func runRefTest(A *matrix.FloatMatrix, ntest, LB int) time.Duration {
var mintime time.Duration
N := A.Rows()
ipiv := make([]int32, N, N)
lopt := linalg.OptLower
if testUpper {
lopt = linalg.OptUpper
}
fnc := func() {
ERRlapack = lapack.Sytrf(A, ipiv, lopt)
}
A0 := A.Copy()
for n := 0; n < ntest; n++ {
if n > 0 {
// restore original A
A0.CopyTo(A)
}
mperf.FlushCache()
time0 := mperf.Timeit(fnc)
if n == 0 || time0 < mintime {
mintime = time0
}
}
return mintime
}
// single invocation for matops and lapack functions
func runCheck(A *matrix.FloatMatrix, LB int) (bool, time.Duration, time.Duration) {
var flags matops.Flags
N := A.Rows()
ipiv := make([]int, N, N)
ipiv0 := make([]int32, N, N)
flags = matops.LOWER
lopt := linalg.OptLower
if testUpper {
flags = matops.UPPER
lopt = linalg.OptUpper
}
W := matrix.FloatZeros(A.Rows(), LB+2)
fnc := func() {
_, ERRmatops = matops.DecomposeBK(A, W, ipiv, flags, LB)
}
if verbose && N < 10 {
fmt.Fprintf(os.Stderr, "A start:\n%v\n", A)
}
A0 := A.Copy()
mperf.FlushCache()
time0 := mperf.Timeit(fnc)
if verbose && N < 10 {
fmt.Fprintf(os.Stderr, "ipiv:%v\n", ipiv)
fmt.Fprintf(os.Stderr, "A end:\n%v\n", A)
}
fn2 := func() {
ERRlapack = lapack.Sytrf(A0, ipiv0, lopt)
}
if verbose && N < 10 {
fmt.Fprintf(os.Stderr, "A0 start:\n%v\n", A0)
}
mperf.FlushCache()
time2 := mperf.Timeit(fn2)
if verbose && N < 10 {
fmt.Fprintf(os.Stderr, "ipiv0:%v\n", ipiv0)
fmt.Fprintf(os.Stderr, "A0 end:\n%v\n", A0)
}
// now A == A0 && ipiv == ipiv0
ok := A.AllClose(A0)
okip := checkIPIV(ipiv, ipiv0)
if !ok || !okip {
// save result to globals
Rlapack = A0
Rmatops = A
IPIVlapack = ipiv0
IPIVmatops = ipiv
}
return ok && okip, time0, time2
}
func _TestBKpivot1n2(t *testing.T) {
Ldata := [][]float64{
[]float64{1.0, 0.0, 0.0, 0.0, 0.0, 0.0, 0.0},
[]float64{1.0, 2.0, 0.0, 0.0, 0.0, 0.0, 0.0},
[]float64{1.0, 2.0, 3.0, 0.0, 0.0, 0.0, 0.0},
[]float64{1.0, 2.0, 3.0, 4.0, 0.0, 0.0, 0.0},
[]float64{1.0, 5.0, 3.0, 4.0, 5.0, 0.0, 0.0},
[]float64{1.0, 2.0, 3.0, 7.0, 5.0, 6.0, 0.0},
[]float64{1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0}}
Bdata := [][]float64{
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0}}
A := matrix.FloatMatrixFromTable(Ldata, matrix.RowOrder)
X := matrix.FloatMatrixFromTable(Bdata, matrix.RowOrder)
N := A.Rows()
B := matrix.FloatZeros(N, 2)
MultSym(B, A, X, 1.0, 0.0, LOWER|LEFT)
t.Logf("initial B:\n%v\n", B)
//N := 8
//A := matrix.FloatUniformSymmetric(N)
nb := 0
W := matrix.FloatWithValue(A.Rows(), 5, 0.0)
ipiv := make([]int, N, N)
L, _ := DecomposeBK(A.Copy(), W, ipiv, LOWER, nb)
t.Logf("ipiv: %v\n", ipiv)
t.Logf("L:\n%v\n", L)
ipiv0 := make([]int, N, N)
nb = 4
L0, _ := DecomposeBK(A.Copy(), W, ipiv0, LOWER, nb)
