コード例 #1
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// Put key-value pairs.  Note that it could be more efficient to use the Batcher
// interface so you don't have to create and keep a slice of KeyValue.  Some
// databases like leveldb will copy on batch put anyway.
func (db *BigTable) PutRange(ctx storage.Context, TKeyValue []storage.TKeyValue) error {
	if db == nil {
		return fmt.Errorf("Can't call PutRange() on nil BigTable")
	}
	if ctx == nil {
		return fmt.Errorf("Received nil context in PutRange()")
	}

	for _, tkeyvalue := range TKeyValue {

		unvKey, verKey, err := ctx.SplitKey(tkeyvalue.K)
		if err != nil {
			dvid.Errorf("Error in PutRange(): %v\n", err)
		}

		mut := api.NewMutation()

		mut.Set(familyName, encodeKey(verKey), 0, tkeyvalue.V)
		err = tbl.Apply(db.ctx, encodeKey(unvKey), mut)
		if err != nil {
			dvid.Errorf("Failed to Put value in PutRange()")
		}
	}

	return nil
}
コード例 #2
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// Get returns a value given a key.
func (db *BigTable) Get(ctx storage.Context, tk storage.TKey) ([]byte, error) {
	if db == nil {
		return nil, fmt.Errorf("Can't call Get() on nil BigTable")
	}
	if ctx == nil {
		return nil, fmt.Errorf("Received nil context in Get()")
	}

	unvKey, verKey, err := ctx.SplitKey(tk)
	if err != nil {
		dvid.Errorf("Error in Get(): %v\n", err)
	}

	r, err := tbl.ReadRow(db.ctx, encodeKey(unvKey))

	//A missing row will return a zero-length map and a nil error
	if len(r) == 0 {
		return nil, err
	}

	if err != nil {
		return nil, err
	}

	value, err := getValue(r, verKey)
	if err != nil {
		return nil, err
	}

	return value, nil
}
コード例 #3
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// KeysInRange returns a range of type-specific key components spanning (TkBeg, TkEnd).
func (db *BigTable) KeysInRange(ctx storage.Context, TkBeg, TkEnd storage.TKey) ([]storage.TKey, error) {
	if db == nil {
		return nil, fmt.Errorf("Can't call KeysInRange() on nil BigTable")
	}
	if ctx == nil {
		return nil, fmt.Errorf("Received nil context in KeysInRange()")
	}

	tKeys := make([]storage.TKey, 0)

	unvKeyBeg, _, err := ctx.SplitKey(TkBeg)
	if err != nil {
		dvid.Errorf("Error in KeysInRange(): %v\n", err)
	}

	unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
	if err != nil {
		dvid.Errorf("Error in KeysInRange(): %v\n", err)
	}

	rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))

	err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {

		if len(r[familyName]) == 0 {
			dvid.Errorf("Error in KeysInRange(): row has no columns")
			return false
		}

		unvKeyRow, err := decodeKey(r.Key())
		if err != nil {
			dvid.Errorf("Error in KeysInRange(): %v\n", err)
			return false
		}

		verKeyRow, err := decodeKey(r[familyName][0].Column)
		if err != nil {
			dvid.Errorf("Error in KeysInRange(): %v\n", err)
			return false
		}

		fullKey := storage.MergeKey(unvKeyRow, verKeyRow)
		tkey, err := storage.TKeyFromKey(fullKey)
		if err != nil {
			dvid.Errorf("Error in KeysInRange(): %v\n", err)
			return false
		}

		tKeys = append(tKeys, tkey)

		return true // keep going
	}, api.RowFilter(api.StripValueFilter()))

	return tKeys, err
}
コード例 #4
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// GetRange returns a range of values spanning (TkBeg, kEnd) keys.
func (db *BigTable) GetRange(ctx storage.Context, TkBeg, TkEnd storage.TKey) ([]*storage.TKeyValue, error) {
	if db == nil {
		return nil, fmt.Errorf("Can't call GetRange() on nil BigTable")
	}
	if ctx == nil {
		return nil, fmt.Errorf("Received nil context in GetRange()")
	}

	unvKeyBeg, _, err := ctx.SplitKey(TkBeg)
	if err != nil {
		dvid.Errorf("Error in GetRange(): %v\n", err)
	}
	unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
	if err != nil {
		dvid.Errorf("Error in GetRange(): %v\n", err)
	}

	tKeyValues := make([]*storage.TKeyValue, 0)

	rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))
	err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {

		unvKeyRow, err := decodeKey(r.Key())
		if err != nil {
			dvid.Errorf("Error in GetRange() decodeKey(r.Key()): %v\n", err)
			return false
		}

