\n", err)
}
data2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not labelgraph.Data\n")
}
if data1.InstanceID() == data2.InstanceID() {
t.Errorf("Instance IDs should be different: %d == %d\n",
data1.InstanceID(), data2.InstanceID())
}
}
// Make sure new keyvalue data have different IDs.
func TestNewKeyvalueDifferent(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
// Add data
config := dvid.NewConfig()
dataservice1, err := datastore.NewData(uuid, kvtype, "instance1", config)
if err != nil {
t.Errorf("Error creating new keyvalue instance: %v\n", err)
}
kv1, ok := dataservice1.(*Data)
if !ok {
t.Errorf("Returned new data instance 1 is not keyvalue.Data\n")
}
if kv1.DataName() != "instance1" {
t.Errorf("New keyvalue data instance name set incorrectly: %q != %q\n",
kv1.DataName(), "instance1")
}
dataservice2, err := datastore.NewData(uuid, kvtype, "instance2", config)
if err != nil {
t.Errorf("Error creating new keyvalue instance: %v\n", err)
}
kv2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not keyvalue.Data\n")
}
if kv1.InstanceID() == kv2.InstanceID() {
t.Errorf("Instance IDs should be different: %d == %d\n",
kv1.InstanceID(), kv2.InstanceID())
}
}
func TestROICreateAndSerialize(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
// Add data
config := dvid.NewConfig()
dataservice1, err := datastore.NewData(uuid, roitype, "myroi", config)
if err != nil {
t.Errorf("Error creating new roi instance: %v\n", err)
}
roi1, ok := dataservice1.(*Data)
if !ok {
t.Errorf("Returned new data instance 1 is not roi.Data\n")
}
if roi1.DataName() != "myroi" {
t.Errorf("New roi data instance name set incorrectly: %q != %q\n",
roi1.DataName(), "myroi")
}
config.Set("BlockSize", "15,16,17")
dataservice2, err := datastore.NewData(uuid, roitype, "myroi2", config)
if err != nil {
t.Errorf("Error creating new roi instance: %v\n", err)
}
roi2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not roi.Data\n")
}
if roi1.InstanceID() == roi2.InstanceID() {
t.Errorf("Instance IDs should be different: %d == %d\n",
roi1.InstanceID(), roi2.InstanceID())
}
// Test persistence of storage.
roi2.MinZ = 13
roi2.MaxZ = 3098
gobBytes, err := roi2.GobEncode()
if err != nil {
t.Fatalf("Could not Gob encode roi: %v\n", err)
}
var received Data
if err = received.GobDecode(gobBytes); err != nil {
t.Fatalf("Could not decode Gob-encoded roi: %v\n", err)
}
if !roi2.Data.Equals(received.Data) {
t.Errorf("ROI base Data has bad roundtrip:\nOriginal:\n%v\nReceived:\n%v\n",
*(roi2.Data), *(received.Data))
}
if !reflect.DeepEqual(roi2.Properties, received.Properties) {
t.Errorf("ROI extended properties has bad roundtrip:\nOriginal:\n%v\nReceived:\n%v\n",
roi2.Properties, received.Properties)
}
}
func repoNewDataHandler(c web.C, w http.ResponseWriter, r *http.Request) {
uuid := c.Env["uuid"].(dvid.UUID)
config := dvid.NewConfig()
if err := config.SetByJSON(r.Body); err != nil {
BadRequest(w, r, fmt.Sprintf("Error decoding POSTed JSON config for 'new': %v", err))
return
}
// Make sure that the passed configuration has data type and instance name.
typename, found, err := config.GetString("typename")
if !found || err != nil {
BadRequest(w, r, "POST on repo endpoint requires specification of valid 'typename'")
return
}
dataname, found, err := config.GetString("dataname")
if !found || err != nil {
BadRequest(w, r, "POST on repo endpoint requires specification of valid 'dataname'")
return
}
typeservice, err := datastore.TypeServiceByName(dvid.TypeString(typename))
if err != nil {
BadRequest(w, r, err)
return
}
_, err = datastore.NewData(uuid, typeservice, dvid.InstanceName(dataname), config)
if err != nil {
BadRequest(w, r, err)
return
}
w.Header().Set("Content-Type", "application/json")
fmt.Fprintf(w, "{%q: 'Added %s [%s] to node %s'}", "result", dataname, typename, uuid)
}
func TestRequests(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, syntype, "mysynapses", config)
if err != nil {
t.Fatalf("Error creating new data instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Fatalf("Returned new data instance is not synapse.Data\n")
}
// PUT first batch of synapses
testJSON, err := json.Marshal(testData)
if err != nil {
t.Fatal(err)
}
url1 := fmt.Sprintf("%snode/%s/%s/elements", server.WebAPIPath, uuid, data.DataName())
server.TestHTTP(t, "POST", url1, strings.NewReader(string(testJSON)))
// GET synapses back within superset bounding box and make sure all data is there.
testResponse(t, testData, "%snode/%s/%s/elements/1000_1000_1000/0_0_0", server.WebAPIPath, uuid, data.DataName())
// Test subset GET
testResponse(t, expected3, "%snode/%s/%s/elements/5_5_5/126_60_97", server.WebAPIPath, uuid, data.DataName())
// Test Tag 1
tag := Tag("Synapse2")
synapse2 := getTag(tag, testData)
testResponse(t, synapse2, "%snode/%s/%s/tag/%s?relationships=true", server.WebAPIPath, uuid, data.DataName(), tag)
// Test Tag 2
tag2 := Tag("Zlt90")
zlt90 := getTag(tag2, testData)
testResponse(t, zlt90, "%snode/%s/%s/tag/%s?relationships=true", server.WebAPIPath, uuid, data.DataName(), tag2)
// Test move
url5 := fmt.Sprintf("%snode/%s/%s/move/127_63_99/127_64_100", server.WebAPIPath, uuid, data.DataName())
server.TestHTTP(t, "POST", url5, nil)
testResponse(t, afterMove, "%snode/%s/%s/elements/1000_1000_1000/0_0_0", server.WebAPIPath, uuid, data.DataName())
// --- check tag
synapse2 = getTag(tag, afterMove)
testResponse(t, synapse2, "%snode/%s/%s/tag/%s?relationships=true", server.WebAPIPath, uuid, data.DataName(), tag)
// Test delete
url6 := fmt.Sprintf("%snode/%s/%s/element/127_64_100", server.WebAPIPath, uuid, data.DataName())
server.TestHTTP(t, "DELETE", url6, nil)
testResponse(t, afterDelete, "%snode/%s/%s/elements/1000_1000_1000/0_0_0", server.WebAPIPath, uuid, data.DataName())
// --- check tag
synapse2 = getTag(tag, afterDelete)
testResponse(t, synapse2, "%snode/%s/%s/tag/%s?relationships=true", server.WebAPIPath, uuid, data.DataName(), tag)
}
// Creates a new data instance for labelblk
func newDataInstance(uuid dvid.UUID, t *testing.T, name dvid.InstanceName) *Data {
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, labelsT, name, config)
if err != nil {
t.Errorf("Unable to create labelblk instance %q: %v\n", name, err)
}
labels, ok := dataservice.(*Data)
if !ok {
t.Errorf("Can't cast labels data service into Data\n")
}
return labels
}
func makeGrayscale(uuid dvid.UUID, t *testing.T, name dvid.InstanceName) *imageblk.Data {
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, grayscaleT, name, config)
if err != nil {
t.Errorf("Unable to create grayscale instance %q: %v\n", name, err)
}
grayscale, ok := dataservice.(*imageblk.Data)
if !ok {
t.Errorf("Can't cast data service into imageblk Data\n")
}
return grayscale
}
func TestBasic(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
config := dvid.NewConfig()
_, err := datastore.NewData(uuid, dtype, "instance1", config)
if err != nil {
t.Errorf("Error creating new multichan16 instance: %v\n", err)
}
}
func TestROIPartition(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create the ROI dataservice.
uuid, versionID := initTestRepo()
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, roitype, "roi", config)
if err != nil {
t.Errorf("Error creating new roi instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Errorf("Returned new data instance is not roi.Data\n")
}
// PUT an ROI
roiRequest := fmt.Sprintf("%snode/%s/%s/roi", server.WebAPIPath, uuid, data.DataName())
req, err := http.NewRequest("POST", roiRequest, getSpansJSON(testSpans))
if err != nil {
t.Errorf("Unsuccessful POST request (%s): %v\n", roiRequest, err)
}
ctx := datastore.NewVersionedCtx(data, versionID)
w := httptest.NewRecorder()
data.ServeHTTP(uuid, ctx, w, req)
if w.Code != http.StatusOK {
t.Errorf("Bad server response roi POST, status %s, for roi %q\n", w.Code, data.DataName())
}
// Request the standard subvolume partitioning
partitionReq := fmt.Sprintf("%snode/%s/%s/partition?batchsize=5&optimized=true", server.WebAPIPath, uuid,
data.DataName())
req, err = http.NewRequest("GET", partitionReq, nil)
if err != nil {
t.Errorf("Unsuccessful GET request (%s): %v\n", partitionReq, err)
}
w = httptest.NewRecorder()
data.ServeHTTP(uuid, ctx, w, req)
if w.Code != http.StatusOK {
t.Errorf("Bad server response roi GET, status %s, for roi %q\n", w.Code, data.DataName())
}
var subvolJSON, expectedJSON interface{}
response := w.Body.Bytes()
if err := json.Unmarshal(response, &subvolJSON); err != nil {
t.Errorf("Can't unmarshal JSON: %s\n", w.Body.Bytes())
}
json.Unmarshal([]byte(expectedPartition), &expectedJSON)
if !reflect.DeepEqual(subvolJSON, expectedJSON) {
t.Errorf("Error doing optimized subvolume partitioning. Got bad result:\n%s\n",
string(response))
}
}
// Test added after error in getting two paths to the same ancestor k/v after merge.
