func (this *BreachDepressions) Run() {
// cfg := profile.Config{
// CPUProfile: true,
// NoShutdownHook: true, // do not hook SIGINT
// ProfilePath: "/Users/johnlindsay/Documents/",
// }
// //profile.Config.ProfilePath("/Users/johnlindsay/Documents/")
// prf := profile.Start(&cfg)
// defer prf.Stop()
//this.postBreachFilling = false
if this.toolManager.BenchMode {
benchmarkBreachDepressions(this)
return
}
start1 := time.Now()
var progress, oldProgress, col, row, i, n int
var colN, rowN, r, c, flatindex int
numSolvedCells := 0
var dir byte
needsFilling := false
var z, zN, lowestNeighbour float64
var zTest, zN2 float64
var gc gridCell
var p int64
var breachDepth, maxPathBreachDepth float64
var numCellsInPath int32
var isPit, isEdgeCell bool
numPits := 0
numPitsSolved := 0
numUnsolvedPits := 0
numValidCells := 0
var isActive bool
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
backLink := [8]byte{5, 6, 7, 8, 1, 2, 3, 4}
//outPointer := [9]float64{0, 1, 2, 4, 8, 16, 32, 64, 128}
maxLengthOrDepthUsed := false
if this.maxDepth > 0 || this.maxLength > 0 {
maxLengthOrDepthUsed = true
}
if maxLengthOrDepthUsed && this.maxDepth == -1 {
this.maxDepth = math.MaxFloat64
}
if maxLengthOrDepthUsed && this.maxLength == -1 {
this.maxLength = math.MaxInt32
}
performConstrainedBreaching := this.constrainedBreaching
if !maxLengthOrDepthUsed && performConstrainedBreaching {
performConstrainedBreaching = false
}
//outputPointer := false
//performFlowAccumulation := false
println("Reading DEM data...")
dem, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
demConfig := dem.GetRasterConfig()
rows := dem.Rows
columns := dem.Columns
rowsLessOne := rows - 1
numCellsTotal := rows * columns
nodata := dem.NoDataValue
paletteName := demConfig.PreferredPalette
minVal := dem.GetMinimumValue()
elevDigits := len(strconv.Itoa(int(dem.GetMaximumValue() - minVal)))
elevMultiplier := math.Pow(10, float64(8-elevDigits))
SMALL_NUM := 1 / elevMultiplier * 10
POS_INF := math.Inf(1)
start2 := time.Now()
output := make([][]float64, rows+2)
pits := make([][]bool, rows+2)
inQueue := make([][]bool, rows+2)
flowdir := make([][]byte, rows+2)
for i = 0; i < rows+2; i++ {
output[i] = make([]float64, columns+2)
pits[i] = make([]bool, columns+2)
inQueue[i] = make([]bool, columns+2)
flowdir[i] = make([]byte, columns+2)
}
// output := structures.Create2dFloat64Array(rows+2, columns+2)
// pits := structures.Create2dBoolArray(rows+2, columns+2)
// inQueue := structures.Create2dBoolArray(rows+2, columns+2)
// flowdir := structures.Create2dByteArray(rows+2, columns+2)
pq := NewPQueue()
//q := NewQueue()
var floodorder []int
//floodorder := make([]int, numCellsTotal)
floodOrderTail := 0
// find the pit cells and initialize the grids
printf("\rBreaching DEM (1 of 2): %v%%", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = dem.Value(row, col)
output[row+1][col+1] = z
flowdir[row+1][col+1] = 0
if z != nodata {
isPit = true
isEdgeCell = false
lowestNeighbour = POS_INF
for n = 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
if zN != nodata && zN < z {
isPit = false
break
} else if zN == nodata {
isEdgeCell = true
} else {
if zN < lowestNeighbour {
lowestNeighbour = zN
}
}
}
if isEdgeCell {
gc = newGridCell(row+1, col+1, 0)
p = int64(int64(z*elevMultiplier) * 100000)
pq.Push(gc, p)
inQueue[row+1][col+1] = true
}
if isPit {
// if isEdgeCell { // pit on an edge
// gc = newGridCell(row+1, col+1, 0)
// p = int64(int64(z*elevMultiplier) * 100000)
// // item = &Item{
// // value: gc,
// // priority: p,
// // }
// // heap.Push(&pq, item)
// pq.Push(gc, p)
// inQueue[row+1][col+1] = true
// } else { // interior pit
if !isEdgeCell {
pits[row+1][col+1] = true
numPits++
}
/* raising a pit cell to just lower than the
* elevation of its lowest neighbour will
* reduce the length and depth of the trench
* that is necessary to eliminate the pit
* by quite a bit on average.
