// Get reads data from the file.
func (f *File) Get(name string, something interface{}) error {
value := reflect.ValueOf(something)
if value.Kind() != reflect.Ptr {
return errors.New("expected a pointer")
}
value = reflect.Indirect(value)
cname := C.CString(name)
defer C.free(unsafe.Pointer(cname))
did := C.H5Dopen2(f.fid, cname, C.H5P_DEFAULT)
if did < 0 {
return errors.New("cannot find the dataset")
}
defer C.H5Dclose(did)
object := newObject()
defer object.free()
object.tid = C.H5Dget_type(did)
if object.tid < 0 {
return errors.New("cannot get the datatype of the dataset")
}
if err := initializeToGet(object, value); err != nil {
return err
}
if C.H5Dread(did, object.tid, C.H5S_ALL, C.H5S_ALL, C.H5P_DEFAULT, object.data) < 0 {
return errors.New("cannot read the dataset from the file")
}
if err := finalizeToGet(object, value); err != nil {
return err
}
one := C.hsize_t(1)
sid := C.H5Screate_simple(1, (*C.hsize_t)(unsafe.Pointer(&one)), nil)
if sid < 0 {
return errors.New("cannot create a data space")
}
defer C.H5Sclose(sid)
if C.H5Dvlen_reclaim(object.tid, sid, C.H5P_DEFAULT, object.data) < 0 {
return errors.New("cannot reclaim memory")
}
return nil
}
// Creates a new simple dataspace and opens it for access.
// hid_t H5Screate_simple( int rank, const hsize_t * current_dims, const hsize_t * maximum_dims )
func CreateSimpleDataSpace(dims, maximum_dims []int) (*DataSpace, error) {
var c_dims *C.hsize_t = nil
var c_maxdims *C.hsize_t = nil
rank := C.int(0)
if dims != nil {
rank = C.int(len(dims))
// FIXME: size of C.hsize_t and go.int !!
c_dims = (*C.hsize_t)(unsafe.Pointer(&dims[0]))
}
if maximum_dims != nil {
rank = C.int(len(maximum_dims))
// FIXME: size of C.hsize_t and go.int !!
c_maxdims = (*C.hsize_t)(unsafe.Pointer(&maximum_dims[0]))
}
if len(dims) != len(maximum_dims) && (dims != nil && maximum_dims != nil) {
return nil, errors.New("sizes of 'dims' and 'maximum_dims' dont match")
}
hid := C.H5Screate_simple(rank, c_dims, c_maxdims)
err := togo_err(C.herr_t(int(hid)))
if err != nil {
return nil, err
}
ds := new_dataspace(hid)
return ds, err
}
// CreateSimpleDataspace creates a new simple dataspace and opens it for access.
func CreateSimpleDataspace(dims, maxDims []uint) (*Dataspace, error) {
var c_dims, c_maxdims *C.hsize_t
rank := C.int(0)
if dims != nil {
rank = C.int(len(dims))
c_dims = (*C.hsize_t)(unsafe.Pointer(&dims[0]))
}
if maxDims != nil {
rank = C.int(len(maxDims))
c_maxdims = (*C.hsize_t)(unsafe.Pointer(&maxDims[0]))
}
if len(dims) != len(maxDims) && (dims != nil && maxDims != nil) {
return nil, errors.New("lengths of dims and maxDims do not match")
}
hid := C.H5Screate_simple(rank, c_dims, c_maxdims)
if hid < 0 {
return nil, fmt.Errorf("failed to create dataspace")
}
return newDataspace(hid), nil
}
// Put writes data into the file.
func (f *File) Put(name string, something interface{}, dimensions ...uint) error {
object := newObject()
defer object.free()
if err := initializeToPut(object, reflect.ValueOf(something), dimensions...); err != nil {
return err
}
cname := C.CString(name)
defer C.free(unsafe.Pointer(cname))
one := C.hsize_t(1)
sid := C.H5Screate_simple(1, (*C.hsize_t)(unsafe.Pointer(&one)), nil)
if sid < 0 {
return errors.New("cannot create a data space")
}
defer C.H5Sclose(sid)
if result := C.H5Lexists(f.fid, cname, C.H5P_DEFAULT); result < 0 {
return errors.New("cannot check if the name already exists")
} else if result > 0 && C.H5Ldelete(f.fid, cname, C.H5P_DEFAULT) < 0 {
return errors.New("cannot overwrite an existing dataset")
}
did := C.H5Dcreate2(f.fid, cname, object.tid, sid, C.H5P_DEFAULT, C.H5P_DEFAULT, C.H5P_DEFAULT)
if did < 0 {
return errors.New("cannot create a dataset")
}
defer C.H5Dclose(did)
if C.H5Dwrite(did, object.tid, C.H5S_ALL, C.H5S_ALL, C.H5P_DEFAULT, object.data) < 0 {
return errors.New("cannot write the dataset into the file")
}
return nil
}