func TestDiamondGetOnMerge(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, kvtype, "mergetest", config)
if err != nil {
t.Fatalf("Error creating new keyvalue instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Fatalf("Returned new data instance is not roi.Data\n")
}
// PUT a value
key1 := "mykey"
value1 := "some stuff"
key1req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid, data.DataName(), key1)
server.TestHTTP(t, "POST", key1req, strings.NewReader(value1))
if err = datastore.Commit(uuid, "my commit msg", []string{"stuff one", "stuff two"}); err != nil {
t.Errorf("Unable to lock root node %s: %v\n", uuid, err)
}
uuid2, err := datastore.NewVersion(uuid, "first child", nil)
if err != nil {
t.Fatalf("Unable to create 1st child off root %s: %v\n", uuid, err)
}
if err = datastore.Commit(uuid2, "first child", nil); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid2, err)
}
uuid3, err := datastore.NewVersion(uuid, "second child", nil)
if err != nil {
t.Fatalf("Unable to create 2nd child off root %s: %v\n", uuid, err)
}
if err = datastore.Commit(uuid3, "second child", nil); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid3, err)
}
child, err := datastore.Merge([]dvid.UUID{uuid2, uuid3}, "merging stuff", datastore.MergeConflictFree)
if err != nil {
t.Errorf("Error doing merge: %v\n", err)
}
// We should be able to see just the original uuid value of the k/v
childreq := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, child, data.DataName(), key1)
returnValue := server.TestHTTP(t, "GET", childreq, nil)
if string(returnValue) != value1 {
t.Errorf("Error on merged child, key %q: expected %q, got %q\n", key1, value1, string(returnValue))
}
}
// ForegroundROI creates a new ROI by determining all non-background blocks.
func (d *Data) ForegroundROI(req datastore.Request, reply *datastore.Response) error {
if d.Values.BytesPerElement() != 1 {
return fmt.Errorf("Foreground ROI command only implemented for 1 byte/voxel data!")
}
// Parse the request
var uuidStr, dataName, cmdStr, destName, backgroundStr string
req.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &destName, &backgroundStr)
// Get the version and repo
uuid, versionID, err := datastore.MatchingUUID(uuidStr)
if err != nil {
return err
}
if err = datastore.AddToNodeLog(uuid, []string{req.Command.String()}); err != nil {
return err
}
// Use existing destination data or a new ROI data.
var dest *roi.Data
dest, err = roi.GetByUUID(uuid, dvid.InstanceName(destName))
if err != nil {
config := dvid.NewConfig()
typeservice, err := datastore.TypeServiceByName("roi")
if err != nil {
return err
}
dataservice, err := datastore.NewData(uuid, typeservice, dvid.InstanceName(destName), config)
if err != nil {
return err
}
var ok bool
dest, ok = dataservice.(*roi.Data)
if !ok {
return fmt.Errorf("Could not create ROI data instance")
}
}
// Asynchronously process the voxels.
background, err := dvid.StringToPointNd(backgroundStr, ",")
if err != nil {
return err
}
go d.foregroundROI(versionID, dest, background)
return nil
}
// check subgraph endpoint
func TestLabelgraphPostAndDelete(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create the ROI dataservice.
uuid, _ := initTestRepo()
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, dtype, "lg", config)
if err != nil {
t.Errorf("Error creating new labelgraph instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Errorf("Returned new data instance is not labelgraph.Data\n")
}
// PUT a labelraph
subgraphRequest := fmt.Sprintf("%snode/%s/%s/subgraph", server.WebAPIPath, uuid, data.DataName())
server.TestHTTP(t, "POST", subgraphRequest, getGraphJSON())
// Get back the labelgraph
returnedData := server.TestHTTP(t, "GET", subgraphRequest, nil)
retgraph, err := loadGraphJSON(returnedData)
if err != nil {
t.Errorf("Error on getting back JSON from roi GET: %v\n", err)
}
// Make sure the two are the same.
if !reflect.DeepEqual(retgraph, getTestGraph()) {
t.Errorf("Bad PUT/GET ROI roundtrip\nOriginal:\n%s\nReturned:\n%s\n", getTestGraph(), retgraph)
}
// Delete the labelgraph
_ = server.TestHTTP(t, "DELETE", subgraphRequest, nil)
// Subgraph should now be empty
returnedData = server.TestHTTP(t, "GET", subgraphRequest, nil)
expectedResp := "{\"Transactions\":[],\"Vertices\":[],\"Edges\":[]}"
if string(returnedData) != expectedResp {
t.Errorf("Bad ROI after ROI delete. Should be %s got: %s\n", expectedResp, string(returnedData))
}
}
func TestMultiscale2dRepoPersistence(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Make source
uuid, _ := initTestRepo()
makeGrayscale(uuid, t, "grayscale")
// Make labels and set various properties
config := dvid.NewConfig()
config.Set("Placeholder", "true")
config.Set("Format", "jpg")
config.Set("Source", "grayscale")
dataservice, err := datastore.NewData(uuid, mstype, "myimagetile", config)
if err != nil {
t.Errorf("Unable to create imagetile instance: %v\n", err)
}
msdata, ok := dataservice.(*Data)
if !ok {
t.Fatalf("Can't cast imagetile data service into imagetile.Data\n")
}
oldData := *msdata
// Restart test datastore and see if datasets are still there.
if err = datastore.SaveDataByUUID(uuid, msdata); err != nil {
t.Fatalf("Unable to save repo during imagetile persistence test: %v\n", err)
}
datastore.CloseReopenTest()
dataservice2, err := datastore.GetDataByUUID(uuid, "myimagetile")
if err != nil {
t.Fatalf("Can't get keyvalue instance from reloaded test db: %v\n", err)
}
msdata2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not imagetile.Data\n")
}
if !reflect.DeepEqual(oldData.Properties, msdata2.Properties) {
t.Errorf("Expected properties %v, got %v\n", oldData.Properties, msdata2.Properties)
}
}
func TestROIPostAndDelete(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create the ROI dataservice.
uuid, _ := initTestRepo()
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, roitype, "roi", config)
if err != nil {
t.Errorf("Error creating new roi instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Errorf("Returned new data instance is not roi.Data\n")
}
// PUT an ROI
roiRequest := fmt.Sprintf("%snode/%s/%s/roi", server.WebAPIPath, uuid, data.DataName())
server.TestHTTP(t, "POST", roiRequest, getSpansJSON(testSpans))
// Get back the ROI
returnedData := server.TestHTTP(t, "GET", roiRequest, nil)
spans, err := putSpansJSON(returnedData)
if err != nil {
t.Errorf("Error on getting back JSON from roi GET: %v\n", err)
}
// Make sure the two are the same.
if !reflect.DeepEqual(spans, testSpans) {
t.Errorf("Bad PUT/GET ROI roundtrip\nOriginal:\n%s\nReturned:\n%s\n", testSpans, spans)
}
// Delete the ROI
_ = server.TestHTTP(t, "DELETE", roiRequest, nil)
// ROI should now be empty
returnedData = server.TestHTTP(t, "GET", roiRequest, nil)
if string(returnedData) != "[]" {
t.Errorf("Bad ROI after ROI delete. Should be [ ] got: %s\n", string(returnedData))
}
}
func TestLabelblkRepoPersistence(t *testing.T) {
tests.UseStore()
defer tests.CloseStore()
uuid, _ := initTestRepo()
// Make labels and set various properties
config := dvid.NewConfig()
config.Set("BlockSize", "12,13,14")
config.Set("VoxelSize", "1.1,2.8,11")
config.Set("VoxelUnits", "microns,millimeters,nanometers")
dataservice, err := datastore.NewData(uuid, labelsT, "mylabels", config)
if err != nil {
t.Errorf("Unable to create labels instance: %v\n", err)
}
labels, ok := dataservice.(*Data)
if !ok {
t.Errorf("Can't cast labels data service into Data\n")
}
oldData := *labels
// Restart test datastore and see if datasets are still there.
if err = datastore.SaveDataByUUID(uuid, labels); err != nil {
t.Fatalf("Unable to save repo during labels persistence test: %v\n", err)
}
tests.CloseReopenStore()
dataservice2, err := datastore.GetDataByUUID(uuid, "mylabels")
if err != nil {
t.Fatalf("Can't get labels instance from reloaded test db: %v\n", err)
}
labels2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not imageblk.Data\n")
}
if !oldData.Equals(labels2) {
t.Errorf("Expected %v, got %v\n", oldData, *labels2)
}
}
func TestFloat32RepoPersistence(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
// Make grayscale and set various properties
config := dvid.NewConfig()
config.Set("BlockSize", "12,13,14")
config.Set("VoxelSize", "1.1,2.8,11")
config.Set("VoxelUnits", "microns,millimeters,nanometers")
dataservice, err := datastore.NewData(uuid, floatimgT, "floatimg", config)
if err != nil {
t.Errorf("Unable to create float32 instance: %s\n", err)
}
floatimg, ok := dataservice.(*Data)
if !ok {
t.Errorf("Can't cast float32 data service into Data\n")
}
oldData := *floatimg
// Restart test datastore and see if datasets are still there.
