// read cnv files in two pass, the first to get dimensions
// second to get data
func ReadSeabird(nc *lib.Nc, m *config.Map, filestruct analyze.Structfile, cfg toml.Configtoml, files []string, optCfgfile string, optAll *bool, optDebug *bool, prefixAll string) {
switch {
case filestruct.Instrument == cfg.Instrument.Type[0]:
config.GetConfigCTD(nc, m, cfg, optCfgfile, filestruct.TypeInstrument, optAll)
// first pass, return dimensions fron cnv files
nc.Dimensions["TIME"], nc.Dimensions["DEPTH"] = firstPassCTD(nc, m, cfg, files)
// initialize 2D data
nc.Variables_2D = make(lib.AllData_2D)
for i, _ := range m.Map_var {
nc.Variables_2D.NewData_2D(i, nc.Dimensions["TIME"], nc.Dimensions["DEPTH"])
}
// second pass, read files again, extract data and fill slices
secondPassCTD(nc, m, cfg, files, optDebug)
// write ASCII file
WriteAscii(nc, cfg, m.Map_format, m.Hdr, filestruct.Instrument, prefixAll)
// write netcdf file
//if err := nc.WriteNetcdf(); err != nil {
//log.Fatal(err)
//}
netcdf.WriteNetcdf(nc, m, cfg, filestruct.Instrument, prefixAll)
case filestruct.Instrument == cfg.Instrument.Type[1]:
config.GetConfigBTL(nc, m, cfg, optCfgfile, filestruct.TypeInstrument)
// first pass, return dimensions fron btl files
nc.Dimensions["TIME"], nc.Dimensions["DEPTH"] = firstPassBTL(nc, m, cfg, files)
// initialize 2D data
nc.Variables_2D = make(lib.AllData_2D)
for i, _ := range m.Map_var {
nc.Variables_2D.NewData_2D(i, nc.Dimensions["TIME"], nc.Dimensions["DEPTH"])
}
// second pass, read files again, extract data and fill slices
secondPassBTL(nc, m, cfg, files, optDebug)
// write ASCII file
WriteAscii(nc, cfg, m.Map_format, m.Hdr, filestruct.Instrument, prefixAll)
// write netcdf file
//if err := nc.WriteNetcdf(); err != nil {
//log.Fatal(err)
//}
netcdf.WriteNetcdf(nc, m, cfg, filestruct.Instrument, prefixAll)
}
}