// Do handles command-line requests to the Google BrainMaps API
func (dtype *Type) Do(cmd datastore.Request, reply *datastore.Response) error {
switch cmd.Argument(1) {
case "volumes":
// Read in the JSON Web Token
jwtdata, err := ioutil.ReadFile(cmd.Argument(2))
if err != nil {
return fmt.Errorf("Cannot load JSON Web Token file (%s): %v", cmd.Argument(2), err)
}
conf, err := google.JWTConfigFromJSON(jwtdata, "https://www.googleapis.com/auth/brainmaps")
if err != nil {
return fmt.Errorf("Cannot establish JWT Config file from Google: %v", err)
}
client := conf.Client(oauth2.NoContext)
// Make the call.
url := fmt.Sprintf("%s/volumes", bmapsPrefix)
resp, err := client.Get(url)
if err != nil {
return fmt.Errorf("Error getting volumes metadata from Google: %v", err)
}
if resp.StatusCode != http.StatusOK {
return fmt.Errorf("Unexpected status code %d returned when getting volumes for user", resp.StatusCode)
}
metadata, err := ioutil.ReadAll(resp.Body)
if err != nil {
return err
}
resp.Body.Close()
reply.Text = string(metadata)
return nil
default:
return fmt.Errorf("unknown command for type %s", dtype.GetTypeName())
}
}
// DoRPC handles the 'generate' command.
func (d *Data) DoRPC(request datastore.Request, reply *datastore.Response) error {
if request.TypeCommand() != "generate" {
return fmt.Errorf("Unknown command. Data instance '%s' [%s] does not support '%s' command.",
d.DataName(), d.TypeName(), request.TypeCommand())
}
var uuidStr, dataName, cmdStr string
request.CommandArgs(1, &uuidStr, &dataName, &cmdStr)
// Get the imagetile generation configuration from a file or stdin.
var err error
var tileSpec TileSpec
if request.Input != nil {
tileSpec, err = LoadTileSpec(request.Input)
if err != nil {
return err
}
} else {
config := request.Settings()
filename, found, err := config.GetString("filename")
if err != nil {
return err
}
if found {
configData, err := storage.DataFromFile(filename)
if err != nil {
return err
}
tileSpec, err = LoadTileSpec(configData)
if err != nil {
return err
}
dvid.Infof("Using tile spec file: %s\n", filename)
} else {
dvid.Infof("Using default tile generation method since no tile spec file was given...\n")
tileSpec, err = d.DefaultTileSpec(uuidStr)
if err != nil {
return err
}
}
}
reply.Text = fmt.Sprintf("Tiling data instance %q @ node %s...\n", dataName, uuidStr)
go func() {
err := d.ConstructTiles(uuidStr, tileSpec, request)
if err != nil {
dvid.Errorf("Cannot construct tiles for data instance %q @ node %s: %v\n", dataName, uuidStr, err)
}
}()
return nil
}
// LoadLocal adds image data to a version node. See HelpMessage for example of
// command-line use of "load local".
func (d *Data) LoadLocal(request datastore.Request, reply *datastore.Response) error {
timedLog := dvid.NewTimeLog()
// Parse the request
var uuidStr, dataName, cmdStr, sourceStr, filename string
_ = request.CommandArgs(1, &uuidStr, &dataName, &cmdStr, &sourceStr, &filename)
// Get the uuid from a uniquely identifiable string
uuid, versionID, err := datastore.MatchingUUID(uuidStr)
if err != nil {
return fmt.Errorf("Could not find node with UUID %s: %v", uuidStr, err)
}
// Load the V3D Raw file.
ext := filepath.Ext(filename)
switch ext {
case ".raw", ".v3draw":
default:
return fmt.Errorf("Unknown extension '%s' when expected V3D Raw file", ext)
}
file, err := os.Open(filename)
if err != nil {
return err
}
unmarshaler := V3DRawMarshaler{}
channels, err := unmarshaler.UnmarshalV3DRaw(file)
if err != nil {
return err
}
// Store the metadata
d.NumChannels = len(channels)
d.Properties.Values = make(dvid.DataValues, d.NumChannels)
if d.NumChannels > 0 {
reply.Text = fmt.Sprintf("Loaded %s into data '%s': found %d channels\n",
d.DataName(), filename, d.NumChannels)
reply.Text += fmt.Sprintf(" %s", channels[0])
} else {
reply.Text = fmt.Sprintf("Found no channels in file %s\n", filename)
return nil
}
for i, channel := range channels {
d.Properties.Values[i] = channel.Voxels.Values()[0]
}
// Get repo and save it.
if err := datastore.SaveDataByUUID(uuid, d); err != nil {
return err
}
// PUT each channel of the file into the datastore using a separate data name.
for _, channel := range channels {
dvid.Infof("Processing channel %d... \n", channel.channelNum)
err = d.PutVoxels(versionID, channel.Voxels, nil)
if err != nil {
return err
}
}
// Create a RGB composite from the first 3 channels. This is considered to be channel 0
// or can be accessed with the base data name.
dvid.Infof("Creating composite image from channels...\n")
err = d.storeComposite(versionID, channels)
if err != nil {
return err
}
timedLog.Infof("RPC load local '%s' completed", filename)
return nil
}
// Do acts as a switchboard for remote command execution
func (c *RPCConnection) Do(cmd datastore.Request, reply *datastore.Response) error {
if reply == nil {
dvid.Debugf("reply is nil coming in!\n")
return nil
}
if cmd.Name() == "" {
return fmt.Errorf("Server error: got empty command!")
