func load(fn string) *triangle {
t := new(triangle)
fd, buff := files.Xopen(fn)
for line := range files.IterLines(buff) {
numbers := []int{}
for _, n := range strings.Split(line, " ") {
if i, err := strconv.Atoi(n); err == nil {
numbers = append(numbers, i)
} else {
log.Fatal("Problems parsing line.", err)
}
}
t.data = append(t.data, numbers)
}
fd.Close()
return t
}
func loadData(fn string) []byte {
f, r := files.Xopen(fn)
defer f.Close()
var lineData []byte
buff := make([]byte, 100000)
var err error
n := 1
for n != 0 {
if n, err = r.Read(buff); err == nil {
lineData = append(lineData, buff...)
} else {
if err == io.EOF {
break
} else {
log.Fatal("Problems reading file", err)
}
}
}
return lineData
}
func main() {
o := parseArgs()
// If the user wants us to generate a random kindship file, let's do it
// and we are done
if *o.nRandSamples > 0 {
fmt.Print(urlness.GenRandomKindShip(*o.nRandSamples))
return
}
inputData := new(urlness.Options)
// link between file paths and their locations in the datastructure
// that we will pass to the urlness package (inputData)
fNamesToFiles := map[*string]*io.Reader{
o.ksFname: &inputData.KS,
o.sexFname: &inputData.Sex,
o.pheFname: &inputData.Phe,
o.forceFname: &inputData.Force,
}
// Open the files and set the readers for them in inputData
for path, reader := range fNamesToFiles {
if *path != "" {
file, r := files.Xopen(*path)
*reader = r
defer file.Close()
}
}
// We know the Phi param has to be there for sure
inputData.PhiFilter = *o.phiFilter
// CPU Profiling
// http://blog.golang.org/2011/06/profiling-go-programs.html
if *o.cpuProfile != "" {
f, err := os.Create(*o.cpuProfile)
if err != nil {
log.Fatal(err)
}
pprof.StartCPUProfile(f)
defer pprof.StopCPUProfile()
}
// Run the appropiate routine
if *o.optimal {
fmt.Println(urlness.ComputeOptimal(*inputData))
} else {
m, l := urlness.Compute(*inputData) // matrix and list of unrelated samples
fmt.Println(m)
if *o.phiFilter != 0 {
fmt.Fprintln(os.Stderr, l)
}
}
// Mem profile
// https://groups.google.com/forum/#!msg/golang-nuts/Nnp9HhLaJjA/y0yXlIDty0kJ
if *o.memProfile != "" {
f, err := os.Create(*o.memProfile)
if err != nil {
log.Fatal(err)
}
pprof.WriteHeapProfile(f)
defer f.Close()
}
}