*/
if lowestNeighbour != POS_INF {
output[row+1][col+1] = lowestNeighbour - SMALL_NUM
}
//}
}
numValidCells++
} else {
numSolvedCells++
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rBreaching DEM (1 of 2): %v%%", progress)
oldProgress = progress
}
}
for row = 0; row < rows+2; row++ {
output[row][0] = nodata
output[row][columns+1] = nodata
flowdir[row][0] = 0
flowdir[row][columns+1] = 0
}
for col = 0; col < columns+2; col++ {
output[0][col] = nodata
output[rows+1][col] = nodata
flowdir[0][col] = 0
flowdir[rows+1][col] = 0
}
//heap.Init(&pq)
// now breach
printf("\r ")
oldProgress = int(100.0 * numSolvedCells / numCellsTotal)
printf("\rBreaching DEM (2 of 2): %v%%", oldProgress)
if !maxLengthOrDepthUsed {
// Perform a complete breaching solution; there will be no subseqent filling
for numPitsSolved < numPits {
gc = pq.Pop()
row = gc.row
col = gc.column
flatindex = gc.flatIndex
for i = 0; i < 8; i++ {
rowN = row + dY[i]
colN = col + dX[i]
zN = output[rowN][colN]
if zN != nodata && !inQueue[rowN][colN] {
flowdir[rowN][colN] = backLink[i]
if pits[rowN][colN] {
numPitsSolved++
// trace the flowpath back until you find a lower cell
zTest = zN
r = rowN
c = colN
isActive = true
for isActive {
zTest -= SMALL_NUM // ensures a small increment slope
dir = flowdir[r][c]
if dir > 0 {
r += dY[dir-1]
c += dX[dir-1]
zN2 = output[r][c]
if zN2 <= zTest || zN2 == nodata {
// a lower grid cell or edge has been found
isActive = false
} else {
output[r][c] = zTest
}
} else {
// a pit has been located, likely at the edge
isActive = false
}
}
}
numSolvedCells++
n = 0
if pits[rowN][colN] {
n = flatindex + 1
}
gc = newGridCell(rowN, colN, n)
p = int64(int64(zN*elevMultiplier)*100000 + (int64(n) % 100000))
pq.Push(gc, p)
inQueue[rowN][colN] = true
}
}
progress = int(100.0 * numSolvedCells / numCellsTotal)
if progress != oldProgress {
printf("\rBreaching DEM (2 of 2): %v%%", progress)
oldProgress = progress
}
}
} else if !performConstrainedBreaching {
// Perform selective breaching. Sinks that can be removed within the
// specified constraints of the max breach length and depth will
// be breached. Otherwise they will be removed during a subsequent
// filling operation.
floodorder = make([]int, numValidCells)
for pq.Len() > 0 { //numPitsSolved < numPits {
gc = pq.Pop()
row = gc.row
col = gc.column
if this.postBreachFilling {
//q.Push(row, col)
floodorder[floodOrderTail] = row*columns + col
floodOrderTail++
}
flatindex = gc.flatIndex
for i = 0; i < 8; i++ {
rowN = row + dY[i]
colN = col + dX[i]
zN = output[rowN][colN]
if zN != nodata && !inQueue[rowN][colN] {
flowdir[rowN][colN] = backLink[i]
if pits[rowN][colN] {
numPitsSolved++
// trace the flowpath back until you find a lower cell
// or a constraint is encountered
numCellsInPath = 0
maxPathBreachDepth = 0
zTest = zN
r = rowN
c = colN
isActive = true
for isActive {
zTest -= SMALL_NUM // ensures a small increment slope
dir = flowdir[r][c]
if dir > 0 {
r += dY[dir-1]
c += dX[dir-1]
zN2 = output[r][c]
if zN2 <= zTest || zN2 == nodata {
// a lower grid cell has been found
isActive = false
} else {
breachDepth = dem.Value(r-1, c-1) - zTest
if breachDepth > maxPathBreachDepth {
maxPathBreachDepth = breachDepth
}
}
} else {
isActive = false
}
numCellsInPath++
if numCellsInPath > this.maxLength {
isActive = false
}
if maxPathBreachDepth > this.maxDepth {
isActive = false
}
}
if numCellsInPath <= this.maxLength && maxPathBreachDepth <= this.maxDepth {
// breach it completely
zTest = zN
r = rowN
c = colN
isActive = true
for isActive {
zTest -= SMALL_NUM // ensures a small increment slope
dir = flowdir[r][c]
if dir > 0 {
r += dY[dir-1]
c += dX[dir-1]
zN2 = output[r][c]
if zN2 <= zTest || zN2 == nodata {
// a lower grid cell has been found
isActive = false
} else {
output[r][c] = zTest
}
} else {
isActive = false
}
}
} else {
// it will be removed by filling in the next step.
