// Put key-value pairs. Note that it could be more efficient to use the Batcher
// interface so you don't have to create and keep a slice of KeyValue. Some
// databases like leveldb will copy on batch put anyway.
func (db *BigTable) PutRange(ctx storage.Context, TKeyValue []storage.TKeyValue) error {
if db == nil {
return fmt.Errorf("Can't call PutRange() on nil BigTable")
}
if ctx == nil {
return fmt.Errorf("Received nil context in PutRange()")
}
for _, tkeyvalue := range TKeyValue {
unvKey, verKey, err := ctx.SplitKey(tkeyvalue.K)
if err != nil {
dvid.Errorf("Error in PutRange(): %v\n", err)
}
mut := api.NewMutation()
mut.Set(familyName, encodeKey(verKey), 0, tkeyvalue.V)
err = tbl.Apply(db.ctx, encodeKey(unvKey), mut)
if err != nil {
dvid.Errorf("Failed to Put value in PutRange()")
}
}
return nil
}
// Get returns a value given a key.
func (db *BigTable) Get(ctx storage.Context, tk storage.TKey) ([]byte, error) {
if db == nil {
return nil, fmt.Errorf("Can't call Get() on nil BigTable")
}
if ctx == nil {
return nil, fmt.Errorf("Received nil context in Get()")
}
unvKey, verKey, err := ctx.SplitKey(tk)
if err != nil {
dvid.Errorf("Error in Get(): %v\n", err)
}
r, err := tbl.ReadRow(db.ctx, encodeKey(unvKey))
//A missing row will return a zero-length map and a nil error
if len(r) == 0 {
return nil, err
}
if err != nil {
return nil, err
}
value, err := getValue(r, verKey)
if err != nil {
return nil, err
}
return value, nil
}
// KeysInRange returns a range of type-specific key components spanning (TkBeg, TkEnd).
func (db *BigTable) KeysInRange(ctx storage.Context, TkBeg, TkEnd storage.TKey) ([]storage.TKey, error) {
if db == nil {
return nil, fmt.Errorf("Can't call KeysInRange() on nil BigTable")
}
if ctx == nil {
return nil, fmt.Errorf("Received nil context in KeysInRange()")
}
tKeys := make([]storage.TKey, 0)
unvKeyBeg, _, err := ctx.SplitKey(TkBeg)
if err != nil {
dvid.Errorf("Error in KeysInRange(): %v\n", err)
}
unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
if err != nil {
dvid.Errorf("Error in KeysInRange(): %v\n", err)
}
rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))
err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {
if len(r[familyName]) == 0 {
dvid.Errorf("Error in KeysInRange(): row has no columns")
return false
}
unvKeyRow, err := decodeKey(r.Key())
if err != nil {
dvid.Errorf("Error in KeysInRange(): %v\n", err)
return false
}
verKeyRow, err := decodeKey(r[familyName][0].Column)
if err != nil {
dvid.Errorf("Error in KeysInRange(): %v\n", err)
return false
}
fullKey := storage.MergeKey(unvKeyRow, verKeyRow)
tkey, err := storage.TKeyFromKey(fullKey)
if err != nil {
dvid.Errorf("Error in KeysInRange(): %v\n", err)
return false
}
tKeys = append(tKeys, tkey)
return true // keep going
}, api.RowFilter(api.StripValueFilter()))
return tKeys, err
}
// GetRange returns a range of values spanning (TkBeg, kEnd) keys.
func (db *BigTable) GetRange(ctx storage.Context, TkBeg, TkEnd storage.TKey) ([]*storage.TKeyValue, error) {
if db == nil {
return nil, fmt.Errorf("Can't call GetRange() on nil BigTable")
}
if ctx == nil {
return nil, fmt.Errorf("Received nil context in GetRange()")
}
unvKeyBeg, _, err := ctx.SplitKey(TkBeg)
if err != nil {
dvid.Errorf("Error in GetRange(): %v\n", err)
}
unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
if err != nil {
dvid.Errorf("Error in GetRange(): %v\n", err)
}
tKeyValues := make([]*storage.TKeyValue, 0)
rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))
err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {
unvKeyRow, err := decodeKey(r.Key())
if err != nil {
dvid.Errorf("Error in GetRange() decodeKey(r.Key()): %v\n", err)
return false
}
// dvid.Infof("GetRange() with row key= %v", r.Key())
for _, readItem := range r[familyName] {
verKey, err := decodeKey(readItem.Column)
if err != nil {
dvid.Errorf("Error in GetRange() decodeKey(readItem.Column): %v\n", err)
return false
}
fullKey := storage.MergeKey(unvKeyRow, verKey)
// dvid.Infof("colum key= %v , timestamp = %v", verKey, readItem.Timestamp)
tkey, err := storage.TKeyFromKey(fullKey)
if err != nil {
dvid.Errorf("Error in GetRange() storage.TKeyFromKey(fullKey): %v\n", err)
return false
}
kv := storage.TKeyValue{tkey, readItem.Value}
tKeyValues = append(tKeyValues, &kv)
}
return true // keep going
})
return tKeyValues, err
}
// Delete deletes a key-value pair so that subsequent Get on the key returns nil.
