// ServeHTTP handles all incoming HTTP requests for this data. func (d *Data) ServeHTTP(uuid dvid.UUID, ctx *datastore.VersionedCtx, w http.ResponseWriter, r *http.Request) { // TODO -- Refactor this method to break it up and make it simpler. Use the web routing for the endpoints. timedLog := dvid.NewTimeLog() // Get the action (GET, POST) action := strings.ToLower(r.Method) switch action { case "get": case "post": case "delete": default: server.BadRequest(w, r, "labelblk only handles GET, POST, and DELETE HTTP verbs") return } // Break URL request into arguments url := r.URL.Path[len(server.WebAPIPath):] parts := strings.Split(url, "/") if len(parts[len(parts)-1]) == 0 { parts = parts[:len(parts)-1] } // Get query strings and possible roi var roiptr *imageblk.ROI queryValues := r.URL.Query() roiname := dvid.InstanceName(queryValues.Get("roi")) if len(roiname) != 0 { roiptr = new(imageblk.ROI) } // Handle POST on data -> setting of configuration if len(parts) == 3 && action == "post" { config, err := server.DecodeJSON(r) if err != nil { server.BadRequest(w, r, err) return } if err := d.ModifyConfig(config); err != nil { server.BadRequest(w, r, err) return } if err := datastore.SaveDataByUUID(uuid, d); err != nil { server.BadRequest(w, r, err) return } fmt.Fprintf(w, "Changed '%s' based on received configuration:\n%s\n", d.DataName(), config) return } if len(parts) < 4 { server.BadRequest(w, r, "Incomplete API request") return } // Process help and info. switch parts[3] { case "help": w.Header().Set("Content-Type", "text/plain") fmt.Fprintln(w, dtype.Help()) case "metadata": jsonStr, err := d.NdDataMetadata() if err != nil { server.BadRequest(w, r, err) return } w.Header().Set("Content-Type", "application/vnd.dvid-nd-data+json") fmt.Fprintln(w, jsonStr) case "info": jsonBytes, err := d.MarshalJSON() if err != nil { server.BadRequest(w, r, err) return } w.Header().Set("Content-Type", "application/json") fmt.Fprintf(w, string(jsonBytes)) case "label": // GET <api URL>/node/<UUID>/<data name>/label/<coord> if len(parts) < 5 { server.BadRequest(w, r, "DVID requires coord to follow 'label' command") return } coord, err := dvid.StringToPoint(parts[4], "_") if err != nil { server.BadRequest(w, r, err) return } label, err := d.GetLabelAtPoint(ctx.VersionID(), coord) if err != nil { server.BadRequest(w, r, err) return } w.Header().Set("Content-type", "application/json") jsonStr := fmt.Sprintf(`{"Label": %d}`, label) fmt.Fprintf(w, jsonStr) timedLog.Infof("HTTP %s: label at %s (%s)", r.Method, coord, r.URL) case "labels": // POST <api URL>/node/<UUID>/<data name>/labels if action != "post" { server.BadRequest(w, r, "Batch labels query must be a POST request") return } data, err := ioutil.ReadAll(r.Body) if err != nil { server.BadRequest(w, r, "Bad POSTed data for batch reverse query. Should be JSON.") return } var coords []dvid.Point3d if err := json.Unmarshal(data, &coords); err != nil { server.BadRequest(w, r, fmt.Sprintf("Bad labels request JSON: %v", err)) return } w.Header().Set("Content-type", "application/json") fmt.Fprintf(w, "[") sep := false for _, coord := range coords { label, err := d.GetLabelAtPoint(ctx.VersionID(), coord) if err != nil { server.BadRequest(w, r, err) return } if sep { fmt.Fprintf(w, ",") } fmt.Fprintf(w, "%d", label) sep = true } fmt.Fprintf(w, "]") timedLog.Infof("HTTP batch label-at-point query (%d coordinates)", len(coords)) case "blocks": // DELETE <api URL>/node/<UUID>/<data name>/blocks/<block coord>/<spanX> if len(parts) < 6 { server.BadRequest(w, r, "DVID requires starting block coord and # of blocks along X to follow 'blocks' endpoint.") return } blockCoord, err := dvid.StringToChunkPoint3d(parts[4], "_") if err != nil { server.BadRequest(w, r, err) return } span, err := strconv.Atoi(parts[5]) if err != nil { server.BadRequest(w, r, err) return } if action != "delete" { server.BadRequest(w, r, "DVID currently accepts only DELETE on the 'blocks' endpoint") return } if err := d.DeleteBlocks(ctx, blockCoord, span); err != nil { server.BadRequest(w, r, err) return } timedLog.Infof("HTTP %s: delete %d blocks from %s (%s)", r.Method, span, blockCoord, r.URL) case "pseudocolor": if len(parts) < 7 { server.BadRequest(w, r, "'%s' must be followed by shape/size/offset", parts[3]) return } shapeStr, sizeStr, offsetStr := parts[4], parts[5], parts[6] planeStr := dvid.DataShapeString(shapeStr) plane, err := planeStr.DataShape() if err != nil { server.BadRequest(w, r, err) return } switch plane.ShapeDimensions() { case 2: slice, err := dvid.NewSliceFromStrings(planeStr, offsetStr, sizeStr, "_") if err != nil { server.BadRequest(w, r, err) return } if action != "get" { server.BadRequest(w, r, "DVID does not permit 2d mutations, only 3d block-aligned stores") return } lbl, err := d.NewLabels(slice, nil) if err != nil { server.BadRequest(w, r, err) return } if roiptr != nil { roiptr.Iter, err = roi.NewIterator(roiname, ctx.VersionID(), lbl) if err != nil { server.BadRequest(w, r, err) return } } img, err := d.GetImage(ctx.VersionID(), lbl, roiptr) if err != nil { server.BadRequest(w, r, err) return } // Convert to pseudocolor pseudoColor, err := colorImage(img) if err != nil { server.BadRequest(w, r, err) return } //dvid.ElapsedTime(dvid.Normal, startTime, "%s %s upto image formatting", op, slice) var formatStr string if len(parts) >= 8 { formatStr = parts[7] } err = dvid.WriteImageHttp(w, pseudoColor, formatStr) if err != nil { server.BadRequest(w, r, err) return } timedLog.Infof("HTTP %s: %s (%s)", r.Method, plane, r.URL) default: server.BadRequest(w, r, "DVID currently supports only 2d pseudocolor image requests") return } case "raw", "isotropic": if len(parts) < 7 { server.BadRequest(w, r, "'%s' must be followed by shape/size/offset", parts[3]) return } var isotropic bool = (parts[3] == "isotropic") shapeStr, sizeStr, offsetStr := parts[4], parts[5], parts[6] planeStr := dvid.DataShapeString(shapeStr) plane, err := planeStr.DataShape() if err != nil { server.BadRequest(w, r, err) return } switch plane.ShapeDimensions() { case 2: slice, err := dvid.NewSliceFromStrings(planeStr, offsetStr, sizeStr, "_") if err != nil { server.BadRequest(w, r, err) return } if action != "get" { server.BadRequest(w, r, "DVID does not permit 2d mutations, only 3d block-aligned stores") return } rawSlice, err := dvid.Isotropy2D(d.Properties.VoxelSize, slice, isotropic) lbl, err := d.NewLabels(rawSlice, nil) if err != nil { server.BadRequest(w, r, err) return } if roiptr != nil { roiptr.Iter, err = roi.NewIterator(roiname, ctx.VersionID(), lbl) if err != nil { server.BadRequest(w, r, err) return } } img, err := d.GetImage(ctx.VersionID(), lbl, roiptr) if err != nil { server.BadRequest(w, r, err) return } if isotropic { dstW := int(slice.Size().Value(0)) dstH := int(slice.Size().Value(1)) img, err = img.ScaleImage(dstW, dstH) if err != nil { server.BadRequest(w, r, err) return } } var formatStr string if len(parts) >= 8 { formatStr = parts[7] } //dvid.ElapsedTime(dvid.Normal, startTime, "%s %s upto image formatting", op, slice) err = dvid.WriteImageHttp(w, img.Get(), formatStr) if err != nil { server.BadRequest(w, r, err) return } timedLog.Infof("HTTP %s: %s (%s)", r.Method, plane, r.URL) case 3: queryStrings := r.URL.Query() throttle := queryStrings.Get("throttle") if throttle == "true" || throttle == "on" { select { case <-server.Throttle: // Proceed with operation, returning throttle token to server at end. defer func() { server.Throttle <- 1 }() default: throttleMsg := fmt.Sprintf("Server already running maximum of %d throttled operations", server.MaxThrottledOps) http.Error(w, throttleMsg, http.StatusServiceUnavailable) return } } compression := queryValues.Get("compression") subvol, err := dvid.NewSubvolumeFromStrings(offsetStr, sizeStr, "_") if err != nil { server.BadRequest(w, r, err) return } if action == "get" { lbl, err := d.NewLabels(subvol, nil) if err != nil { server.BadRequest(w, r, err) return } if roiptr != nil { roiptr.Iter, err = roi.NewIterator(roiname, ctx.VersionID(), lbl) if err != nil { server.BadRequest(w, r, err) return } } data, err := d.GetVolume(ctx.VersionID(), lbl, roiptr) if err != nil { server.BadRequest(w, r, err) return } w.Header().Set("Content-type", "application/octet-stream") switch compression { case "": _, err = w.Write(data) if err != nil { server.BadRequest(w, r, err) return } case "lz4": compressed := make([]byte, lz4.CompressBound(data)) var n, outSize int if outSize, err = lz4.Compress(data, compressed); err != nil { server.BadRequest(w, r, err) return } compressed = compressed[:outSize] if n, err = w.Write(compressed); err != nil { server.BadRequest(w, r, err) return } if n != outSize { errmsg := fmt.Sprintf("Only able to write %d of %d lz4 compressed bytes\n", n, outSize) dvid.Errorf(errmsg) server.BadRequest(w, r, errmsg) return } case "gzip": gw := gzip.NewWriter(w) if _, err = gw.Write(data); err != nil { server.BadRequest(w, r, err) return } if err = gw.Close(); err != nil { server.BadRequest(w, r, err) return } default: server.BadRequest(w, r, "unknown compression type %q", compression) return } } else { if isotropic { server.BadRequest(w, r, "can only POST 'raw' not 'isotropic' images") return } // Make sure vox is block-aligned if !dvid.BlockAligned(subvol, d.BlockSize()) { server.BadRequest(w, r, "cannot store labels in non-block aligned geometry %s -> %s", subvol.StartPoint(), subvol.EndPoint()) return } var data []byte switch compression { case "": tlog := dvid.NewTimeLog() data, err = ioutil.ReadAll(r.Body) if err != nil { server.BadRequest(w, r, err) return } tlog.Debugf("read 3d uncompressed POST") case "lz4": tlog := dvid.NewTimeLog() data, err = ioutil.ReadAll(r.Body) if err != nil { server.BadRequest(w, r, err) return } if len(data) == 0 { server.BadRequest(w, r, "received 0 LZ4 compressed bytes") return } tlog.Debugf("read 3d lz4 POST") tlog = dvid.NewTimeLog() uncompressed := make([]byte, subvol.NumVoxels()*8) err = lz4.Uncompress(data, uncompressed) if err != nil { server.BadRequest(w, r, err) return } data = uncompressed tlog.Debugf("uncompressed 3d lz4 POST") case "gzip": tlog := dvid.NewTimeLog() gr, err := gzip.NewReader(r.Body) if err != nil { server.BadRequest(w, r, err) return } data, err = ioutil.ReadAll(gr) if err != nil { server.BadRequest(w, r, err) return } if err = gr.Close(); err != nil { server.BadRequest(w, r, err) return } tlog.Debugf("read and uncompress 3d gzip POST") default: server.BadRequest(w, r, "unknown compression type %q", compression) return } lbl, err := d.NewLabels(subvol, data) if err != nil { server.BadRequest(w, r, err) return } if roiptr != nil { roiptr.Iter, err = roi.NewIterator(roiname, ctx.VersionID(), lbl) if err != nil { server.BadRequest(w, r, err) return } } if err = d.PutVoxels(ctx.VersionID(), lbl.Voxels, roiptr); err != nil { server.BadRequest(w, r, err) return } } timedLog.Infof("HTTP %s: %s (%s)", r.Method, subvol, r.URL) default: server.BadRequest(w, r, "DVID currently supports shapes of only 2 and 3 dimensions") return } default: server.BadRequest(w, r, "Unrecognized API call %q for labelblk data %q. See API help.", parts[3], d.DataName()) } }