if err = datastore.SaveDataByUUID(uuid, floatimg); err != nil {
t.Fatalf("Unable to save repo during floatimg persistence test: %v\n", err)
}
datastore.CloseReopenTest()
dataservice2, err := datastore.GetDataByUUIDName(uuid, "floatimg")
if err != nil {
t.Fatalf("Can't get floatimg instance from reloaded test db: %v\n", err)
}
floatimg2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not imageblk.Data\n")
}
if !oldData.Equals(floatimg2) {
t.Errorf("Expected %v, got %v\n", oldData, *floatimg2)
}
}
func TestKeyvalueRoundTrip(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, versionID := initTestRepo()
// Add data
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, kvtype, "roundtripper", config)
if err != nil {
t.Errorf("Error creating new keyvalue instance: %v\n", err)
}
kvdata, ok := dataservice.(*Data)
if !ok {
t.Errorf("Returned new data instance is not keyvalue.Data\n")
}
ctx := datastore.NewVersionedCtx(dataservice, versionID)
keyStr := "testkey.-{}03`~| %@\x01"
value := []byte("I like Japan and this is some unicode: \u65e5\u672c\u8a9e")
if err = kvdata.PutData(ctx, keyStr, value); err != nil {
t.Errorf("Could not put keyvalue data: %v\n", err)
}
retrieved, found, err := kvdata.GetData(ctx, keyStr)
if err != nil {
t.Fatalf("Could not get keyvalue data: %v\n", err)
}
if !found {
t.Fatalf("Could not find put keyvalue\n")
}
if bytes.Compare(value, retrieved) != 0 {
t.Errorf("keyvalue retrieved %q != put %q\n", string(retrieved), string(value))
}
}
func TestMultichan16RepoPersistence(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
// Make labels and set various properties
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, dtype, "mymultichan16", config)
if err != nil {
t.Errorf("Unable to create multichan16 instance: %v\n", err)
}
mcdata, ok := dataservice.(*Data)
if !ok {
t.Errorf("Can't cast multichan16 data service into multichan16.Data\n")
}
oldData := *mcdata
// Restart test datastore and see if datasets are still there.
if err = datastore.SaveDataByUUID(uuid, mcdata); err != nil {
t.Fatalf("Unable to save repo during multichan16 persistence test: %v\n", err)
}
datastore.CloseReopenTest()
dataservice2, err := datastore.GetDataByUUIDName(uuid, "mymultichan16")
if err != nil {
t.Fatalf("Can't get multichan16 instance from reloaded test db: %v\n", err)
}
mcdata2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not multichan16.Data\n")
}
if !oldData.Equals(mcdata2) {
t.Errorf("Expected %v, got %v\n", oldData, *mcdata2)
}
}
func TestKeyvalueRepoPersistence(t *testing.T) {
tests.UseStore()
defer tests.CloseStore()
uuid, _ := initTestRepo()
// Make labels and set various properties
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, kvtype, "mykv", config)
if err != nil {
t.Errorf("Unable to create keyvalue instance: %v\n", err)
}
kvdata, ok := dataservice.(*Data)
if !ok {
t.Errorf("Can't cast keyvalue data service into keyvalue.Data\n")
}
oldData := *kvdata
// Restart test datastore and see if datasets are still there.
if err = datastore.SaveDataByUUID(uuid, kvdata); err != nil {
t.Fatalf("Unable to save repo during keyvalue persistence test: %v\n", err)
}
tests.CloseReopenStore()
dataservice2, err := datastore.GetDataByUUID(uuid, "mykv")
if err != nil {
t.Fatalf("Can't get keyvalue instance from reloaded test db: %v\n", err)
}
kvdata2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not keyvalue.Data\n")
}
if !oldData.Equals(kvdata2) {
t.Errorf("Expected %v, got %v\n", oldData, *kvdata2)
}
}
func TestTileCheck(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Make source
uuid, _ := initTestRepo()
makeGrayscale(uuid, t, "grayscale")
// Make imagetile and set various properties
config := dvid.NewConfig()
config.Set("Placeholder", "true")
config.Set("Format", "jpg")
config.Set("Source", "grayscale")
tileservice, err := datastore.NewData(uuid, mstype, "myimagetile", config)
if err != nil {
t.Errorf("Unable to create imagetile instance: %v\n", err)
}
msdata, ok := tileservice.(*Data)
if !ok {
t.Fatalf("Can't cast imagetile data service into imagetile.Data\n")
}
// Store Metadata
url := fmt.Sprintf("%snode/%s/myimagetile/metadata", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", url, bytes.NewBufferString(testMetadata2))
// Create the ROI
_, err = datastore.NewData(uuid, roitype, "myroi", dvid.NewConfig())
if err != nil {
t.Errorf("Error creating new roi instance: %v\n", err)
}
// PUT an ROI
roiRequest := fmt.Sprintf("%snode/%s/myroi/roi", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", roiRequest, getSpansJSON(testSpans))
// Create fake filter
spec := fmt.Sprintf("roi:myroi,%s", uuid)
f, err := msdata.NewFilter(storage.FilterSpec(spec))
if err != nil {
t.Errorf("Couldn't make filter: %v\n", err)
}
if f == nil {
t.Fatalf("Couldn't detect myroi data instance\n")
}
// Check various key values for proper spatial checks.
var tx, ty int32
tx = (205 * 32) / 512
ty = (101 * 32) / 512
tile := dvid.ChunkPoint3d{tx, ty, 101 * 32}
scale := Scaling(0)
tkv := &storage.TKeyValue{K: NewTKey(tile, dvid.XY, scale)}
skip, err := f.Check(tkv)
if err != nil {
t.Errorf("Error on Check of key %q: %v\n", tkv.K, err)
}
if skip {
t.Errorf("Expected false skip, got %v for tile %s\n", skip, tile)
}
tile = dvid.ChunkPoint3d{tx, ty, 106 * 32}
tkv = &storage.TKeyValue{K: NewTKey(tile, dvid.XY, scale)}
skip, err = f.Check(tkv)
if err != nil {
t.Errorf("Error on Check of key %q: %v\n", tkv.K, err)
}
if !skip {
t.Errorf("Expected true skip, got %v for tile %s\n", skip, tile)
}
tx = (205 * 32) / 512
ty = (121 * 32) / 512
tile = dvid.ChunkPoint3d{tx, ty, 101 * 32}
tkv = &storage.TKeyValue{K: NewTKey(tile, dvid.XY, scale)}
skip, err = f.Check(tkv)
if err != nil {
t.Errorf("Error on Check of key %q: %v\n", tkv.K, err)
}
if !skip {
t.Errorf("Expected true skip, got %v for tile %s\n", skip, tile)
}
tx = (225 * 32) / 512
ty = (101 * 32) / 512
tile = dvid.ChunkPoint3d{tx, ty, 101 * 32}
tkv = &storage.TKeyValue{K: NewTKey(tile, dvid.XY, scale)}
skip, err = f.Check(tkv)
if err != nil {
t.Errorf("Error on Check of key %q: %v\n", tkv.K, err)
}
if !skip {
t.Errorf("Expected true skip, got %v for tile %s\n", skip, tile)
}
}
func TestROIRequests(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create the ROI dataservice.
uuid, _ := initTestRepo()
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, roitype, "roi", config)
if err != nil {
t.Errorf("Error creating new roi instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Errorf("Returned new data instance is not roi.Data\n")
}
// PUT an ROI
roiRequest := fmt.Sprintf("%snode/%s/%s/roi", server.WebAPIPath, uuid, data.DataName())
server.TestHTTP(t, "POST", roiRequest, getSpansJSON(testSpans))
// Get back the ROI
returnedData := server.TestHTTP(t, "GET", roiRequest, nil)
spans, err := putSpansJSON(returnedData)
if err != nil {
t.Errorf("Error on getting back JSON from roi GET: %v\n", err)
}
// Make sure the two are the same.
if !reflect.DeepEqual(spans, testSpans) {
t.Errorf("Bad PUT/GET ROI roundtrip\nOriginal:\n%s\nReturned:\n%s\n", testSpans, spans)
}
// Test the ptquery
ptqueryRequest := fmt.Sprintf("%snode/%s/%s/ptquery", server.WebAPIPath, uuid, data.DataName())
returnedData = server.TestHTTP(t, "POST", ptqueryRequest, getPointsJSON(testPoints))
inclusions, err := putInclusionJSON(returnedData)
if err != nil {
t.Fatalf("Error on getting back JSON from ptquery: %v\n", err)
}
// Make sure the two are the same.
if !reflect.DeepEqual(inclusions, expectedInclusions) {
t.Errorf("Bad ptquery results\nOriginal:\n%s\nReturned:\n%s\n", expectedInclusions, inclusions)
}
// Test ROI mask out of range -- should be all 0.