t.Logf("ipiv0: %v\n", ipiv0)
t.Logf("L0:\n%v\n", L0)
B0 := B.Copy()
SolveBK(B0, L0, ipiv0, LOWER)
t.Logf("B0:\n%v\n", B0)
ipiv2 := make([]int32, N, N)
lapack.Sytrf(A, ipiv2, linalg.OptLower)
t.Logf("ipiv2: %v\n", ipiv2)
t.Logf("lapack A:\n%v\n", A)
lapack.Sytrs(A, B, ipiv2, linalg.OptLower)
t.Logf("lapack B:\n%v\n", B)
t.Logf("B == B0: %v\n", B.AllClose(B0))
}
func _TestBK2(t *testing.T) {
Bdata := [][]float64{
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0},
[]float64{10.0, 20.0}}
N := 7
A0 := matrix.FloatNormal(N, N)
A := matrix.FloatZeros(N, N)
// A is symmetric, posivite definite
Mult(A, A0, A0, 1.0, 1.0, TRANSB)
X := matrix.FloatMatrixFromTable(Bdata, matrix.RowOrder)
B := matrix.FloatZeros(N, 2)
MultSym(B, A, X, 1.0, 0.0, LOWER|LEFT)
t.Logf("initial B:\n%v\n", B)
nb := 0
W := matrix.FloatWithValue(A.Rows(), 5, 1.0)
A.SetAt(4, 1, A.GetAt(4, 1)+1.0)
A.SetAt(1, 4, A.GetAt(4, 1))
ipiv := make([]int, N, N)
L, _ := DecomposeBK(A.Copy(), W, ipiv, LOWER, nb)
t.Logf("ipiv: %v\n", ipiv)
t.Logf("L:\n%v\n", L)
ipiv0 := make([]int, N, N)
nb = 4
L0, _ := DecomposeBK(A.Copy(), W, ipiv0, LOWER, nb)
t.Logf("ipiv: %v\n", ipiv0)
t.Logf("L:\n%v\n", L0)
B0 := B.Copy()
SolveBK(B0, L0, ipiv0, LOWER)
t.Logf("B0:\n%v\n", B0)
ipiv2 := make([]int32, N, N)
lapack.Sytrf(A, ipiv2, linalg.OptLower)
t.Logf("ipiv2: %v\n", ipiv2)
t.Logf("lapack A:\n%v\n", A)
lapack.Sytrs(A, B, ipiv2, linalg.OptLower)
t.Logf("lapack B:\n%v\n", B)
t.Logf("B == B0: %v\n", B.AllClose(B0))
}
func _TestBKSolve(t *testing.T) {
Ldata := [][]float64{
[]float64{1.0, 2.0, 3.0, 4.0},
[]float64{2.0, 2.0, 3.0, 4.0},
[]float64{3.0, 3.0, 3.0, 4.0},
[]float64{4.0, 4.0, 4.0, 4.0}}
Xdata := [][]float64{
[]float64{1.0, 2.0},
[]float64{1.0, 2.0},
[]float64{1.0, 2.0},
[]float64{1.0, 2.0}}
A := matrix.FloatMatrixFromTable(Ldata, matrix.RowOrder)
X := matrix.FloatMatrixFromTable(Xdata, matrix.RowOrder)
N := A.Rows()
B := matrix.FloatZeros(N, 2)
Mult(B, A, X, 1.0, 0.0, NOTRANS)
S := matrix.FloatZeros(N, 2)
MultSym(S, A, X, 1.0, 0.0, LOWER|LEFT)
t.Logf("B:\n%v\n", B)
t.Logf("S:\n%v\n", S)
//N := 8
//A := matrix.FloatUniformSymmetric(N)
nb := 0
W := matrix.FloatWithValue(A.Rows(), 5, 0.0)
ipiv := make([]int, N, N)
L, _ := DecomposeBK(A.Copy(), W, ipiv, LOWER, nb)
t.Logf("ipiv: %v\n", ipiv)
t.Logf("L:\n%v\n", L)
B0 := B.Copy()
SolveBK(B0, L, ipiv, LOWER)
t.Logf("B0:\n%v\n", B0)
ipiv2 := make([]int32, N, N)
lapack.Sytrf(A, ipiv2, linalg.OptLower)
t.Logf("ipiv2: %v\n", ipiv2)
t.Logf("lapack A:\n%v\n", A)
lapack.Sytrs(A, B, ipiv2, linalg.OptLower)
t.Logf("lapack B:\n%v\n", B)
}
// Solution of KKT equations by a dense LDL factorization of the
// 3 x 3 system.
