func main() {
dbPath := util.Arg(0)
fragLibDir := util.Arg(1)
pdbFiles := flag.Args()[2:]
util.Assert(createBowDb(dbPath, fragLibDir, pdbFiles))
db, err := bow.OpenDB(dbPath)
util.Assert(err)
bowOpts := bow.SearchDefault
bowOpts.Limit = 200
mattOpts := matt.DefaultConfig
mattOpts.Verbose = false
chains := createChains(pdbFiles)
mattArgs := createMattArgs(chains)
tabw := tabwriter.NewWriter(os.Stdout, 0, 4, 4, ' ', 0)
header := []byte(
"BOW entry\t" +
"BOW chain\t" +
"BOW dist\t" +
"Matt entry\t" +
"Matt chain\t" +
"Matt dist\n")
for i, chain := range chains {
marg := mattArgs[i]
bowOrdered := getBowOrdering(db, bowOpts, chain)
mattOrdered := getMattOrdering(mattOpts, marg, mattArgs)
fmt.Printf("Ordering for %s (chain %c)\n",
chain.Entry.IdCode, chain.Ident)
compared := comparison([2]ordering{bowOrdered, mattOrdered})
tabw.Write(header)
tabw.Write([]byte(compared.String()))
tabw.Flush()
fmt.Println("\n")
}
util.Assert(db.Close())
}
func main() {
db := util.OpenBOWDB(util.Arg(0))
// Set our search options.
bowOpts := bow.SearchDefault
bowOpts.Limit = -1
fmt.Println("QueryID\tResultID\tCosine\tEuclid")
for _, entry := range db.Entries {
results := db.SearchEntry(bowOpts, entry)
for _, result := range results {
fmt.Printf("%s\t%c\t%s\t%c\t%0.4f\t%0.4f\n",
entry.Id, result.Entry.Id, result.Cosine, result.Euclid)
}
fmt.Println("")
}
util.Assert(db.Close())
}