maskRequest := fmt.Sprintf("%snode/%s/%s/mask/0_1_2/100_100_100/10_40_70", server.WebAPIPath, uuid, data.DataName())
returnedData = server.TestHTTP(t, "GET", maskRequest, nil)
if len(returnedData) != 100*100*100 {
t.Errorf("Expected mask volume of %d bytes, got %d bytes instead\n", 100*100*100, len(returnedData))
}
for i, value := range returnedData {
if value != 0 {
t.Errorf("Expected all-zero mask, got %d at index %d\n", value, i)
break
}
}
// Test ROI mask within range.
maskRequest = fmt.Sprintf("%snode/%s/%s/mask/0_1_2/100_100_100/6350_3232_3200", server.WebAPIPath, uuid, data.DataName())
returnedData = server.TestHTTP(t, "GET", maskRequest, nil)
if len(returnedData) != 100*100*100 {
t.Errorf("Expected mask volume of %d bytes, got %d bytes instead\n", 100*100*100, len(returnedData))
}
// Check first block plane
for y := 0; y < 100; y++ {
for x := 0; x < 100; x++ {
value := returnedData[y*100+x]
if x < 50 && value != 0 {
t.Errorf("Expected mask to be zero at (%d, %d) before ROI, got %d instead\n", x, y, value)
break
}
if x >= 50 && y < 64 && value != 1 {
t.Errorf("Expected mask to be 1 at (%d, %d) within ROI, got %d instead\n", x, y, value)
break
}
// tuple{100, 103, 201, 212}
if x <= 81 && y >= 64 && y < 96 && value != 0 {
t.Errorf("Expected mask to be zero at (%d, %d) before ROI, got %d instead\n", x, y, value)
break
}
if x > 81 && y >= 64 && y < 96 && value != 1 {
t.Errorf("Expected mask to be 1 at (%d, %d) within ROI, got %d instead\n", x, y, value)
break
}
}
}
// Check second block plane
offset := 32 * 100 * 100 // moves to next block in Z
for y := 0; y < 100; y++ {
for x := 0; x < 100; x++ {
value := returnedData[offset+y*100+x]
if x < 50 && value != 0 {
t.Errorf("Expected mask to be zero at (%d, %d) before ROI, got %d instead\n", x, y, value)
break
}
if x <= 81 && y < 32 && value != 0 {
t.Errorf("Expected mask to be zero at (%d, %d) before ROI, got %d instead\n", x, y, value)
break
}
if x > 81 && y < 32 && value != 1 {
t.Errorf("Expected mask to be 1 at (%d, %d) within ROI, got %d instead\n", x, y, value)
break
}
if y >= 32 && value != 0 {
t.Errorf("Expected mask to be zero at (%d, %d) before ROI, got %d instead\n", x, y, value)
break
}
}
}
// Check last block plane
offset = 96 * 100 * 100 // moves to last ROI layer in Z
for y := 0; y < 100; y++ {
for x := 0; x < 100; x++ {
value := returnedData[offset+y*100+x]
if x < 50 && value != 0 {
t.Errorf("Expected mask to be zero at (%d, %d) before ROI, got %d instead\n", x, y, value)
break
}
if x >= 50 && y < 32 && value != 1 {
t.Errorf("Expected mask to be 1 at (%d, %d) within ROI, got %d instead\n", x, y, value)
break
}
if y >= 32 && y < 64 && value != 0 {
t.Errorf("Expected mask to be zero at (%d, %d) before ROI, got %d instead\n", x, y, value)
break
}
if x >= 50 && y >= 64 && y < 96 && value != 1 {
t.Errorf("Expected mask to be 1 at (%d, %d) within ROI, got %d instead\n", x, y, value)
break
}
if y >= 96 && value != 0 {
t.Errorf("Expected mask to be zero at (%d, %d) before ROI, got %d instead\n", x, y, value)
break
}
}
}
}
func TestFilter(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
// Create testbed volume and data instances
uuid, _ := initTestRepo()
var config dvid.Config
server.CreateTestInstance(t, uuid, "labelblk", "labels", config)
d, err := datastore.NewData(uuid, labelvolT, "bodies", config)
if err != nil {
t.Fatalf("Unable to create labelvol instance: %s\n", err)
}
server.CreateTestSync(t, uuid, "labels", "bodies")
server.CreateTestSync(t, uuid, "bodies", "labels")
// Populate the labels, which should automatically populate the labelvol
_ = createLabelTestVolume(t, uuid, "labels")
if err := datastore.BlockOnUpdating(uuid, "bodies"); err != nil {
t.Fatalf("Error blocking on sync of labels -> bodies: %v\n", err)
}
// Create a ROI that will be used for filter test.
server.CreateTestInstance(t, uuid, "roi", "myroi", config)
roiRequest := fmt.Sprintf("%snode/%s/myroi/roi", server.WebAPIPath, uuid)
server.TestHTTP(t, "POST", roiRequest, getROIReader())
// Create the filter spec
fs := storage.FilterSpec(fmt.Sprintf("roi:myroi,%s", uuid))
var filter storage.Filter
filterer, ok := d.(storage.Filterer)
if !ok {
t.Fatalf("labelvol instance does not implement storage.Filterer\n")
}
filter, err = filterer.NewFilter(fs)
if err != nil {
t.Fatalf("Can't create filter from spec %q: %v\n", fs, err)
}
if filter == nil {
t.Fatalf("No filter could be created from spec %q\n", fs)
}
// Test the filter.
tkv := storage.TKeyValue{K: NewTKey(23, dvid.ChunkPoint3d{0, 0, 0}.ToIZYXString())}
skip, err := filter.Check(&tkv)
if !skip {
t.Errorf("Expected filter check 1 to skip, instead filter.Check() returned not skip")
}
tkv = storage.TKeyValue{K: NewTKey(23, dvid.ChunkPoint3d{1, 1, 1}.ToIZYXString())}
skip, err = filter.Check(&tkv)
if skip {
t.Errorf("Expected filter check 2 to not skip!")
}
tkv = storage.TKeyValue{K: NewTKey(23, dvid.ChunkPoint3d{2, 1, 2}.ToIZYXString())}
skip, err = filter.Check(&tkv)
if skip {
t.Errorf("Expected filter check 2 to not skip!")
}
tkv = storage.TKeyValue{K: NewTKey(23, dvid.ChunkPoint3d{3, 1, 1}.ToIZYXString())}
skip, err = filter.Check(&tkv)
if !skip {
t.Errorf("Expected filter check 3 to skip!")
}
}
func TestTagRequests(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, syntype, "mysynapses", config)
if err != nil {
t.Fatalf("Error creating new data instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Fatalf("Returned new data instance is not synapse.Data\n")
}
// PUT first batch of synapses
testJSON, err := json.Marshal(testTagData)
if err != nil {
t.Fatal(err)
}
url1 := fmt.Sprintf("%snode/%s/%s/elements", server.WebAPIPath, uuid, data.DataName())
server.TestHTTP(t, "POST", url1, strings.NewReader(string(testJSON)))
// Test Tags
expected := Elements{
{
ElementNR{
Pos: dvid.Point3d{15, 27, 35}, // Label 1
Kind: PreSyn,
Tags: []Tag{"Synapse1", "Zlt90"},
Prop: map[string]string{
"Im a T-Bar": "yes",
"I'm not a PSD": "sure",
"i'm really special": "",
},
},
[]Relationship{{Rel: PreSynTo, To: dvid.Point3d{20, 30, 40}}, {Rel: PreSynTo, To: dvid.Point3d{14, 25, 37}}, {Rel: PreSynTo, To: dvid.Point3d{33, 30, 31}}},
},
{
ElementNR{
Pos: dvid.Point3d{21, 33, 40}, // Label 2
Kind: PostSyn,
Tags: []Tag{"Synapse1"},
},
[]Relationship{{Rel: PostSynTo, To: dvid.Point3d{15, 27, 35}}},
},
}
tag := Tag("Synapse1")
testResponse(t, expected, "%snode/%s/%s/tag/%s?relationships=true", server.WebAPIPath, uuid, data.DataName(), tag)
expected = Elements{
{
ElementNR{
Pos: dvid.Point3d{20, 30, 40}, // Label 2
Kind: PostSyn,
Tags: []Tag{"Synapse10"},
},
[]Relationship{{Rel: PostSynTo, To: dvid.Point3d{15, 27, 35}}},
},
}
tag = Tag("Synapse10")
testResponse(t, expected, "%snode/%s/%s/tag/%s?relationships=true", server.WebAPIPath, uuid, data.DataName(), tag)
expected = Elements{
{
ElementNR{
Pos: dvid.Point3d{14, 25, 37}, // Label 3
Kind: PostSyn,
Tags: []Tag{"Synapse11", "Zlt90"},
},
[]Relationship{{Rel: PostSynTo, To: dvid.Point3d{15, 27, 35}}},
},
}
tag = Tag("Synapse11")
testResponse(t, expected, "%snode/%s/%s/tag/%s?relationships=true", server.WebAPIPath, uuid, data.DataName(), tag)
expected = Elements{
{
ElementNR{
Pos: dvid.Point3d{33, 30, 31},
Kind: PostSyn,
Tags: []Tag{"Synapse111", "Zlt90"},
},
[]Relationship{{Rel: PostSynTo, To: dvid.Point3d{15, 27, 35}}},
},
}
tag = Tag("Synapse111")
testResponse(t, expected, "%snode/%s/%s/tag/%s?relationships=true", server.WebAPIPath, uuid, data.DataName(), tag)
// delete an annotation and check if its deleted in tag
delurl := fmt.Sprintf("%snode/%s/%s/element/15_27_35", server.WebAPIPath, uuid, data.DataName())
server.TestHTTP(t, "DELETE", delurl, nil)
expected = Elements{
{
ElementNR{
Pos: dvid.Point3d{21, 33, 40}, // Label 2
Kind: PostSyn,
Tags: []Tag{"Synapse1"},
},
[]Relationship{{Rel: PostSynTo, To: dvid.Point3d{15, 27, 35}}},
},
}
testResponse(t, expected, "%snode/%s/%s/tag/Synapse1?relationships=true", server.WebAPIPath, uuid, data.DataName())
}
// CreateComposite creates a new rgba8 image by combining hash of labels + the grayscale
func (d *Data) CreateComposite(request datastore.Request, reply *datastore.Response) error {
timedLog := dvid.NewTimeLog()
// Parse the request
var uuidStr, dataName, cmdStr, grayscaleName, destName string
request.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &grayscaleName, &destName)
// Get the version
uuid, v, err := datastore.MatchingUUID(uuidStr)
if err != nil {
return err
}
// Log request
if err = datastore.AddToNodeLog(uuid, []string{request.Command.String()}); err != nil {
return err
}
// Get the grayscale data.