needsFilling = true
numUnsolvedPits++
}
}
numSolvedCells++
n = 0
if pits[rowN][colN] {
n = flatindex + 1
}
gc = newGridCell(rowN, colN, n)
p = int64(int64(zN*elevMultiplier)*100000 + (int64(n) % 100000))
pq.Push(gc, p)
inQueue[rowN][colN] = true
}
}
progress = int(100.0 * numSolvedCells / numCellsTotal)
if progress != oldProgress {
printf("\rBreaching DEM (2 of 2): %v%%", progress)
oldProgress = progress
}
}
} else {
// perform constrained breaching
floodorder = make([]int, numValidCells)
var outletHeight float64
var outletDist, targetDist, j int32
var zOrig float64
for pq.Len() > 0 { //numPitsSolved < numPits {
//item := heap.Pop(&pq).(*Item)
//gc = item.value
gc = pq.Pop()
row = gc.row
col = gc.column
if this.postBreachFilling {
//q.Push(row, col)
floodorder[floodOrderTail] = row*columns + col
floodOrderTail++
}
flatindex = gc.flatIndex
//z = output[row][col]
for i = 0; i < 8; i++ {
rowN = row + dY[i]
colN = col + dX[i]
zN = output[rowN][colN]
if zN != nodata && !inQueue[rowN][colN] {
flowdir[rowN][colN] = backLink[i]
if pits[rowN][colN] {
numPitsSolved++
// trace the flowpath back until you find a lower cell
// or a constraint is encountered
numCellsInPath = 0
maxPathBreachDepth = 0
zTest = zN
r = rowN
c = colN
outletHeight = -math.MaxFloat64
outletDist = 0
isActive = true
for isActive {
zTest -= SMALL_NUM // ensures a small increment slope
dir = flowdir[r][c]
if dir > 0 {
r += dY[dir-1]
c += dX[dir-1]
zN2 = output[r][c]
if zN2 <= zTest || zN2 == nodata {
// a lower grid cell has been found
isActive = false
} else {
zOrig = dem.Value(r-1, c-1)
breachDepth = zOrig - zTest
if breachDepth > maxPathBreachDepth {
maxPathBreachDepth = breachDepth
}
if zOrig > outletHeight {
outletHeight = zOrig
outletDist = numCellsInPath
}
}
} else {
isActive = false
}
numCellsInPath++
}
if numCellsInPath <= this.maxLength && maxPathBreachDepth <= this.maxDepth {
// breach it completely
zTest = zN
r = rowN
c = colN
isActive = true
for isActive {
zTest -= SMALL_NUM // ensures a small increment slope
dir = flowdir[r][c]
if dir > 0 {
r += dY[dir-1]
c += dX[dir-1]
zN2 = output[r][c]
if zN2 <= zTest || zN2 == nodata {
// a lower grid cell has been found
isActive = false
} else {
output[r][c] = zTest
}
} else {
isActive = false
}
}
} else {
// ***Constrained Breaching***
// it will be completely removed by filling in the next step...
needsFilling = true
// but in the meantime, lower the outlet as much as you can.
