// TaxInDB returns true if a taxon is in the database.
func taxInDB(c *cmdapp.Command, db jdh.DB, name, parent string, rank jdh.Rank, valid bool) *jdh.Taxon {
args := new(jdh.Values)
args.Add(jdh.TaxName, name)
if len(parent) != 0 {
args.Add(jdh.TaxParent, parent)
}
if rank != jdh.Unranked {
args.Add(jdh.TaxRank, rank.String())
}
l, err := db.List(jdh.Taxonomy, args)
if err != nil {
fmt.Fprintf(os.Stderr, "%s\n", c.ErrStr(err))
os.Exit(1)
}
defer l.Close()
for {
tax := &jdh.Taxon{}
if err := l.Scan(tax); err != nil {
if err == io.EOF {
return nil
}
}
if len(tax.Id) > 0 {
if tax.IsValid == valid {
return tax
}
}
}
}
func spInSearchNmdTaxon(c *cmdapp.Command, name, parent, txNum string, rank jdh.Rank) (bool, string) {
args := new(jdh.Values)
args.Add(jdh.TaxName, name)
if len(parent) != 0 {
args.Add(jdh.TaxParent, parent)
}
if rank != jdh.Unranked {
args.Add(jdh.TaxRank, rank.String())
}
l, err := localDB.List(jdh.Taxonomy, args)
if err != nil {
fmt.Fprintf(os.Stderr, "%s\n", c.ErrStr(err))
os.Exit(1)
}
defer l.Close()
var tax *jdh.Taxon
mult := false
for {
ot := &jdh.Taxon{}
if err := l.Scan(ot); err != nil {
if err == io.EOF {
break
}
fmt.Fprintf(os.Stderr, "%s\n", c.ErrStr(err))
os.Exit(1)
}
if tax == nil {
tax = ot
continue
}
if !mult {
if verboseFlag {
fmt.Fprintf(os.Stdout, "WARNING:\t%s\t%s\tAmbiguos name\n", txNum)
fmt.Fprintf(os.Stdout, "%s\t%s\n", tax.Id, tax.Name)
}
mult = true
}
if verboseFlag {
fmt.Fprintf(os.Stderr, "%s\t%s\n", ot.Id, ot.Name)
}
}
if mult || (tax == nil) {
return mult, ""
}
return false, tax.Id
}