dataservice, err := datastore.GetDataByUUIDName(uuid, dvid.InstanceName(grayscaleName))
if err != nil {
return err
}
grayscale, ok := dataservice.(*imageblk.Data)
if !ok {
return fmt.Errorf("%s is not the name of uint8 data", grayscaleName)
}
// Create a new rgba8blk data.
var compservice datastore.DataService
compservice, err = datastore.GetDataByUUIDName(uuid, dvid.InstanceName(destName))
if err == nil {
return fmt.Errorf("Data instance with name %q already exists", destName)
}
typeService, err := datastore.TypeServiceByName("rgba8blk")
if err != nil {
return fmt.Errorf("Could not get rgba8 type service from DVID")
}
config := dvid.NewConfig()
compservice, err = datastore.NewData(uuid, typeService, dvid.InstanceName(destName), config)
if err != nil {
return err
}
composite, ok := compservice.(*imageblk.Data)
if !ok {
return fmt.Errorf("Error: %s was unable to be set to rgba8 data", destName)
}
// Iterate through all labels and grayscale chunks incrementally in Z, a layer at a time.
wg := new(sync.WaitGroup)
op := &compositeOp{grayscale, composite, v}
chunkOp := &storage.ChunkOp{op, wg}
store, err := d.GetOrderedKeyValueDB()
if err != nil {
return err
}
ctx := datastore.NewVersionedCtx(d, v)
extents := d.Extents()
blockBeg := imageblk.NewTKey(extents.MinIndex)
blockEnd := imageblk.NewTKey(extents.MaxIndex)
err = store.ProcessRange(ctx, blockBeg, blockEnd, chunkOp, storage.ChunkFunc(d.CreateCompositeChunk))
wg.Wait()
// Set new mapped data to same extents.
composite.Properties.Extents = grayscale.Properties.Extents
if err := datastore.SaveDataByUUID(uuid, composite); err != nil {
dvid.Infof("Could not save new data '%s': %v\n", destName, err)
}
timedLog.Infof("Created composite of %s and %s", grayscaleName, destName)
return nil
}
func testRequest(t *testing.T, uuid dvid.UUID, versionID dvid.VersionID, name dvid.InstanceName) {
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, kvtype, name, config)
if err != nil {
t.Fatalf("Error creating new keyvalue instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Fatalf("Returned new data instance is not roi.Data\n")
}
// PUT a value
key1 := "mykey"
value1 := "some stuff"
key1req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid, data.DataName(), key1)
server.TestHTTP(t, "POST", key1req, strings.NewReader(value1))
// Get back k/v
returnValue := server.TestHTTP(t, "GET", key1req, nil)
if string(returnValue) != value1 {
t.Errorf("Error on key %q: expected %s, got %s\n", key1, value1, string(returnValue))
}
// Expect error if no key used.
badrequest := fmt.Sprintf("%snode/%s/%s/key/", server.WebAPIPath, uuid, data.DataName())
server.TestBadHTTP(t, "GET", badrequest, nil)
// Add 2nd k/v
key2 := "my2ndkey"
value2 := "more good stuff"
key2req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid, data.DataName(), key2)
server.TestHTTP(t, "POST", key2req, strings.NewReader(value2))
// Add 3rd k/v
key3 := "heresanotherkey"
value3 := "my 3rd value"
key3req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid, data.DataName(), key3)
server.TestHTTP(t, "POST", key3req, strings.NewReader(value3))
// Check return of first two keys in range.
rangereq := fmt.Sprintf("%snode/%s/%s/keyrange/%s/%s", server.WebAPIPath, uuid, data.DataName(),
"my", "zebra")
returnValue = server.TestHTTP(t, "GET", rangereq, nil)
var retrievedKeys []string
if err = json.Unmarshal(returnValue, &retrievedKeys); err != nil {
t.Errorf("Bad key range request unmarshal: %v\n", err)
}
if len(retrievedKeys) != 2 || retrievedKeys[1] != "mykey" && retrievedKeys[0] != "my2ndKey" {
t.Errorf("Bad key range request return. Expected: [%q,%q]. Got: %s\n",
key2, key1, string(returnValue))
}
// Check return of all keys
allkeyreq := fmt.Sprintf("%snode/%s/%s/keys", server.WebAPIPath, uuid, data.DataName())
returnValue = server.TestHTTP(t, "GET", allkeyreq, nil)
if err = json.Unmarshal(returnValue, &retrievedKeys); err != nil {
t.Errorf("Bad key range request unmarshal: %v\n", err)
}
if len(retrievedKeys) != 3 || retrievedKeys[0] != "heresanotherkey" && retrievedKeys[1] != "my2ndKey" && retrievedKeys[2] != "mykey" {
t.Errorf("Bad all key request return. Expected: [%q,%q,%q]. Got: %s\n",
key3, key2, key1, string(returnValue))
}
}
func TestKeyvalueUnversioned(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
config := dvid.NewConfig()
config.Set("versioned", "false")
dataservice, err := datastore.NewData(uuid, kvtype, "unversiontest", config)
if err != nil {
t.Fatalf("Error creating new keyvalue instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Fatalf("Returned new data instance is not roi.Data\n")
}
// PUT a value
key1 := "mykey"
value1 := "some stuff"
key1req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid, data.DataName(), key1)
server.TestHTTP(t, "POST", key1req, strings.NewReader(value1))
// Add 2nd k/v
key2 := "my2ndkey"
value2 := "more good stuff"
key2req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid, data.DataName(), key2)
server.TestHTTP(t, "POST", key2req, strings.NewReader(value2))
// Create a new version in repo
if err = datastore.Commit(uuid, "my commit msg", []string{"stuff one", "stuff two"}); err != nil {
t.Errorf("Unable to lock root node %s: %v\n", uuid, err)
}
uuid2, err := datastore.NewVersion(uuid, "some child", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid, err)
}
_, err = datastore.VersionFromUUID(uuid2)
if err != nil {
t.Fatalf("Unable to get version ID from new uuid %s: %v\n", uuid2, err)
}
// Change the 2nd k/v
uuid2val := "this is completely different"
uuid2req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid2, data.DataName(), key2)
server.TestHTTP(t, "POST", uuid2req, strings.NewReader(uuid2val))
// Now the first version value should equal the new value
returnValue := server.TestHTTP(t, "GET", key2req, nil)
if string(returnValue) != uuid2val {
t.Errorf("Error on unversioned key %q: expected %s, got %s\n", key2, uuid2val, string(returnValue))
}
// Get the second version value
returnValue = server.TestHTTP(t, "GET", uuid2req, nil)
if string(returnValue) != uuid2val {
t.Errorf("Error on unversioned key %q: expected %s, got %s\n", key2, uuid2val, string(returnValue))
}
// Check return of first two keys in range.
rangereq := fmt.Sprintf("%snode/%s/%s/keyrange/%s/%s", server.WebAPIPath, uuid, data.DataName(),
"my", "zebra")
returnValue = server.TestHTTP(t, "GET", rangereq, nil)
var retrievedKeys []string
if err = json.Unmarshal(returnValue, &retrievedKeys); err != nil {
t.Errorf("Bad key range request unmarshal: %v\n", err)
}
if len(retrievedKeys) != 2 || retrievedKeys[1] != "mykey" && retrievedKeys[0] != "my2ndKey" {
t.Errorf("Bad key range request return. Expected: [%q,%q]. Got: %s\n",
key1, key2, string(returnValue))
}
// Commit the repo
if err = datastore.Commit(uuid2, "my 2nd commit msg", []string{"changed 2nd k/v"}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid2, err)
}
// Make grandchild of root
uuid3, err := datastore.NewVersion(uuid2, "some child", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid2, err)
}
// Delete the 2nd k/v
uuid3req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid3, data.DataName(), key2)
server.TestHTTP(t, "DELETE", uuid3req, nil)
server.TestBadHTTP(t, "GET", uuid3req, nil)
// Make sure the 2nd k/v is now missing for previous versions.
