// Format returns formated (wrapped with fixed length of) sequence record
func (record *Record) Format(width int) []byte {
if len(record.Seq.Qual) > 0 {
return append(append(append(append([]byte(fmt.Sprintf("@%s\n", record.Name)),
byteutil.WrapByteSlice(record.Seq.Seq, width)...), []byte("\n+\n")...),
byteutil.WrapByteSlice(record.Seq.Qual, width)...), []byte("\n")...)
}
return append(append([]byte(fmt.Sprintf(">%s\n", record.Name)),
byteutil.WrapByteSlice(record.Seq.Seq, width)...), []byte("\n")...)
}
// FormatToWriter formats and directly writes to writer
func (record *Record) FormatToWriter(outfh *xopen.Writer, width int) {
if len(record.Seq.Qual) > 0 {
outfh.Write([]byte(fmt.Sprintf("@%s\n", record.Name)))
if len(record.Seq.Seq) <= pageSize {
outfh.Write(byteutil.WrapByteSlice(record.Seq.Seq, width))
} else {
text, b := bufferedByteSliceWrapper.Wrap(record.Seq.Seq, width)
outfh.Write(text)
outfh.Flush()
bufferedByteSliceWrapper.Recycle(b)
}
outfh.Write([]byte("\n+\n"))
if len(record.Seq.Qual) <= pageSize {
outfh.Write(byteutil.WrapByteSlice(record.Seq.Qual, width))
} else {
text, b := bufferedByteSliceWrapper.Wrap(record.Seq.Qual, width)
outfh.Write(text)
outfh.Flush()
bufferedByteSliceWrapper.Recycle(b)
}
outfh.Write([]byte("\n"))
return
}
outfh.Write([]byte(fmt.Sprintf(">%s\n", record.Name)))
if len(record.Seq.Seq) <= pageSize {
outfh.Write(byteutil.WrapByteSlice(record.Seq.Seq, width))
} else {
text, b := bufferedByteSliceWrapper.Wrap(record.Seq.Seq, width)
outfh.Write(text)
outfh.Flush()
bufferedByteSliceWrapper.Recycle(b)
}
outfh.Write([]byte("\n"))
}
// FormatSeq wrap seq
func (seq *Seq) FormatSeq(width int) []byte {
return byteutil.WrapByteSlice(seq.Seq, width)
}