zTest = outletHeight - this.maxDepth
targetDist = numCellsInPath
if numCellsInPath > this.maxLength {
if outletDist < this.maxLength/2 {
targetDist = this.maxLength
} else {
targetDist = outletDist + this.maxLength/2
}
r = rowN
c = colN
for j = 0; j < targetDist; j++ {
dir = flowdir[r][c]
if dir > 0 {
r += dY[dir-1]
c += dX[dir-1]
zTest = output[r][c]
} else {
break
}
}
if outletHeight-zTest > this.maxDepth {
zTest = outletHeight - this.maxDepth
}
}
r = rowN
c = colN
isActive = true
numCellsInPath = 0
for isActive {
dir = flowdir[r][c]
if dir > 0 {
r += dY[dir-1]
c += dX[dir-1]
zN2 = output[r][c]
if zN2 <= zN || zN2 == nodata {
// a lower grid cell has been found
isActive = false
} else {
if output[r][c] > zTest {
output[r][c] = zTest
}
}
} else {
isActive = false
}
numCellsInPath++
if numCellsInPath > targetDist {
isActive = false
}
}
}
}
numSolvedCells++
n = 0
if pits[rowN][colN] {
n = flatindex + 1
}
gc = newGridCell(rowN, colN, n)
p = int64(int64(zN*elevMultiplier)*100000 + (int64(n) % 100000))
pq.Push(gc, p)
inQueue[rowN][colN] = true
}
}
progress = int(100.0 * numSolvedCells / numCellsTotal)
if progress != oldProgress {
printf("\rBreaching DEM (2 of 2): %v%%", progress)
oldProgress = progress
}
}
}
pits = nil
inQueue = nil
if needsFilling && this.postBreachFilling {
// Fill the DEM.
printf("\r ")
numSolvedCells = 0
//for q.Len() > 0 {
//row, col = q.Pop()
for c := 0; c < numValidCells; c++ {
row = floodorder[c] / columns
col = floodorder[c] % columns
if row >= 0 && col >= 0 {
z = output[row][col]
dir = flowdir[row][col]
if dir > 0 {
rowN = row + dY[dir-1]
colN = col + dX[dir-1]
zN = output[rowN][colN]
if zN != nodata {
if z <= zN+SMALL_NUM {
output[row][col] = zN + SMALL_NUM
}
}
}
}
numSolvedCells++
progress = int(100.0 * numSolvedCells / numValidCells)
if progress != oldProgress {
printf("\rFilling DEM: %v%%", progress)
oldProgress = progress
}
}
}
// output the data
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = paletteName
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
displayMin := demConfig.DisplayMinimum
displayMax := demConfig.DisplayMaximum
config.CoordinateRefSystemWKT = demConfig.CoordinateRefSystemWKT
config.EPSGCode = demConfig.EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
dem.North, dem.South, dem.East, dem.West, config)
if err != nil {
panic("Failed to write raster")
}
printf("\nSaving DEM data...\n")
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = output[row+1][col+1]
rout.SetValue(row, col, z)
}
}
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by BreachDepressions tool"))
rout.AddMetadataEntry(fmt.Sprintf("Max breach depth: %v", this.maxDepth))
rout.AddMetadataEntry(fmt.Sprintf("Max breach length: %v", this.maxLength))
rout.AddMetadataEntry(fmt.Sprintf("Constrained Breaching: %v", this.constrainedBreaching))
config.DisplayMinimum = displayMin
config.DisplayMaximum = displayMax
rout.SetRasterConfig(config)
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
if numUnsolvedPits > 0 {
printf("Num. of unbreached pits/flats: %v (%f%% of total)\n", numUnsolvedPits, (100.0 * float64(numUnsolvedPits) / float64(numSolvedCells)))
} else {
println("All pits/flats were resolved by breaching")
}
}
func (this *Aspect) Run() {
start1 := time.Now()
var progress, oldProgress int
println("Reading raster data...")
rin, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
start2 := time.Now()
rows := rin.Rows
columns := rin.Columns
rowsLessOne := rows - 1
nodata := rin.NoDataValue
inConfig := rin.GetRasterConfig()
gridRes := (rin.GetCellSizeX() + rin.GetCellSizeY()) / 2.0
eightGridRes := 8 * gridRes
const radToDeg float64 = 180.0 / math.Pi
rin.GetRasterConfig()
// create the output raster
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = "circular_bw.pal"
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = nodata
config.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config.EPSGCode = inConfig.EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config)
if err != nil {
println("Failed to write raster")
return
}
zConvFactor := 1.0
if rin.IsInGeographicCoordinates() {