func (db *BigTable) Delete(ctx storage.Context, tkey storage.TKey) error {
if db == nil {
return fmt.Errorf("Can't call Delete() on nil BigTable")
}
if ctx == nil {
return fmt.Errorf("Received nil context in Delete()")
}
unvKey, verKey, err := ctx.SplitKey(tkey)
if err != nil {
dvid.Errorf("Error in Delete(): %v\n", err)
}
r, err := tbl.ReadRow(db.ctx, encodeKey(unvKey), api.RowFilter(api.StripValueFilter()))
//A missing row will return a zero-length map and a nil error
if len(r) == 0 {
return fmt.Errorf("Error in Delete(): This unvKey doesn't exists")
}
if err != nil {
return err
}
if len(r[familyName]) == 0 {
return fmt.Errorf("Error in Delete(): This row is empty")
}
_, err = getValue(r, verKey)
if err != nil {
return fmt.Errorf("Error in Delete(): The version to be deleted doesn't exist")
}
mut := api.NewMutation()
//There is only one version left, and is the one we are trying to delete\
//remove the whole row
if len(r[familyName]) == 1 {
mut.DeleteRow()
} else {
mut.DeleteCellsInColumn(familyName, encodeKey(verKey))
}
err = tbl.Apply(db.ctx, encodeKey(unvKey), mut)
if err != nil {
return fmt.Errorf("Error in Delete(): %v\n", err)
}
return err
}
// SendKeysInRange sends a range of full keys down a key channel.
func (db *BigTable) SendKeysInRange(ctx storage.Context, TkBeg, TkEnd storage.TKey, ch storage.KeyChan) error {
if db == nil {
return fmt.Errorf("Can't call SendKeysInRange() on nil BigTable")
}
if ctx == nil {
return fmt.Errorf("Received nil context in SendKeysInRange()")
}
unvKeyBeg, _, err := ctx.SplitKey(TkBeg)
if err != nil {
dvid.Errorf("Error in SendKeysInRange(): %v\n", err)
}
unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
if err != nil {
dvid.Errorf("Error in SendKeysInRange(): %v\n", err)
}
rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))
err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {
unvKeyRow, err := decodeKey(r.Key())
if err != nil {
dvid.Errorf("Error in SendKeysInRange(): %v\n", err)
return false
}
//I need the versioned key to merged it with the unversioned
// and send it throu the channel
for _, readItem := range r[familyName] {
verKey, err := decodeKey(readItem.Column)
if err != nil {
dvid.Errorf("Error in SendKeysInRange(): %v\n", err)
return false
}
fullKey := storage.MergeKey(unvKeyRow, verKey)
ch <- fullKey
}
return true // keep going
}, api.RowFilter(api.StripValueFilter()))
return err
}
// DeleteRange removes all key-value pairs with keys in the given range.
// For all versions
func (db *BigTable) DeleteRange(ctx storage.Context, TkBeg, TkEnd storage.TKey) error {
if db == nil {
return fmt.Errorf("Can't call DeleteRange() on nil BigTable")
}
if ctx == nil {
return fmt.Errorf("Received nil context in DeleteRange()")
}
unvKeyBeg, _, err := ctx.SplitKey(TkBeg)
if err != nil {
return fmt.Errorf("Error in DeleteRange(): %v\n", err)
}
unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
if err != nil {
return fmt.Errorf("Error in DeleteRange(): %v\n", err)
}
rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))
err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {
unvKeyRow, err := decodeKey(r.Key())
if err != nil {
dvid.Errorf("Error in DeleteRange(): %v\n", err)
return false
}
mut := api.NewMutation()
mut.DeleteRow()
err = tbl.Apply(db.ctx, encodeKey(unvKeyRow), mut)
if err != nil {
dvid.Errorf("Failed to delete row in DeleteRange()")
}
return true // keep going
}, api.RowFilter(api.StripValueFilter()))
return err
}
// Put writes a value with given key in a possibly versioned context.