		// dvid.Infof("GetRange() with row key= %v", r.Key())
		for _, readItem := range r[familyName] {

			verKey, err := decodeKey(readItem.Column)
			if err != nil {
				dvid.Errorf("Error in GetRange() decodeKey(readItem.Column): %v\n", err)
				return false
			}

			fullKey := storage.MergeKey(unvKeyRow, verKey)
			// dvid.Infof("colum key= %v , timestamp = %v", verKey, readItem.Timestamp)
			tkey, err := storage.TKeyFromKey(fullKey)
			if err != nil {
				dvid.Errorf("Error in GetRange() storage.TKeyFromKey(fullKey): %v\n", err)
				return false
			}

			kv := storage.TKeyValue{tkey, readItem.Value}
			tKeyValues = append(tKeyValues, &kv)
		}

		return true // keep going
	})

	return tKeyValues, err
}
コード例 #5
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// Delete deletes a key-value pair so that subsequent Get on the key returns nil.
func (db *BigTable) Delete(ctx storage.Context, tkey storage.TKey) error {
	if db == nil {
		return fmt.Errorf("Can't call Delete() on nil BigTable")
	}
	if ctx == nil {
		return fmt.Errorf("Received nil context in Delete()")
	}

	unvKey, verKey, err := ctx.SplitKey(tkey)
	if err != nil {
		dvid.Errorf("Error in Delete(): %v\n", err)
	}

	r, err := tbl.ReadRow(db.ctx, encodeKey(unvKey), api.RowFilter(api.StripValueFilter()))

	//A missing row will return a zero-length map and a nil error
	if len(r) == 0 {
		return fmt.Errorf("Error in Delete(): This unvKey doesn't exists")
	}

	if err != nil {
		return err
	}
	if len(r[familyName]) == 0 {
		return fmt.Errorf("Error in Delete(): This row is empty")
	}
	_, err = getValue(r, verKey)
	if err != nil {
		return fmt.Errorf("Error in Delete(): The version to be deleted doesn't exist")
	}

	mut := api.NewMutation()

	//There is only one version left, and is the one we are trying to delete\
	//remove the whole row
	if len(r[familyName]) == 1 {
		mut.DeleteRow()
	} else {
		mut.DeleteCellsInColumn(familyName, encodeKey(verKey))
	}

	err = tbl.Apply(db.ctx, encodeKey(unvKey), mut)
	if err != nil {
		return fmt.Errorf("Error in Delete(): %v\n", err)
	}

	return err
}
コード例 #6
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// SendKeysInRange sends a range of full keys down a key channel.
func (db *BigTable) SendKeysInRange(ctx storage.Context, TkBeg, TkEnd storage.TKey, ch storage.KeyChan) error {
	if db == nil {
		return fmt.Errorf("Can't call SendKeysInRange() on nil BigTable")
	}
	if ctx == nil {
		return fmt.Errorf("Received nil context in SendKeysInRange()")
	}

	unvKeyBeg, _, err := ctx.SplitKey(TkBeg)
	if err != nil {
		dvid.Errorf("Error in SendKeysInRange(): %v\n", err)
	}

	unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
	if err != nil {
		dvid.Errorf("Error in SendKeysInRange(): %v\n", err)
	}

	rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))

	err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {

		unvKeyRow, err := decodeKey(r.Key())
		if err != nil {
			dvid.Errorf("Error in SendKeysInRange(): %v\n", err)
			return false
		}

		//I need the versioned key to merged it with the unversioned
		// and send it throu the channel
		for _, readItem := range r[familyName] {

			verKey, err := decodeKey(readItem.Column)
			if err != nil {
				dvid.Errorf("Error in SendKeysInRange(): %v\n", err)
				return false
			}

			fullKey := storage.MergeKey(unvKeyRow, verKey)

			ch <- fullKey
		}

		return true // keep going
	}, api.RowFilter(api.StripValueFilter()))

	return err
}
コード例 #7
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// DeleteRange removes all key-value pairs with keys in the given range.
// For all versions
func (db *BigTable) DeleteRange(ctx storage.Context, TkBeg, TkEnd storage.TKey) error {
	if db == nil {
		return fmt.Errorf("Can't call DeleteRange() on nil BigTable")
	}
	if ctx == nil {
		return fmt.Errorf("Received nil context in DeleteRange()")
	}

	unvKeyBeg, _, err := ctx.SplitKey(TkBeg)
	if err != nil {
		return fmt.Errorf("Error in DeleteRange(): %v\n", err)
	}
	unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
	if err != nil {
		return fmt.Errorf("Error in DeleteRange(): %v\n", err)
	}

	rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))

	err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {

		unvKeyRow, err := decodeKey(r.Key())
		if err != nil {
			dvid.Errorf("Error in DeleteRange(): %v\n", err)
			return false
		}

		mut := api.NewMutation()
		mut.DeleteRow()
		err = tbl.Apply(db.ctx, encodeKey(unvKeyRow), mut)
		if err != nil {
			dvid.Errorf("Failed to delete row in DeleteRange()")
		}

		return true // keep going
	}, api.RowFilter(api.StripValueFilter()))

	return err
}
コード例 #8
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// Put writes a value with given key in a possibly versioned context.
func (db *BigTable) Put(ctx storage.Context, tkey storage.TKey, value []byte) error {
	if db == nil {
		return fmt.Errorf("Can't call Put() on nil BigTable")
	}
	if ctx == nil {
		return fmt.Errorf("Received nil context in Put()")
	}

	unvKey, verKey, err := ctx.SplitKey(tkey)
	if err != nil {
		dvid.Errorf("Error in Put(): %v\n", err)
	}

	mut := api.NewMutation()