}
switch cmd.Name() {
case "help":
reply.Text = fmt.Sprintf(RPCHelpMessage, config.RPCAddress(), config.HTTPAddress())
case "shutdown":
Shutdown()
// Make this process shutdown in a second to allow time for RPC to finish.
// TODO -- Better way to do this?
log.Printf("DVID server halted due to 'shutdown' command.")
reply.Text = fmt.Sprintf("DVID server at %s has been halted.\n", config.RPCAddress())
go func() {
time.Sleep(1 * time.Second)
os.Exit(0)
}()
case "types":
if len(cmd.Command) == 1 {
text := "\nData Types within this DVID Server\n"
text += "----------------------------------\n"
mapTypes, err := datastore.Types()
if err != nil {
return fmt.Errorf("Error trying to retrieve data types within this DVID server!")
}
for url, typeservice := range mapTypes {
text += fmt.Sprintf("%-20s %s\n", typeservice.GetTypeName(), url)
}
reply.Text = text
} else {
if len(cmd.Command) != 3 || cmd.Command[2] != "help" {
return fmt.Errorf("Unknown types command: %q", cmd.Command)
}
var typename string
cmd.CommandArgs(1, &typename)
typeservice, err := datastore.TypeServiceByName(dvid.TypeString(typename))
if err != nil {
return err
}
reply.Text = typeservice.Help()
}
case "repos":
var subcommand, alias, description, uuidStr string
cmd.CommandArgs(1, &subcommand, &alias, &description, &uuidStr)
switch subcommand {
case "new":
var assign *dvid.UUID
if uuidStr == "" {
assign = nil
} else {
u := dvid.UUID(uuidStr)
assign = &u
}
root, err := datastore.NewRepo(alias, description, assign)
if err != nil {
return err
}
if err := datastore.SetRepoAlias(root, alias); err != nil {
return err
}
if err := datastore.SetRepoDescription(root, description); err != nil {
return err
}
reply.Text = fmt.Sprintf("New repo %q created with head node %s\n", alias, root)
default:
return fmt.Errorf("Unknown repos command: %q", subcommand)
}
case "repo":
var uuidStr, subcommand string
cmd.CommandArgs(1, &uuidStr, &subcommand)
uuid, _, err := datastore.MatchingUUID(uuidStr)
if err != nil {
return err
}
switch subcommand {
case "new":
var typename, dataname string
cmd.CommandArgs(3, &typename, &dataname)
// Get TypeService
typeservice, err := datastore.TypeServiceByName(dvid.TypeString(typename))
if err != nil {
return err
}
// Create new data
config := cmd.Settings()
_, err = datastore.NewData(uuid, typeservice, dvid.InstanceName(dataname), config)
if err != nil {
return err
}
reply.Text = fmt.Sprintf("Data %q [%s] added to node %s\n", dataname, typename, uuid)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "branch":
cmd.CommandArgs(3, &uuidStr)
var assign *dvid.UUID
if uuidStr == "" {
assign = nil
} else {
u := dvid.UUID(uuidStr)
assign = &u
}
child, err := datastore.NewVersion(uuid, fmt.Sprintf("branch of %s", uuid), assign)
if err != nil {
return err
}
reply.Text = fmt.Sprintf("Branch %s added to node %s\n", child, uuid)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "merge":
uuids := cmd.CommandArgs(2)
parents := make([]dvid.UUID, len(uuids)+1)
parents[0] = dvid.UUID(uuid)
i := 1
for uuid := range uuids {
parents[i] = dvid.UUID(uuid)
i++
}
child, err := datastore.Merge(parents, fmt.Sprintf("merge of parents %v", parents), datastore.MergeConflictFree)
if err != nil {
return err
}
reply.Text = fmt.Sprintf("Parents %v merged into node %s\n", parents, child)
datastore.AddToRepoLog(uuid, []string{cmd.String()})
case "push":
/*
var target string
cmd.CommandArgs(3, &target)
config := cmd.Settings()
if err = datastore.Push(repo, target, config); err != nil {
return err
}
reply.Text = fmt.Sprintf("Repo %q pushed to %q\n", repo.RootUUID(), target)
*/
return fmt.Errorf("push command has been temporarily suspended")
default:
return fmt.Errorf("Unknown command: %q", cmd)
}
case "node":
var uuidStr, descriptor string
cmd.CommandArgs(1, &uuidStr, &descriptor)
uuid, _, err := datastore.MatchingUUID(uuidStr)
if err != nil {
return err
}
// Get the DataService
dataname := dvid.InstanceName(descriptor)
var subcommand string
cmd.CommandArgs(3, &subcommand)
dataservice, err := datastore.GetDataByUUID(uuid, dataname)
if err != nil {
return err
}
if subcommand == "help" {
reply.Text = dataservice.Help()
return nil
}
return dataservice.DoRPC(cmd, reply)
default:
return fmt.Errorf("Unknown command: '%s'", cmd)
}
return nil
}