// GetImage returns an image given a 2d orthogonal image description. Since imagetile tiles // have precomputed XY, XZ, and YZ orientations, reconstruction of the desired image should // be much faster than computing the image from voxel blocks. func (d *Data) GetImage(ctx storage.Context, src *imageblk.Data, geom dvid.Geometry, isotropic bool) (*dvid.Image, error) { // Iterate through tiles that intersect our geometry. if d.Levels == nil || len(d.Levels) == 0 { return nil, fmt.Errorf("%s has no specification for tiles at highest resolution", d.DataName()) } levelSpec := d.Levels[0] minSlice, err := dvid.Isotropy2D(src.VoxelSize, geom, isotropic) if err != nil { return nil, err } // Create an image of appropriate size and type using source's ExtData creation. dstW := minSlice.Size().Value(0) dstH := minSlice.Size().Value(1) dst, err := src.BlankImage(dstW, dstH) if err != nil { return nil, err } // Read each tile that intersects the geometry and store into final image. slice := minSlice.DataShape() tileW, tileH, err := slice.GetSize2D(levelSpec.TileSize) if err != nil { return nil, err } tileSize := dvid.Point2d{tileW, tileH} minPtX, minPtY, err := slice.GetSize2D(minSlice.StartPoint()) if err != nil { return nil, err } wg := new(sync.WaitGroup) topLeftGlobal := dvid.Point2d{minPtX, minPtY} tilePt := topLeftGlobal.Chunk(tileSize) bottomRightGlobal := tilePt.MaxPoint(tileSize).(dvid.Point2d) y0 := int32(0) y1 := bottomRightGlobal[1] - minPtY + 1 for y0 < dstH { x0 := int32(0) x1 := bottomRightGlobal[0] - minPtX + 1 for x0 < dstW { wg.Add(1) go func(x0, y0, x1, y1 int32) { defer wg.Done() // Get this tile from datastore tileCoord, err := slice.PlaneToChunkPoint3d(x0, y0, minSlice.StartPoint(), levelSpec.TileSize) goImg, err := d.GetTile(ctx, slice, 0, dvid.IndexZYX(tileCoord)) if err != nil || goImg == nil { return } // Get tile space coordinate for top left. curStart := dvid.Point2d{x0 + minPtX, y0 + minPtY} p := curStart.PointInChunk(tileSize) ptInTile := image.Point{int(p.Value(0)), int(p.Value(1))} // Paste the pertinent rectangle from this tile into our destination. r := image.Rect(int(x0), int(y0), int(x1), int(y1)) draw.Draw(dst.GetDrawable(), r, goImg, ptInTile, draw.Src) }(x0, y0, x1, y1) x0 = x1 x1 += tileW } y0 = y1 y1 += tileH } wg.Wait() if isotropic { dstW := int(geom.Size().Value(0)) dstH := int(geom.Size().Value(1)) dst, err = dst.ScaleImage(dstW, dstH) if err != nil { return nil, err } } return dst, nil }
// ServeHTTP handles all incoming HTTP requests for this data. func (d *Data) ServeHTTP(uuid dvid.UUID, ctx *datastore.VersionedCtx, w http.ResponseWriter, r *http.Request) { timedLog := dvid.NewTimeLog() // Get the action (GET, POST) action := strings.ToLower(r.Method) switch action { case "get": case "post": default: server.BadRequest(w, r, "Can only handle GET or POST HTTP verbs") return } // Break URL request into arguments url := r.URL.Path[len(server.WebAPIPath):] parts := strings.Split(url, "/") if len(parts[len(parts)-1]) == 0 { parts = parts[:len(parts)-1] } // Get query strings and possible roi var roiptr *ROI queryValues := r.URL.Query() roiname := dvid.InstanceName(queryValues.Get("roi")) if len(roiname) != 0 { roiptr = new(ROI) attenuationStr := queryValues.Get("attenuation") if len(attenuationStr) != 0 { attenuation, err := strconv.Atoi(attenuationStr) if err != nil { server.BadRequest(w, r, err) return } if attenuation < 1 || attenuation > 7 { server.BadRequest(w, r, "Attenuation should be from 1 to 7 (divides by 2^n)") return } roiptr.attenuation = uint8(attenuation) } } // Handle POST on data -> setting of configuration if len(parts) == 3 && action == "put" { fmt.Printf("Setting configuration of data '%s'\n", d.DataName()) config, err := server.DecodeJSON(r) if err != nil { server.BadRequest(w, r, err) return } if err := d.ModifyConfig(config); err != nil { server.BadRequest(w, r, err) return } if err := datastore.SaveDataByUUID(uuid, d); err != nil { server.BadRequest(w, r, err) return } fmt.Fprintf(w, "Changed '%s' based on received configuration:\n%s\n", d.DataName(), config) return } if len(parts) < 4 { server.BadRequest(w, r, "Incomplete API request") return } // Process help and info. switch parts[3] { case "help": w.Header().Set("Content-Type", "text/plain") fmt.Fprintln(w, d.Help()) return case "metadata": jsonStr, err := d.NdDataMetadata() if err != nil { server.BadRequest(w, r, err) return } w.Header().Set("Content-Type", "application/vnd.dvid-nd-data+json") fmt.Fprintln(w, jsonStr) return case "info": jsonBytes, err := d.MarshalJSON() if err != nil { server.BadRequest(w, r, err) return } w.Header().Set("Content-Type", "application/json") fmt.Fprintf(w, string(jsonBytes)) return case "rawkey": // GET <api URL>/node/<UUID>/<data name>/rawkey?x=<block x>&y=<block y>&z=<block z> if len(parts) != 4 { server.BadRequest(w, r, "rawkey endpoint should be followed by query strings (x, y, and z) giving block coord") return } case "blocks": // GET <api URL>/node/<UUID>/<data name>/blocks/<block coord>/<spanX> // POST <api URL>/node/<UUID>/<data name>/blocks/<block coord>/<spanX> if len(parts) < 6 { server.BadRequest(w, r, "%q must be followed by block-coord/span-x", parts[3]) return } blockCoord, err := dvid.StringToChunkPoint3d(parts[4], "_") if err != nil { server.BadRequest(w, r, err) return } span, err := strconv.Atoi(parts[5]) if err != nil { server.BadRequest(w, r, err) return } if action == "get" { data, err := d.GetBlocks(ctx.VersionID(), blockCoord, int32(span)) if err != nil { server.BadRequest(w, r, err) return } w.Header().Set("Content-type", "application/octet-stream") _, err = w.Write(data) if err != nil { server.BadRequest(w, r, err) return } } else { if err := d.PutBlocks(ctx.VersionID(), blockCoord, span, r.Body); err != nil { server.BadRequest(w, r, err) return } } timedLog.Infof("HTTP %s: Blocks (%s)", r.Method, r.URL) case "arb": // GET <api URL>/node/<UUID>/<data name>/arb/<top left>/<top right>/<bottom left>/<res>[/<format>] if len(parts) < 8 { server.BadRequest(w, r, "%q must be followed by top-left/top-right/bottom-left/res", parts[3]) return } queryStrings := r.URL.Query() throttle := queryStrings.Get("throttle") if throttle == "true" || throttle == "on" { select { case <-server.Throttle: // Proceed with operation, returning throttle token to server at end. defer func() { server.Throttle <- 1 }() default: throttleMsg := fmt.Sprintf("Server already running maximum of %d throttled operations", server.MaxThrottledOps) http.Error(w, throttleMsg, http.StatusServiceUnavailable) return } } img, err := d.GetArbitraryImage(ctx, parts[4], parts[5], parts[6], parts[7]) if err != nil { server.BadRequest(w, r, err) return } var formatStr string if len(parts) >= 9 { formatStr = parts[8] } err = dvid.WriteImageHttp(w, img.Get(), formatStr) if err != nil { server.BadRequest(w, r, err) return } timedLog.Infof("HTTP %s: Arbitrary image (%s)", r.Method, r.URL) case "raw", "isotropic": // GET <api URL>/node/<UUID>/<data