func (db *BigTable) Put(ctx storage.Context, tkey storage.TKey, value []byte) error {
if db == nil {
return fmt.Errorf("Can't call Put() on nil BigTable")
}
if ctx == nil {
return fmt.Errorf("Received nil context in Put()")
}
unvKey, verKey, err := ctx.SplitKey(tkey)
if err != nil {
dvid.Errorf("Error in Put(): %v\n", err)
}
mut := api.NewMutation()
// dvid.Infof("Putting value %s\n", string(value))
mut.Set(familyName, encodeKey(verKey), 0, value)
err = tbl.Apply(db.ctx, encodeKey(unvKey), mut)
if err != nil {
return fmt.Errorf("Error in Put(): %v\n", err)
}
return err
}
// DeleteAll removes all key-value pairs for the context. If allVersions is true,
// then all versions of the data instance are deleted.
func (db *BigTable) DeleteAll(ctx storage.Context, allVersions bool) error {
if db == nil {
return fmt.Errorf("Can't call DeleteAll() on nil BigTable")
}
if ctx == nil {
return fmt.Errorf("Received nil context in DeleteAll()")
}
//Row range corresponde to all keys corresponding to this data instace.
min, max := ctx.KeyRange()
rr := api.NewRange(encodeKey(min), encodeKey(max))
err := tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {
unvKeyRow, err := decodeKey(r.Key())
if err != nil {
dvid.Errorf("Error in DeleteAll(): %v\n", err)
return false
}
if allVersions {
mut := api.NewMutation()
mut.DeleteRow()
err := tbl.Apply(db.ctx, encodeKey(unvKeyRow), mut)
if err != nil {
dvid.Errorf("Failed to delete row")
}
} else {
emptyTkey := make([]byte, 0)
_, versionToDelete, err := ctx.SplitKey(emptyTkey)
if err != nil {
dvid.Errorf("Error in DeleteAll(): %v\n", err)
return false
}
for _, readItem := range r[familyName] {
verKey, err := decodeKey(readItem.Column)
if err != nil {
dvid.Errorf("Error in DeleteAll(): %v\n", err)
return false
}
if bytes.Equal(verKey, versionToDelete) {
mut := api.NewMutation()
mut.DeleteCellsInColumn(familyName, encodeKey(verKey))
err := tbl.Apply(db.ctx, encodeKey(unvKeyRow), mut)
if err != nil {
dvid.Errorf("Failed to DeleteCellsInColumn in DeleteAll()")
}
return true // One I found the version I don't have to keep serching for it.
}
}
}
return true // keep going
}, api.RowFilter(api.StripValueFilter()))
return err
}
// ProcessRange sends a range of type key-value pairs to type-specific chunk handlers,
// allowing chunk processing to be concurrent with key-value sequential reads.
// Since the chunks are typically sent during sequential read iteration, the
// receiving function can be organized as a pool of chunk handling goroutines.
// See datatype/imageblk.ProcessChunk() for an example.
func (db *BigTable) ProcessRange(ctx storage.Context, TkBeg, TkEnd storage.TKey, op *storage.ChunkOp, f storage.ChunkFunc) error {
if db == nil {
return fmt.Errorf("Can't call ProcessRange() on nil BigTable")
}
if ctx == nil {
return fmt.Errorf("Received nil context in ProcessRange()")
}
unvKeyBeg, verKey, err := ctx.SplitKey(TkBeg)
if err != nil {
dvid.Errorf("Error in ProcessRange(): %v\n", err)
}
unvKeyEnd, _, err := ctx.SplitKey(TkEnd)
if err != nil {
dvid.Errorf("Error in ProcessRange(): %v\n", err)
}
rr := api.NewRange(encodeKey(unvKeyBeg), encodeKey(unvKeyEnd))
err = tbl.ReadRows(db.ctx, rr, func(r api.Row) bool {
if len(r[familyName]) == 0 {
dvid.Errorf("Error in KeysInRange(): row has no columns")
return false
}
unvKeyRow, err := decodeKey(r.Key())
if err != nil {
dvid.Errorf("Error in ProcessRange(): %v\n", err)
return false
}
verKeyRow, err := decodeKey(r[familyName][0].Column)
if err != nil {
dvid.Errorf("Error in ProcessRange(): %v\n", err)
return false
}
fullKey := storage.MergeKey(unvKeyRow, verKeyRow)
tkey, err := storage.TKeyFromKey(fullKey)
if err != nil {
dvid.Errorf("Error in ProcessRange(): %v\n", err)
return false
}
if op.Wg != nil {
op.Wg.Add(1)
}
value, err := getValue(r, verKey)
if err != nil {
dvid.Errorf("Error in ProcessRange(): %v\n", err)
return false
}
tkv := storage.TKeyValue{tkey, value}
chunk := &storage.Chunk{op, &tkv}
if err := f(chunk); err != nil {
dvid.Errorf("Error in ProcessRange(): %v\n", err)
return false
}
return true // keep going
})
return err
}