	// dvid.Infof("Putting value %s\n", string(value))
	mut.Set(familyName, encodeKey(verKey), 0, value)
	err = tbl.Apply(db.ctx, encodeKey(unvKey), mut)
	if err != nil {
		return fmt.Errorf("Error in Put(): %v\n", err)
	}

	return err
}
コード例 #9
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// DeleteAll removes all key-value pairs for the context.  If allVersions is true,
// then all versions of the data instance are deleted.
func (db *BigTable) DeleteAll(ctx storage.Context, allVersions bool) error {
	if db == nil {
		return fmt.Errorf("Can't call DeleteAll() on nil BigTable")
	}
	if ctx == nil {
		return fmt.Errorf("Received nil context in DeleteAll()")
	}

	//Row range corresponde to all keys corresponding to this data instace.
	min, max := ctx.KeyRange()
	rr := api.NewRange(encodeKey(min), encodeKey(max))

	err := tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {

		unvKeyRow, err := decodeKey(r.Key())
		if err != nil {
			dvid.Errorf("Error in DeleteAll(): %v\n", err)
			return false
		}

		if allVersions {

			mut := api.NewMutation()
			mut.DeleteRow()
			err := tbl.Apply(db.ctx, encodeKey(unvKeyRow), mut)
			if err != nil {
				dvid.Errorf("Failed to delete row")
			}
		} else {

			emptyTkey := make([]byte, 0)
			_, versionToDelete, err := ctx.SplitKey(emptyTkey)
			if err != nil {
				dvid.Errorf("Error in DeleteAll(): %v\n", err)
				return false
			}

			for _, readItem := range r[familyName] {

				verKey, err := decodeKey(readItem.Column)
				if err != nil {
					dvid.Errorf("Error in DeleteAll(): %v\n", err)
					return false
				}

				if bytes.Equal(verKey, versionToDelete) {
					mut := api.NewMutation()
					mut.DeleteCellsInColumn(familyName, encodeKey(verKey))
					err := tbl.Apply(db.ctx, encodeKey(unvKeyRow), mut)
					if err != nil {
						dvid.Errorf("Failed to DeleteCellsInColumn in DeleteAll()")
					}
					return true // One I found the version I don't have to keep serching for it.
				}
			}
		}

		return true // keep going
	}, api.RowFilter(api.StripValueFilter()))

	return err
}
コード例 #10
0
ファイル: bigtable.go プロジェクト: tartavull/dvid
// ProcessRange sends a range of type key-value pairs to type-specific chunk handlers,
// allowing chunk processing to be concurrent with key-value sequential reads.
// Since the chunks are typically sent during sequential read iteration, the
// receiving function can be organized as a pool of chunk handling goroutines.
// See datatype/imageblk.ProcessChunk() for an example.
func (db *BigTable) ProcessRange(ctx storage.Context, TkBeg, TkEnd storage.TKey, op *storage.ChunkOp, f storage.ChunkFunc) error {
	if db == nil {
		return fmt.Errorf("Can't call ProcessRange() on nil BigTable")
	}
	if ctx == nil {
		return fmt.Errorf("Received nil context in ProcessRange()")
	}

	unvKeyBeg, verKey, err := ctx.SplitKey(TkBeg)
	if err != nil {
		dvid.Errorf("Error in ProcessRange(): %v\n", err)
	}

	unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
	if err != nil {
		dvid.Errorf("Error in ProcessRange(): %v\n", err)
	}

	rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))
	err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {

		if len(r[familyName]) == 0 {
			dvid.Errorf("Error in KeysInRange(): row has no columns")
			return false
		}

		unvKeyRow, err := decodeKey(r.Key())
		if err != nil {
			dvid.Errorf("Error in ProcessRange(): %v\n", err)
			return false
		}

		verKeyRow, err := decodeKey(r[familyName][0].Column)
		if err != nil {
			dvid.Errorf("Error in ProcessRange(): %v\n", err)
			return false
		}

		fullKey := storage.MergeKey(unvKeyRow, verKeyRow)
		tkey, err := storage.TKeyFromKey(fullKey)
		if err != nil {
			dvid.Errorf("Error in ProcessRange(): %v\n", err)
			return false
		}

		if op.Wg != nil {
			op.Wg.Add(1)
		}
		value, err := getValue(r, verKey)
		if err != nil {
			dvid.Errorf("Error in ProcessRange(): %v\n", err)
			return false
		}

		tkv := storage.TKeyValue{tkey, value}
		chunk := &storage.Chunk{op, &tkv}
		if err := f(chunk); err != nil {
			dvid.Errorf("Error in ProcessRange(): %v\n", err)
			return false
		}

		return true // keep going
	})

	return err
}