name>/isotropic/<dims>/<size>/<offset>[/<format>] if len(parts) < 7 { server.BadRequest(w, r, "%q must be followed by shape/size/offset", parts[3]) return } var isotropic bool = (parts[3] == "isotropic") shapeStr, sizeStr, offsetStr := parts[4], parts[5], parts[6] planeStr := dvid.DataShapeString(shapeStr) plane, err := planeStr.DataShape() if err != nil { server.BadRequest(w, r, err) return } switch plane.ShapeDimensions() { case 2: slice, err := dvid.NewSliceFromStrings(planeStr, offsetStr, sizeStr, "_") if err != nil { server.BadRequest(w, r, err) return } if action != "get" { server.BadRequest(w, r, "DVID does not permit 2d mutations, only 3d block-aligned stores") return } rawSlice, err := dvid.Isotropy2D(d.Properties.VoxelSize, slice, isotropic) if err != nil { server.BadRequest(w, r, err) return } vox, err := d.NewVoxels(rawSlice, nil) if err != nil { server.BadRequest(w, r, err) return } if roiptr != nil { roiptr.Iter, err = roi.NewIterator(roiname, ctx.VersionID(), vox) if err != nil { server.BadRequest(w, r, err) return } } img, err := d.GetImage(ctx.VersionID(), vox, roiptr) if err != nil { server.BadRequest(w, r, err) return } if isotropic { dstW := int(slice.Size().Value(0)) dstH := int(slice.Size().Value(1)) img, err = img.ScaleImage(dstW, dstH) if err != nil { server.BadRequest(w, r, err) return } } var formatStr string if len(parts) >= 8 { formatStr = parts[7] } err = dvid.WriteImageHttp(w, img.Get(), formatStr) if err != nil { server.BadRequest(w, r, err) return } timedLog.Infof("HTTP %s: %s (%s)", r.Method, plane, r.URL) case 3: queryStrings := r.URL.Query() if queryStrings.Get("throttle") == "on" { select { case <-server.Throttle: // Proceed with operation, returning throttle token to server at end. defer func() { server.Throttle <- 1 }() default: throttleMsg := fmt.Sprintf("Server already running maximum of %d throttled operations", server.MaxThrottledOps) http.Error(w, throttleMsg, http.StatusServiceUnavailable) return } } subvol, err := dvid.NewSubvolumeFromStrings(offsetStr, sizeStr, "_") if err != nil { server.BadRequest(w, r, err) return } if action == "get" { vox, err := d.NewVoxels(subvol, nil) if err != nil { server.BadRequest(w, r, err) return } if roiptr != nil { roiptr.Iter, err = roi.NewIterator(roiname, ctx.VersionID(), vox) if err != nil { server.BadRequest(w, r, err) return } } data, err := d.GetVolume(ctx.VersionID(), vox, roiptr) if err != nil { server.BadRequest(w, r, err) return } w.Header().Set("Content-type", "application/octet-stream") _, err = w.Write(data) if err != nil { server.BadRequest(w, r, err) return } } else { if isotropic { err := fmt.Errorf("can only PUT 'raw' not 'isotropic' images") server.BadRequest(w, r, err) return } // Make sure vox is block-aligned if !dvid.BlockAligned(subvol, d.BlockSize()) { server.BadRequest(w, r, "cannot store voxels in non-block aligned geometry %s -> %s", subvol.StartPoint(), subvol.EndPoint()) return } data, err := ioutil.ReadAll(r.Body) if err != nil { server.BadRequest(w, r, err) return } vox, err := d.NewVoxels(subvol, data) if err != nil { server.BadRequest(w, r, err) return } if roiptr != nil { roiptr.Iter, err = roi.NewIterator(roiname, ctx.VersionID(), vox) if err != nil { server.BadRequest(w, r, err) return } } if err = d.PutVoxels(ctx.VersionID(), vox, roiptr); err != nil { server.BadRequest(w, r, err) return } } timedLog.Infof("HTTP %s: %s (%s)", r.Method, subvol, r.URL) default: server.BadRequest(w, r, "DVID currently supports shapes of only 2 and 3 dimensions") } default: server.BadRequest(w, r, "Unrecognized API call for voxels %q. See API help.", d.DataName()) } }