// calculate a new z-conversion factor
midLat := (rin.North - rin.South) / 2.0
if midLat <= 90 && midLat >= -90 {
zConvFactor = 1.0 / (113200 * math.Cos(math.Pi/180.0*midLat))
}
}
numCPUs := runtime.NumCPU()
c1 := make(chan bool)
runtime.GOMAXPROCS(numCPUs)
var wg sync.WaitGroup
// calculate aspect
printf("\r ")
printf("\rProgress: %v%%", 0)
//var numSolvedCells int = 0
startingRow := 0
rowBlockSize := rows / numCPUs
k := 0
for startingRow < rows {
endingRow := startingRow + rowBlockSize
if endingRow >= rows {
endingRow = rows - 1
}
wg.Add(1)
go func(rowSt, rowEnd, k int) {
defer wg.Done()
var z, zN, fy, fx, value float64
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
N := [8]float64{}
for row := rowSt; row <= rowEnd; row++ {
floatData := make([]float64, columns)
for col := 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
z = z * zConvFactor
for n := 0; n < 8; n++ {
zN = rin.Value(row+dY[n], col+dX[n])
if zN != nodata {
N[n] = zN * zConvFactor
} else {
N[n] = z
}
}
fy = (N[6] - N[4] + 2*(N[7]-N[3]) + N[0] - N[2]) / eightGridRes
fx = (N[2] - N[4] + 2*(N[1]-N[5]) + N[0] - N[6]) / eightGridRes
if fx != 0 {
value = 180 - math.Atan(fy/fx)*radToDeg + 90*(fx/math.Abs(fx))
floatData[col] = value
} else {
floatData[col] = -1.0
}
} else {
floatData[col] = nodata
}
}
rout.SetRowValues(row, floatData)
c1 <- true // row completed
}
}(startingRow, endingRow, k)
startingRow = endingRow + 1
k++
}
oldProgress = 0
for rowsCompleted := 0; rowsCompleted < rows; rowsCompleted++ {
<-c1 // a row has successfully completed
progress = int(100.0 * float64(rowsCompleted) / float64(rowsLessOne))
if progress != oldProgress {
printf("\rProgress: %v%%", progress)
oldProgress = progress
}
}
wg.Wait()
printf("\r ")
printf("\rSaving data...\n")
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by Slope"))
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
/* This function is only used to benchmark the BreachDepressions tool.
It can be called by running the tool in 'benchon' mode. The tool is run
10 times and elapsed times do not include disk I/O. No output file
is created.
*/
func benchmarkFillDepressions(parent *FillDepressions) {
println("Benchmarking FillDepressions...")
var progress, oldProgress, col, row, i, n int
var colN, rowN, flatindex int
numSolvedCells := 0
var z, zN float64
var gc gridCell
var p int64
var isEdgeCell bool
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
println("Reading DEM data...")
dem, err := raster.CreateRasterFromFile(parent.inputFile)
if err != nil {
println(err.Error())
}
rows := dem.Rows
columns := dem.Columns
rowsLessOne := rows - 1
numCellsTotal := rows * columns
nodata := dem.NoDataValue
demConfig := dem.GetRasterConfig()
paletteName := demConfig.PreferredPalette
// output the data
// make a copy of the dem's raster configuration
//config := dem.GetRasterConfig()
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = paletteName
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = nodata
displayMin := demConfig.DisplayMinimum
displayMax := demConfig.DisplayMaximum
config.DisplayMinimum = displayMin
config.DisplayMaximum = displayMax
config.CoordinateRefSystemWKT = demConfig.CoordinateRefSystemWKT
config.EPSGCode = demConfig.EPSGCode
value := fmt.Sprintf("Created on %s\n", time.Now().Local())
config.MetadataEntries = append(config.MetadataEntries, value)
rout, err := raster.CreateNewRaster(parent.outputFile, rows, columns,
dem.North, dem.South, dem.East, dem.West, config)
if err != nil {
panic("Failed to write raster")
}
minVal := dem.GetMinimumValue()
elevDigits := len(strconv.Itoa(int(dem.GetMaximumValue() - minVal)))
elevMultiplier := math.Pow(10, float64(8-elevDigits))
SMALL_NUM := 1 / elevMultiplier
if !parent.fixFlats {
SMALL_NUM = 0
}
println("The tool will now be run 10 times...")
var benchTimes [10]time.Duration
for bt := 0; bt < 10; bt++ {
println("Run", (bt + 1), "...")
startTime := time.Now()
// Fill the DEM.
inQueue := make([][]bool, rows+2)
for i = 0; i < rows+2; i++ {
inQueue[i] = make([]bool, columns+2)
}
// Reinitialize the priority queue and flow direction grid.