server.TestBadHTTP(t, "GET", key2req, nil)
server.TestBadHTTP(t, "GET", uuid2req, nil)
// Make a child
if err = datastore.Commit(uuid3, "my 3rd commit msg", []string{"deleted 2nd k/v"}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid2, err)
}
uuid4, err := datastore.NewVersion(uuid3, "some child", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid3, err)
}
// Change the 2nd k/v
uuid4val := "we are reintroducing this k/v"
uuid4req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid4, data.DataName(), key2)
server.TestHTTP(t, "POST", uuid4req, strings.NewReader(uuid4val))
if err = datastore.Commit(uuid4, "commit node 4", []string{"we modified stuff"}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid4, err)
}
// Make sure the 2nd k/v is correct for each of previous versions.
returnValue = server.TestHTTP(t, "GET", key2req, nil)
if string(returnValue) != uuid4val {
t.Errorf("Error on first version, key %q: expected %s, got %s\n", key2, uuid4val, string(returnValue))
}
returnValue = server.TestHTTP(t, "GET", uuid2req, nil)
if string(returnValue) != uuid4val {
t.Errorf("Error on second version, key %q: expected %s, got %s\n", key2, uuid4val, string(returnValue))
}
returnValue = server.TestHTTP(t, "GET", uuid3req, nil)
if string(returnValue) != uuid4val {
t.Errorf("Error on third version, key %q: expected %s, got %s\n", key2, uuid4val, string(returnValue))
}
returnValue = server.TestHTTP(t, "GET", uuid4req, nil)
if string(returnValue) != uuid4val {
t.Errorf("Error on fourth version, key %q: expected %s, got %s\n", key2, uuid4val, string(returnValue))
}
}
func TestKeyvalueVersioning(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
config := dvid.NewConfig()
dataservice, err := datastore.NewData(uuid, kvtype, "versiontest", config)
if err != nil {
t.Fatalf("Error creating new keyvalue instance: %v\n", err)
}
data, ok := dataservice.(*Data)
if !ok {
t.Fatalf("Returned new data instance is not roi.Data\n")
}
// PUT a value
key1 := "mykey"
value1 := "some stuff"
key1req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid, data.DataName(), key1)
server.TestHTTP(t, "POST", key1req, strings.NewReader(value1))
// Add 2nd k/v
key2 := "my2ndkey"
value2 := "more good stuff"
key2req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid, data.DataName(), key2)
server.TestHTTP(t, "POST", key2req, strings.NewReader(value2))
// Create a new version in repo
if err = datastore.Commit(uuid, "my commit msg", []string{"stuff one", "stuff two"}); err != nil {
t.Errorf("Unable to lock root node %s: %v\n", uuid, err)
}
uuid2, err := datastore.NewVersion(uuid, "some child", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid, err)
}
_, err = datastore.VersionFromUUID(uuid2)
if err != nil {
t.Fatalf("Unable to get version ID from new uuid %s: %v\n", uuid2, err)
}
// Change the 2nd k/v
uuid2val := "this is completely different"
uuid2req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid2, data.DataName(), key2)
server.TestHTTP(t, "POST", uuid2req, strings.NewReader(uuid2val))
// Get the first version value
returnValue := server.TestHTTP(t, "GET", key2req, nil)
if string(returnValue) != value2 {
t.Errorf("Error on first version, key %q: expected %s, got %s\n", key2, value2, string(returnValue))
}
// Get the second version value
returnValue = server.TestHTTP(t, "GET", uuid2req, nil)
if string(returnValue) != uuid2val {
t.Errorf("Error on second version, key %q: expected %s, got %s\n", key2, uuid2val, string(returnValue))
}
// Check return of first two keys in range.
rangereq := fmt.Sprintf("%snode/%s/%s/keyrange/%s/%s", server.WebAPIPath, uuid, data.DataName(),
"my", "zebra")
returnValue = server.TestHTTP(t, "GET", rangereq, nil)
var retrievedKeys []string
if err = json.Unmarshal(returnValue, &retrievedKeys); err != nil {
t.Errorf("Bad key range request unmarshal: %v\n", err)
}
if len(retrievedKeys) != 2 || retrievedKeys[1] != "mykey" && retrievedKeys[0] != "my2ndKey" {
t.Errorf("Bad key range request return. Expected: [%q,%q]. Got: %s\n",
key1, key2, string(returnValue))
}
// Commit the repo
if err = datastore.Commit(uuid2, "my 2nd commit msg", []string{"changed 2nd k/v"}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid2, err)
}
// Make grandchild of root
uuid3, err := datastore.NewVersion(uuid2, "some child", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid2, err)
}
// Delete the 2nd k/v
uuid3req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid3, data.DataName(), key2)
server.TestHTTP(t, "DELETE", uuid3req, nil)
server.TestBadHTTP(t, "GET", uuid3req, nil)
// Make sure the 2nd k/v is correct for each of previous versions.
returnValue = server.TestHTTP(t, "GET", key2req, nil)
if string(returnValue) != value2 {
t.Errorf("Error on first version, key %q: expected %s, got %s\n", key2, value2, string(returnValue))
}
returnValue = server.TestHTTP(t, "GET", uuid2req, nil)
if string(returnValue) != uuid2val {
t.Errorf("Error on second version, key %q: expected %s, got %s\n", key2, uuid2val, string(returnValue))
}
// Make a child
if err = datastore.Commit(uuid3, "my 3rd commit msg", []string{"deleted 2nd k/v"}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid2, err)
}
uuid4, err := datastore.NewVersion(uuid3, "some child", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid3, err)
}
// Change the 2nd k/v
uuid4val := "we are reintroducing this k/v"
uuid4req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid4, data.DataName(), key2)
server.TestHTTP(t, "POST", uuid4req, strings.NewReader(uuid4val))
if err = datastore.Commit(uuid4, "commit node 4", []string{"we modified stuff"}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid4, err)
}
// Make sure the 2nd k/v is correct for each of previous versions.
returnValue = server.TestHTTP(t, "GET", key2req, nil)
if string(returnValue) != value2 {
t.Errorf("Error on first version, key %q: expected %s, got %s\n", key2, value2, string(returnValue))
}
returnValue = server.TestHTTP(t, "GET", uuid2req, nil)
if string(returnValue) != uuid2val {
t.Errorf("Error on second version, key %q: expected %s, got %s\n", key2, uuid2val, string(returnValue))
}
server.TestBadHTTP(t, "GET", uuid3req, nil)
returnValue = server.TestHTTP(t, "GET", uuid4req, nil)
if string(returnValue) != uuid4val {
t.Errorf("Error on fourth version, key %q: expected %s, got %s\n", key2, uuid4val, string(returnValue))
}
// Let's try a merge!
// Make a child off the 2nd version from root.
uuid5, err := datastore.NewVersion(uuid2, "some child", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid2, err)
}
// Store new stuff in 2nd k/v
uuid5val := "this is forked value"
uuid5req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid5, data.DataName(), key2)
server.TestHTTP(t, "POST", uuid5req, strings.NewReader(uuid5val))
returnValue = server.TestHTTP(t, "GET", uuid5req, nil)
if string(returnValue) != uuid5val {
t.Errorf("Error on merged child, key %q: expected %q, got %q\n", key2, uuid5val, string(returnValue))
}
// Commit node
if err = datastore.Commit(uuid5, "forked node", []string{"we modified stuff"}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid5, err)
}
// Should be able to merge using conflict-free (disjoint at key level) merge even though
// its conflicted. Will get lazy error on request.
badChild, err := datastore.Merge([]dvid.UUID{uuid4, uuid5}, "some child", datastore.MergeConflictFree)
if err != nil {
t.Errorf("Error doing merge: %v\n", err)
}
childreq := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, badChild, data.DataName(), key2)
server.TestBadHTTP(t, "GET", childreq, nil)
// Manually fix conflict: Branch, and then delete 2nd k/v and commit.
uuid6, err := datastore.NewVersion(uuid5, "some child", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid5, err)
}
uuid6req := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, uuid6, data.DataName(), key2)
server.TestHTTP(t, "DELETE", uuid6req, nil)
server.TestBadHTTP(t, "GET", uuid6req, nil)
if err = datastore.Commit(uuid6, "deleted forked node 2nd k/v", []string{"we modified stuff"}); err != nil {
t.Errorf("Unable to commit node %s: %s\n", uuid6, err)
}
// Should now be able to correctly merge the two branches.
goodChild, err := datastore.Merge([]dvid.UUID{uuid4, uuid6}, "merging stuff", datastore.MergeConflictFree)
if err != nil {
t.Errorf("Error doing merge: %v\n", err)
}
// We should be able to see just the original uuid4 value of the 2nd k/v
childreq = fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, goodChild, data.DataName(), key2)
returnValue = server.TestHTTP(t, "GET", childreq, nil)
if string(returnValue) != uuid4val {
t.Errorf("Error on merged child, key %q: expected %q, got %q\n", key2, uuid4val, string(returnValue))
}
// Apply the automatic conflict resolution using ordering.
payload := fmt.Sprintf(`{"data":["versiontest"],"parents":[%q,%q],"note":"automatic resolved merge"}`, uuid5, uuid4)
resolveReq := fmt.Sprintf("%srepo/%s/resolve", server.WebAPIPath, uuid4)
returnValue = server.TestHTTP(t, "POST", resolveReq, bytes.NewBufferString(payload))
resolveResp := struct {
Child dvid.UUID `json:"child"`
}{}
if err := json.Unmarshal(returnValue, &resolveResp); err != nil {
t.Fatalf("Can't parse return of resolve request: %s\n", string(returnValue))
}
// We should now see the uuid5 version of the 2nd k/v in the returned merged node.
