예제 #1
0
파일: workflow.go 프로젝트: cgravill/antha
func NewWorkflow(js []byte) (*Workflow, error) {
	//g := flow.ParseJSON(js)
	g, err := flow.ParseJSON(js)
	if err != nil {
		return nil, err
	}
	wf := &Workflow{
		Graph: *g,
	}
	for _, port := range wf.GetUnboundInPorts() {
		wf.InPorts = append(wf.InPorts, port)
		wf.Graph.MapInPort(fmt.Sprintf("%s.%s", port.Proc, port.Port), port.Proc, port.Port)
	}
	for _, port := range wf.GetUnboundOutPorts() {
		wf.OutPorts = append(wf.OutPorts, port)
		wf.Graph.MapOutPort(fmt.Sprintf("%s.%s", port.Proc, port.Port), port.Proc, port.Port)
	}
	return wf, nil
}
예제 #2
0
파일: func.go 프로젝트: cgravill/antha
// Runs the component graph with json input and producing json output
func Run(js []byte, dec *json.Decoder, enc *json.Encoder, errChan chan<- error) <-chan int {
	done := make(chan int)
	graph, err := flow.ParseJSON(js)
	if err != nil {
		errChan <- err
		close(errChan)
		done <- 1
		return done
	}

	flow.RunNet(graph)

	for _, port := range graph.GetUnboundOutPorts() {
		ch := make(chan execute.ThreadParam)
		graph.SetOutPort(port.Port, ch)
		go func() {
			for a := range ch {
				if err := enc.Encode(&a); err != nil {
					errChan <- err
				}
			}
		}()
	}

	inPortMap := make(map[string]chan execute.ThreadParam)
	for _, port := range graph.GetUnboundInPorts() {
		ch := make(chan execute.ThreadParam)
		inPortMap[port.Port] = ch
		graph.SetInPort(port.Port, ch)
	}
	go func() {
		for _, ch := range inPortMap {
			defer close(ch)
		}

		for {
			var p execute.JSONBlock
			if err := dec.Decode(&p); err != nil {
				if err != io.EOF {
					errChan <- err
				}
				return
			}
			if p.ID == nil { //TODO add error control in JSONBlock unmarshaling??
				errChan <- errors.New("No ID")
				continue
			}
			for k, v := range p.Values {
				tmp := make(map[string]interface{})
				tmp[k] = v
				sthg, err := json.Marshal(&tmp)
				if err != nil {
					continue
				}
				if _, exists := inPortMap[k]; exists {
					param := execute.ThreadParam{
						Value: execute.JSONValue{Name: k, JSONString: string(sthg)},
						ID:    *p.ID,
						Error: *p.Error,
					}
					inPortMap[k] <- param
				}
			}
		}
	}()

	go func() {
		<-graph.Wait()
		close(errChan)
		done <- 1
	}()

	return done
}