func main() {
flag.Parse()
if *cpuProfile != "" {
f, err := os.Create(*cpuProfile)
if err != nil {
log.Fatal(err)
}
pprof.StartCPUProfile(f)
defer pprof.StopCPUProfile()
}
stream, _ := os.Open(flag.Arg(0))
input, _ := ioutil.ReadAll(stream)
var output string
var w wookie.Wookie
for i := 0; i < *count; i++ {
w = wookie.NewWookie(string(input))
err := w.Compute()
if err != nil {
log.Fatal(err)
}
output = w.Genome.String()
}
// only print latest output
if *graphviz {
fmt.Println(w.Graphviz())
} else {
fmt.Println(output)
}
}
func main() {
stream, _ := os.Open(os.Args[1])
input, _ := ioutil.ReadAll(stream)
wookie := wookie.NewWookie(strings.Split(strings.TrimSpace(string(input)), "\n"))
wookie.Compute()
fmt.Println(wookie.Genome.String())
}
func handler(w http.ResponseWriter, r *http.Request) {
decoder := json.NewDecoder(r.Body)
var resolveRequest ResolveRequest
err := decoder.Decode(&resolveRequest)
if err != nil {
fmt.Fprintf(w, "POST parsing error: %v\n", err)
return
}
wook := wookie.NewWookie(resolveRequest.Sequences)
// Timeout
timeout := make(chan bool, 1)
go func() {
time.Sleep(time.Second * 3)
timeout <- true
}()
computed := make(chan bool, 1)
go func() {
err = wook.Compute()
if err != nil {
fmt.Fprintf(w, "%v", err)
} else {
fmt.Fprintf(w, "%s", wook.Genome.String())
}
computed <- true
}()
select {
case <-computed:
// compute finished
case <-timeout:
fmt.Fprintf(w, "%s", "Timeout, this webapp times out after 3 seconds.\nUse the CLI version if you need to compute bigger genomes.\n\n https://github.com/moul/wookie\n")
}
}