childreq = fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, resolveResp.Child, data.DataName(), key2)
returnValue = server.TestHTTP(t, "GET", childreq, nil)
if string(returnValue) != uuid5val {
t.Errorf("Error on auto merged child, key %q: expected %q, got %q\n", key2, uuid5val, string(returnValue))
}
// Introduce a child off root but don't add 2nd k/v to it.
uuid7, err := datastore.NewVersion(uuid, "2nd child off root", nil)
if err != nil {
t.Fatalf("Unable to create new version off node %s: %v\n", uuid, err)
}
if err = datastore.Commit(uuid7, "useless node", []string{"we modified nothing!"}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", uuid7, err)
}
// Now merge the previously merged node with the newly created "blank" child off root.
if err = datastore.Commit(goodChild, "this was a good merge", []string{}); err != nil {
t.Errorf("Unable to commit node %s: %v\n", goodChild, err)
}
merge2, err := datastore.Merge([]dvid.UUID{goodChild, uuid7}, "merging a useless path", datastore.MergeConflictFree)
if err != nil {
t.Errorf("Error doing merge: %v\n", err)
}
merge3, err := datastore.Merge([]dvid.UUID{uuid7, goodChild}, "merging a useless path in reverse order", datastore.MergeConflictFree)
if err != nil {
t.Errorf("Error doing merge: %v\n", err)
}
// We should still be conflict free since 2nd key in left parent path will take precedent over shared 2nd key
// in root. This tests our invalidation of ancestors.
toughreq := fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, merge2, data.DataName(), key2)
returnValue = server.TestHTTP(t, "GET", toughreq, nil)
if string(returnValue) != uuid4val {
t.Errorf("Error on merged child, key %q: expected %q, got %q\n", key2, uuid4val, string(returnValue))
}
toughreq = fmt.Sprintf("%snode/%s/%s/key/%s", server.WebAPIPath, merge3, data.DataName(), key2)
returnValue = server.TestHTTP(t, "GET", toughreq, nil)
if string(returnValue) != uuid4val {
t.Errorf("Error on merged child, key %q: expected %q, got %q\n", key2, uuid4val, string(returnValue))
}
}
// Do acts as a switchboard for remote command execution
func (c *RPCConnection) Do(cmd datastore.Request, reply *datastore.Response) error {
if reply == nil {
dvid.Debugf("reply is nil coming in!\n")
return nil
}
if cmd.Name() == "" {
return fmt.Errorf("Server error: got empty command!")
}
switch cmd.Name() {
case "help":
reply.Text = fmt.Sprintf(RPCHelpMessage, config.RPCAddress(), config.HTTPAddress())
case "shutdown":
Shutdown()
// Make this process shutdown in a second to allow time for RPC to finish.
// TODO -- Better way to do this?
log.Printf("DVID server halted due to 'shutdown' command.")
reply.Text = fmt.Sprintf("DVID server at %s has been halted.\n", config.RPCAddress())
go func() {
time.Sleep(1 * time.Second)
os.Exit(0)
}()
case "types":
if len(cmd.Command) == 1 {
text := "\nData Types within this DVID Server\n"
text += "----------------------------------\n"
mapTypes, err := datastore.Types()
if err != nil {
return fmt.Errorf("Error trying to retrieve data types within this DVID server!")
}
for url, typeservice := range mapTypes {
text += fmt.Sprintf("%-20s %s\n", typeservice.GetTypeName(), url)
}
reply.Text = text
} else {
if len(cmd.Command) != 3 || cmd.Command[2] != "help" {
return fmt.Errorf("Unknown types command: %q", cmd.Command)
}
var typename string
cmd.CommandArgs(1, &typename)
typeservice, err := datastore.TypeServiceByName(dvid.TypeString(typename))
if err != nil {
return err
}
reply.Text = typeservice.Help()
}
case "repos":
var subcommand, alias, description, uuidStr string
cmd.CommandArgs(1, &subcommand, &alias, &description, &uuidStr)
switch subcommand {
case "new":
var assign *dvid.UUID
if uuidStr == "" {
assign = nil
} else {
u := dvid.UUID(uuidStr)
assign = &u
}
root, err := datastore.NewRepo(alias, description, assign)
if err != nil {
return err
}
if err := datastore.SetRepoAlias(root, alias); err != nil {
return err
}
if err := datastore.SetRepoDescription(root, description); err != nil {
return err
}
reply.Text = fmt.Sprintf("New repo %q created with head node %s\n", alias, root)
default:
return fmt.Errorf("Unknown repos command: %q", subcommand)
}
case "repo":
var uuidStr, subcommand string
cmd.CommandArgs(1, &uuidStr, &subcommand)
uuid, _, err := datastore.MatchingUUID(uuidStr)
if err != nil {
return err
}
switch subcommand {
case "new":
var typename, dataname string
cmd.CommandArgs(3, &typename, &dataname)
// Get TypeService
typeservice, err := datastore.TypeServiceByName(dvid.TypeString(typename))
if err != nil {
return err
}
// Create new data
config := cmd.Settings()
_, err = datastore.NewData(uuid, typeservice, dvid.InstanceName(dataname), config)
if err != nil {
return err
}
reply.Text = fmt.Sprintf("Data %q [%s] added to node %s\n", dataname, typename, uuid)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "branch":
cmd.CommandArgs(3, &uuidStr)
var assign *dvid.UUID
if uuidStr == "" {
assign = nil
} else {
u := dvid.UUID(uuidStr)
assign = &u
}
child, err := datastore.NewVersion(uuid, fmt.Sprintf("branch of %s", uuid), assign)
if err != nil {
return err
}
reply.Text = fmt.Sprintf("Branch %s added to node %s\n", child, uuid)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "merge":
uuids := cmd.CommandArgs(2)
parents := make([]dvid.UUID, len(uuids)+1)
parents[0] = dvid.UUID(uuid)
i := 1
for uuid := range uuids {
parents[i] = dvid.UUID(uuid)
i++
}
child, err := datastore.Merge(parents, fmt.Sprintf("merge of parents %v", parents), datastore.MergeConflictFree)
if err != nil {
return err
}
reply.Text = fmt.Sprintf("Parents %v merged into node %s\n", parents, child)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "push":
/*
var target string
cmd.CommandArgs(3, &target)
config := cmd.Settings()
if err = datastore.Push(repo, target, config); err != nil {
return err
}
reply.Text = fmt.Sprintf("Repo %q pushed to %q\n", repo.RootUUID(), target)
*/
return fmt.Errorf("push command has been temporarily suspended")
default:
return fmt.Errorf("Unknown command: %q", cmd)
}
case "node":
var uuidStr, descriptor string
cmd.CommandArgs(1, &uuidStr, &descriptor)
uuid, _, err := datastore.MatchingUUID(uuidStr)
if err != nil {
return err
}
// Get the DataService
dataname := dvid.InstanceName(descriptor)
var subcommand string
cmd.CommandArgs(3, &subcommand)
dataservice, err := datastore.GetDataByUUID(uuid, dataname)
if err != nil {
return err
}
if subcommand == "help" {
reply.Text = dataservice.Help()
return nil
}
return dataservice.DoRPC(cmd, reply)
default:
return fmt.Errorf("Unknown command: '%s'", cmd)
}
return nil
}
func TestROIRepoPersistence(t *testing.T) {
datastore.OpenTest()
defer datastore.CloseTest()
uuid, _ := initTestRepo()
// Add data
config := dvid.NewConfig()
dataservice1, err := datastore.NewData(uuid, roitype, "myroi", config)
if err != nil {
t.Errorf("Error creating new roi instance: %v\n", err)
}
roi1, ok := dataservice1.(*Data)
if !ok {
t.Errorf("Returned new data instance 1 is not roi.Data\n")
}
if roi1.DataName() != "myroi" {
t.Errorf("New roi data instance name set incorrectly: %q != %q\n",
roi1.DataName(), "myroi")
}
config.Set("BlockSize", "15,16,17")
dataservice2, err := datastore.NewData(uuid, roitype, "myroi2", config)
if err != nil {
t.Errorf("Error creating new roi instance: %v\n", err)
}
roi2, ok := dataservice2.(*Data)
if !ok {
t.Errorf("Returned new data instance 2 is not roi.Data\n")
}
roi2.MinZ = 13
roi2.MaxZ = 3098
oldData := *roi2
// Check instance IDs
if roi1.InstanceID() == roi2.InstanceID() {
t.Errorf("Instance IDs should be different: %d == %d\n",
roi1.InstanceID(), roi2.InstanceID())
}
// Restart test datastore and see if datasets are still there.