//
// Returns a function that (1) computes the LDL factorization of
//
// [ H A' GG'*W^{-1} ]
// [ A 0 0 ],
// [ W^{-T}*GG 0 -I ]
//
// given H, Df, W, where GG = [Df; G], and (2) returns a function for
// solving
//
// [ H A' GG' ] [ ux ] [ bx ]
// [ A 0 0 ] * [ uy ] = [ by ].
// [ GG 0 -W'*W ] [ uz ] [ bz ]
//
// H is n x n, A is p x n, Df is mnl x n, G is N x n where
// N = dims['l'] + sum(dims['q']) + sum( k**2 for k in dims['s'] ).
//
func kktLdl(G *matrix.FloatMatrix, dims *sets.DimensionSet, A *matrix.FloatMatrix, mnl int) (kktFactor, error) {
p, n := A.Size()
ldK := n + p + mnl + dims.At("l")[0] + dims.Sum("q") + dims.SumPacked("s")
K := matrix.FloatZeros(ldK, ldK)
ipiv := make([]int32, ldK)
u := matrix.FloatZeros(ldK, 1)
g := matrix.FloatZeros(mnl+G.Rows(), 1)
//checkpnt.AddMatrixVar("u", u)
//checkpnt.AddMatrixVar("K", K)
factor := func(W *sets.FloatMatrixSet, H, Df *matrix.FloatMatrix) (KKTFunc, error) {
var err error = nil
// Zero K for each call.
blas.ScalFloat(K, 0.0)
if H != nil {
K.SetSubMatrix(0, 0, H)
}
K.SetSubMatrix(n, 0, A)
for k := 0; k < n; k++ {
// g is (mnl + G.Rows(), 1) matrix, Df is (mnl, n), G is (N, n)
if mnl > 0 {
// set values g[0:mnl] = Df[,k]
g.SetIndexesFromArray(Df.GetColumnArray(k, nil), matrix.MakeIndexSet(0, mnl, 1)...)
}
// set values g[mnl:] = G[,k]
g.SetIndexesFromArray(G.GetColumnArray(k, nil), matrix.MakeIndexSet(mnl, mnl+g.Rows(), 1)...)
scale(g, W, true, true)
if err != nil {
//fmt.Printf("scale error: %s\n", err)
}
pack(g, K, dims, &la.IOpt{"mnl", mnl}, &la.IOpt{"offsety", k*ldK + n + p})
}
setDiagonal(K, n+p, n+n, ldK, ldK, -1.0)
err = lapack.Sytrf(K, ipiv)
if err != nil {
return nil, err
}
solve := func(x, y, z *matrix.FloatMatrix) (err error) {
// Solve
//
// [ H A' GG'*W^{-1} ] [ ux ] [ bx ]
// [ A 0 0 ] * [ uy [ = [ by ]
// [ W^{-T}*GG 0 -I ] [ W*uz ] [ W^{-T}*bz ]
//
// and return ux, uy, W*uz.
//
// On entry, x, y, z contain bx, by, bz. On exit, they contain
// the solution ux, uy, W*uz.
err = nil
blas.Copy(x, u)
blas.Copy(y, u, &la.IOpt{"offsety", n})
err = scale(z, W, true, true)
if err != nil {
return
}
err = pack(z, u, dims, &la.IOpt{"mnl", mnl}, &la.IOpt{"offsety", n + p})
if err != nil {
return
}
err = lapack.Sytrs(K, u, ipiv)
if err != nil {
return
}
blas.Copy(u, x, &la.IOpt{"n", n})
blas.Copy(u, y, &la.IOpt{"n", p}, &la.IOpt{"offsetx", n})
err = unpack(u, z, dims, &la.IOpt{"mnl", mnl}, &la.IOpt{"offsetx", n + p})
return
}
return solve, err
}
return factor, nil
}