コード例 #1
0
ファイル: search.go プロジェクト: TuftsBCB/flib
func search(c *command) {
	c.assertLeastNArg(2)

	// Some search options don't translate directly to command line parameters
	// specified by the flag package.
	if flagSearchDesc {
		flagSearchOpts.Order = bowdb.OrderDesc
	}
	switch flagSearchSort {
	case "cosine":
		flagSearchOpts.SortBy = bowdb.SortByCosine
	case "euclid":
		flagSearchOpts.SortBy = bowdb.SortByEuclid
	default:
		util.Fatalf("Unknown sort field '%s'.", flagSearchSort)
	}

	db := util.OpenBowDB(c.flags.Arg(0))
	bowPaths := c.flags.Args()[1:]

	_, err := db.ReadAll()
	util.Assert(err, "Could not read BOW database entries")

	// always hide the progress bar here.
	bows := util.ProcessBowers(bowPaths, db.Lib, false, flagCpu, true)
	out, outDone := outputter()

	// launch goroutines to search queries in parallel
	wgSearch := new(sync.WaitGroup)
	for i := 0; i < flagCpu; i++ {
		wgSearch.Add(1)
		go func() {
			defer wgSearch.Done()

			for b := range bows {
				sr := db.Search(flagSearchOpts, b)
				out <- searchResult{b, sr}
			}
		}()
	}

	wgSearch.Wait()
	close(out)
	<-outDone
	util.Assert(db.Close())
}
コード例 #2
0
ファイル: mk_bowdb.go プロジェクト: TuftsBCB/flib
func mkBowDb(c *command) {
	c.assertLeastNArg(3)

	dbPath := c.flags.Arg(0)
	flib := util.Library(c.flags.Arg(1))
	bowPaths := c.flags.Args()[2:]

	util.AssertOverwritable(dbPath, flagOverwrite)

	db, err := bowdb.Create(flib, dbPath)
	util.Assert(err)

	bows := util.ProcessBowers(bowPaths, flib, false, flagCpu, util.FlagQuiet)
	for b := range bows {
		db.Add(b)
	}
	util.Assert(db.Close())
}
コード例 #3
0
ファイル: vectors.go プロジェクト: TuftsBCB/flib
func vectors(c *command) {
	c.assertLeastNArg(2)
	flib := util.Library(c.flags.Arg(0))
	bowPaths := c.flags.Args()[1:]

	tostrs := func(freqs []float32) []string {
		strs := make([]string, len(freqs))
		for i := range freqs {
			strs[i] = strconv.FormatFloat(float64(freqs[i]), 'f', -1, 32)
		}
		return strs
	}

	results := util.ProcessBowers(bowPaths, flib, flagPairdistModels,
		flagCpu, true)
	for r := range results {
		fmt.Printf("%s\t%s\n", r.Id, strings.Join(tostrs(r.Bow.Freqs), "\t"))
	}
}
コード例 #4
0
ファイル: pairdist.go プロジェクト: TuftsBCB/flib
func pairdist(c *command) {
	c.assertLeastNArg(2)
	flib := util.Library(c.flags.Arg(0))
	bowPaths := c.flags.Args()[1:]

	bows := make([]bow.Bowed, 0, 1000)
	results := util.ProcessBowers(bowPaths, flib, flagPairdistModels,
		flagCpu, util.FlagQuiet)
	for r := range results {
		bows = append(bows, r)
	}
	for i := 0; i < len(bows); i++ {
		b1 := bows[i]
		for j := i + 1; j < len(bows); j++ {
			b2 := bows[j]
			dist := math.Abs(b1.Bow.Cosine(b2.Bow))
			fmt.Printf("%s\t%s\t%0.4f\n", b1.Id, b2.Id, dist)
		}
	}
}