if err = datastore.SaveDataByUUID(uuid, dataservice1); err != nil {
t.Fatalf("Unable to save data1 during ROI persistence test: %v\n", err)
}
if err = datastore.SaveDataByUUID(uuid, dataservice2); err != nil {
t.Fatalf("Unable to save data2 during ROI persistence test: %v\n", err)
}
datastore.CloseReopenTest()
dataservice3, err := datastore.GetDataByUUID(uuid, "myroi2")
if err != nil {
t.Fatalf("Can't get first ROI instance from reloaded test db: %v\n", err)
}
roi2new, ok := dataservice3.(*Data)
if !ok {
t.Errorf("Returned new data instance 3 is not roi.Data\n")
}
if !oldData.Equals(roi2new) {
t.Errorf("Expected %v, got %v\n", oldData, *roi2new)
}
}
// switchboard for remote command execution
func handleCommand(cmd *datastore.Request) (reply *datastore.Response, err error) {
if cmd.Name() == "" {
err = fmt.Errorf("Server error: got empty command!")
return
}
reply = new(datastore.Response)
switch cmd.Name() {
case "help":
reply.Text = fmt.Sprintf(RPCHelpMessage, config.RPCAddress(), config.HTTPAddress())
case "shutdown":
dvid.Infof("DVID server halting due to 'shutdown' command.")
reply.Text = fmt.Sprintf("DVID server at %s is being shutdown...\n", config.RPCAddress())
// launch goroutine shutdown so we can concurrently return shutdown message to client.
go Shutdown()
case "types":
if len(cmd.Command) == 1 {
text := "\nData Types within this DVID Server\n"
text += "----------------------------------\n"
var mapTypes map[dvid.URLString]datastore.TypeService
if mapTypes, err = datastore.Types(); err != nil {
err = fmt.Errorf("Error trying to retrieve data types within this DVID server!")
return
}
for url, typeservice := range mapTypes {
text += fmt.Sprintf("%-20s %s\n", typeservice.GetTypeName(), url)
}
reply.Text = text
} else {
if len(cmd.Command) != 3 || cmd.Command[2] != "help" {
err = fmt.Errorf("Unknown types command: %q", cmd.Command)
return
}
var typename string
var typeservice datastore.TypeService
cmd.CommandArgs(1, &typename)
if typeservice, err = datastore.TypeServiceByName(dvid.TypeString(typename)); err != nil {
return
}
reply.Text = typeservice.Help()
}
case "repos":
var subcommand string
cmd.CommandArgs(1, &subcommand)
switch subcommand {
case "new":
var alias, description string
cmd.CommandArgs(2, &alias, &description)
config := cmd.Settings()
var uuidStr, passcode string
var found bool
if uuidStr, found, err = config.GetString("uuid"); err != nil {
return
}
var assign *dvid.UUID
if !found {
assign = nil
} else {
uuid := dvid.UUID(uuidStr)
assign = &uuid
}
if passcode, found, err = config.GetString("passcode"); err != nil {
return
}
var root dvid.UUID
root, err = datastore.NewRepo(alias, description, assign, passcode)
if err != nil {
return
}
if err = datastore.SetRepoAlias(root, alias); err != nil {
return
}
if err = datastore.SetRepoDescription(root, description); err != nil {
return
}
reply.Text = fmt.Sprintf("New repo %q created with head node %s\n", alias, root)
case "delete":
var uuidStr, passcode string
cmd.CommandArgs(2, &uuidStr, &passcode)
var uuid dvid.UUID
if uuid, _, err = datastore.MatchingUUID(uuidStr); err != nil {
return
}
if err = datastore.DeleteRepo(uuid, passcode); err != nil {
return
}
reply.Text = fmt.Sprintf("Started deletion of repo %s.\n", uuid)
default:
err = fmt.Errorf("Unknown repos command: %q", subcommand)
return
}
case "repo":
var uuidStr, subcommand string
cmd.CommandArgs(1, &uuidStr, &subcommand)
var uuid dvid.UUID
if uuid, _, err = datastore.MatchingUUID(uuidStr); err != nil {
return
}
switch subcommand {
case "new":
var typename, dataname string
cmd.CommandArgs(3, &typename, &dataname)
// Get TypeService
var typeservice datastore.TypeService
if typeservice, err = datastore.TypeServiceByName(dvid.TypeString(typename)); err != nil {
return
}
// Create new data
config := cmd.Settings()
if _, err = datastore.NewData(uuid, typeservice, dvid.InstanceName(dataname), config); err != nil {
return
}
reply.Text = fmt.Sprintf("Data %q [%s] added to node %s\n", dataname, typename, uuid)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "rename":
var name1, name2, passcode string
cmd.CommandArgs(3, &name1, &name2, &passcode)
oldname := dvid.InstanceName(name1)
newname := dvid.InstanceName(name2)
// Make sure this instance exists.
if _, err = datastore.GetDataByUUIDName(uuid, oldname); err != nil {
err = fmt.Errorf("Error trying to rename %q for UUID %s: %v", oldname, uuid, err)
return
}
// Do the rename.
if err = datastore.RenameData(uuid, oldname, newname, passcode); err != nil {
err = fmt.Errorf("Error renaming data instance %q to %q: %v", oldname, newname, err)
return
}
reply.Text = fmt.Sprintf("Renamed data instance %q to %q from DAG subgraph @ root %s\n", oldname, newname, uuid)
case "branch":
cmd.CommandArgs(3, &uuidStr)
var assign *dvid.UUID
if uuidStr == "" {
assign = nil
} else {
u := dvid.UUID(uuidStr)
assign = &u
}
var child dvid.UUID
if child, err = datastore.NewVersion(uuid, fmt.Sprintf("branch of %s", uuid), assign); err != nil {
return
}
reply.Text = fmt.Sprintf("Branch %s added to node %s\n", child, uuid)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "merge":
uuids := cmd.CommandArgs(2)
parents := make([]dvid.UUID, len(uuids)+1)
parents[0] = dvid.UUID(uuid)
i := 1
for uuid := range uuids {
parents[i] = dvid.UUID(uuid)
i++
}
var child dvid.UUID
child, err = datastore.Merge(parents, fmt.Sprintf("merge of parents %v", parents), datastore.MergeConflictFree)
if err != nil {
return
}
reply.Text = fmt.Sprintf("Parents %v merged into node %s\n", parents, child)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "migrate":
var source, oldStoreName string
cmd.CommandArgs(3, &source, &oldStoreName)
var store dvid.Store
store, err = storage.GetStoreByAlias(storage.Alias(oldStoreName))
if err != nil {
return
}
config := cmd.Settings()
go func() {
if err = datastore.MigrateInstance(uuid, dvid.InstanceName(source), store, config); err != nil {
dvid.Errorf("migrate error: %v\n", err)
}
}()
reply.Text = fmt.Sprintf("Started migration of uuid %s data instance %q from old store %q...\n", uuid, source, oldStoreName)
case "copy":
var source, target string
cmd.CommandArgs(3, &source, &target)
config := cmd.Settings()
go func() {
if err = datastore.CopyInstance(uuid, dvid.InstanceName(source), dvid.InstanceName(target), config); err != nil {
dvid.Errorf("copy error: %v\n", err)
}
}()
reply.Text = fmt.Sprintf("Started copy of uuid %s data instance %q to %q...\n", uuid, source, target)
case "push":
var target string
cmd.CommandArgs(3, &target)
config := cmd.Settings()
go func() {
if err = datastore.PushRepo(uuid, target, config); err != nil {
dvid.Errorf("push error: %v\n", err)
}
}()
reply.Text = fmt.Sprintf("Started push of repo %s to %q...\n", uuid, target)
/*
case "pull":
var target string
cmd.CommandArgs(3, &target)
config := cmd.Settings()
if err = datastore.Pull(uuid, target, config); err != nil {
return
}
reply.Text = fmt.Sprintf("Repo %s pulled from %q\n", uuid, target)
*/
case "delete":
var dataname, passcode string
cmd.CommandArgs(3, &dataname, &passcode)
// Make sure this instance exists.
if _, err = datastore.GetDataByUUIDName(uuid, dvid.InstanceName(dataname)); err != nil {
err = fmt.Errorf("Error trying to delete %q for UUID %s: %v", dataname, uuid, err)
return
}
// Do the deletion. Under hood, modifies metadata immediately and launches async k/v deletion.
if err = datastore.DeleteDataByName(uuid, dvid.InstanceName(dataname), passcode); err != nil {
err = fmt.Errorf("Error deleting data instance %q: %v", dataname, err)
return
}
reply.Text = fmt.Sprintf("Started deletion of data instance %q from repo with root %s\n", dataname, uuid)
default:
err = fmt.Errorf("Unknown command: %q", cmd)
return
}
case "node":
var uuidStr, descriptor string
cmd.CommandArgs(1, &uuidStr, &descriptor)
var uuid dvid.UUID
if uuid, _, err = datastore.MatchingUUID(uuidStr); err != nil {
return
}
// Get the DataService
dataname := dvid.InstanceName(descriptor)
var subcommand string
cmd.CommandArgs(3, &subcommand)
var dataservice datastore.DataService
if dataservice, err = datastore.GetDataByUUIDName(uuid, dataname); err != nil {
return
}
if subcommand == "help" {
reply.Text = dataservice.Help()
return
}
err = dataservice.DoRPC(*cmd, reply)
return
default:
// Check to see if it's a name of a compiled data type, in which case we refer it to the data type.
types := datastore.CompiledTypes()
for name, typeservice := range types {
if name == dvid.TypeString(cmd.Argument(0)) {
err = typeservice.Do(*cmd, reply)
return
}
}
err = fmt.Errorf("Unknown command: '%s'", *cmd)
}
return
}
