func main() {
optaln := new(algorithms.OptAli)
log.Println(optaln.CalculateDistance("SimpleTest", "SimplTest"))
optaln = new(algorithms.OptAli)
log.Println(optaln.CalculateDistance("ATCGT", "TGGTG"))
optaln = new(algorithms.OptAli)
log.Println(optaln.CalculateDistance("GACTTAC", "CGTGAATTCAT"))
damleu := new(algorithms.DamLev)
log.Println(damleu.CalculateDistanceWithAlphabet("SimpleTest", "SimplTest", 20))
damleu = new(algorithms.DamLev)
log.Println(damleu.CalculateDistanceWithAlphabet("ATCGT", "TGGTG", 20))
//gap, missmatchscore, exactscore
neewun := algorithms.NewNeeWun(-2, 1, 1)
log.Println(neewun.CalculateDistance("ATCGT", "TGGTG"))
smiwat := algorithms.NewSmiWat(-4, 3, 5)
log.Println(smiwat.CalculateDistance("GACTTAC", "CGTGAATTCAT"))
}
func TestCalculateDistanceSmiWat(t *testing.T) {
smiwat := algorithms.NewSmiWat(-4, 3, 5)
result := smiwat.CalculateDistance("GACTTAC", "CGTGAATTCAT")
assert.Equal(t, 6, result, "Calculation for Smith Waterman is not correct!")
}