func _TestMarshal(*testing.T) {
lhc := wtype.NewLHComponent()
lhc.Vol = 34
lhc.Vunit = "ul"
b, _ := json.Marshal(lhc)
lhc2 := wtype.NewLHComponent()
json.Unmarshal(b, &lhc2)
}
func get_aggregate_component(sol *wtype.LHSolution, name string) *wtype.LHComponent {
components := sol.Components
ret := wtype.NewLHComponent()
ret.CName = name
vol := 0.0
for _, component := range components {
nm := component.CName
if nm == name {
ret.Type = component.Type
vol += component.Vol
ret.Vunit = component.Vunit
ret.Loc = component.Loc
ret.Order = component.Order
}
}
ret.Vol = vol
return ret
}
// take a sample of this liquid to be used to make the solution up to
// a particular total volume
func SampleForTotalVolume(l wtype.Liquid, v wunit.Volume) *wtype.LHComponent {
ret := wtype.NewLHComponent()
ret.CName = l.Name()
ret.Tvol = v.RawValue()
ret.Vunit = v.Unit().PrefixedSymbol()
ret.LContainer = l.Container().(*wtype.LHWell)
ret.CName = l.Name()
ret.Extra = l.GetExtra()
ret.Smax = l.GetSmax()
ret.Visc = l.GetVisc()
return ret
}
// take a sample of this liquid and aim for a particular concentration
func SampleForConcentration(l wtype.Liquid, c wunit.Concentration) *wtype.LHComponent {
ret := wtype.NewLHComponent()
ret.CName = l.Name()
// TODO fill in type here
ret.Conc = c.RawValue()
ret.Cunit = c.Unit().PrefixedSymbol()
ret.CName = l.Name()
ret.Extra = l.GetExtra()
ret.Smax = l.GetSmax()
ret.Visc = l.GetVisc()
ret.LContainer = l.Container().(*wtype.LHWell)
return ret
}
func makeComponentLibrary() map[string]*wtype.LHComponent {
matter := wtype.MakeMatterLib()
cmap := make(map[string]*wtype.LHComponent)
A := wtype.NewLHComponent()
A.GenericMatter = matter["water"]
A.CName = "water"
A.Type = "water"
A.Smax = 9999
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["water"]
A.CName = "tartrazine"
A.Type = "water"
A.Smax = 9999
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["water"]
A.CName = "DNAsolution"
A.Type = "dna"
A.Smax = 1.0
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["glycerol"]
A.CName = "restrictionenzyme"
A.Type = "glycerol"
A.Smax = 100
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["water"]
A.CName = "dna_part"
A.Type = "dna"
A.Smax = 1.0
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["glycerol"]
A.CName = "SapI"
A.Type = "glycerol"
A.Smax = 1.0
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["glycerol"]
A.CName = "T4Ligase"
A.Type = "glycerol"
A.Smax = 1.0
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["water"]
A.CName = "CutsmartBuffer"
A.Type = "water"
A.Smax = 1.0
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["water"]
A.CName = "ATP"
A.Type = "water"
A.Smax = 5.0
cmap[A.CName] = A
A = wtype.NewLHComponent()
A.GenericMatter = matter["water"]
A.CName = "standard_cloning_vector_mark_1"
A.Type = "water"
A.Smax = 1.0
cmap[A.CName] = A
return cmap
}