numSolvedCells = 0
//pq := make(PriorityQueue, 0)
pq := NewPQueue()
// find the pit cells and initialize the grids
printf("\r ")
printf("\rFilling DEM (1 of 2): %v%%", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = dem.Value(row, col)
if z != nodata {
//isPit = true
isEdgeCell = false
for n = 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
if zN == nodata {
isEdgeCell = true
}
}
if isEdgeCell {
gc = newGridCell(row, col, 0)
p = int64(int64(zN*elevMultiplier) * 100000)
pq.Push(gc, p)
inQueue[row+1][col+1] = true
rout.SetValue(row, col, z)
numSolvedCells++
}
} else {
numSolvedCells++
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rFilling DEM (1 of 2): %v%%", progress)
oldProgress = progress
}
}
printf("\r ")
oldProgress = -1
for pq.Len() > 0 {
gc = pq.Pop()
row = gc.row
col = gc.column
flatindex = gc.flatIndex
z = rout.Value(row, col)
for i = 0; i < 8; i++ {
rowN = row + dY[i]
colN = col + dX[i]
zN = dem.Value(rowN, colN)
if zN != nodata && !inQueue[rowN+1][colN+1] {
n = 0
if zN <= z {
zN = z + SMALL_NUM
n = flatindex + 1
}
numSolvedCells++
rout.SetValue(rowN, colN, zN)
gc = newGridCell(rowN, colN, n)
p = int64(int64(zN*elevMultiplier)*100000 + (int64(n) % 100000))
pq.Push(gc, p)
inQueue[rowN+1][colN+1] = true
}
}
progress = int(100.0 * numSolvedCells / numCellsTotal)
if progress != oldProgress {
printf("\rFilling DEM (2 of 2): %v%%", progress)
oldProgress = progress
}
}
benchTimes[bt] = time.Since(startTime)
printf(" Elapsed time (s): %v\n", benchTimes[bt].Seconds())
}
println("")
println("Elapsed times (in sec.) of the 10 runs:")
avgVal := 0.0
for i := 0; i < 10; i++ {
println(benchTimes[i].Seconds())
avgVal += benchTimes[i].Seconds()
}
println("Average Time: ", avgVal/10.0)
println("Operation complete!")
}
func (this *Whitebox2GeoTiff) Run() {
// check that the input raster is in Whitebox GAT format
rasterType, err := raster.DetermineRasterFormat(this.inputFile)
if rasterType != raster.RT_WhiteboxRaster || err != nil {
println("The input file is not of a Whitebox GAT format.")
return
}
input, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
// get the input config
inConfig := input.GetRasterConfig()
// get the number of rows and columns
rows := input.Rows
columns := input.Columns
rowsLessOne := rows - 1
inNodata := input.NoDataValue
// check that the specified output file is in GeoTiff format
rasterType, err = raster.DetermineRasterFormat(this.outputFile)
if rasterType != raster.RT_GeoTiff || err != nil {
println("Warning: The specified output file name is not of a GeoTIFF format.\nThe file name has been modified")
index := strings.LastIndex(this.outputFile, ".")
extension := this.outputFile[index:len(this.outputFile)]
newFileName := strings.Replace(this.outputFile, extension, ".tif", -1)
this.outputFile = newFileName
}
// output the data
outConfig := raster.NewDefaultRasterConfig()
outConfig.DataType = inConfig.DataType
outConfig.EPSGCode = inConfig.EPSGCode
//outConfig.NoDataValue = inConfig.NoDataValue
outConfig.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
output, err := raster.CreateNewRaster(this.outputFile, input.Rows, input.Columns,
input.North, input.South, input.East, input.West, outConfig)
outNodata := output.NoDataValue
if err != nil {
println(err.Error())
}
var progress, oldProgress int
var z float64
oldProgress = -1
for row := 0; row < rows; row++ {
for col := 0; col < columns; col++ {
z = input.Value(row, col)
if z != inNodata {
output.SetValue(row, col, z)
} else {
output.SetValue(row, col, outNodata)
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rProgress: %v%%", progress)
oldProgress = progress
}
}
output.Save()
println("\nOperation complete!")
}
func (this *DeviationFromMean) Run() {
start1 := time.Now()
var progress, oldProgress, col, row int
var z, sum, sumSqr float64
var sumN, N int
var x1, x2, y1, y2 int
var outValue, v, s, m float64
println("Reading raster data...")
rin, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
rows := rin.Rows
columns := rin.Columns
rowsLessOne := rows - 1
nodata := rin.NoDataValue
inConfig := rin.GetRasterConfig()
minValue := rin.GetMinimumValue()
maxValue := rin.GetMaximumValue()
valueRange := maxValue - minValue
k := minValue + valueRange/2.0
start2 := time.Now()
I := make([][]float64, rows)
I2 := make([][]float64, rows)
IN := make([][]int, rows)
for row = 0; row < rows; row++ {
I[row] = make([]float64, columns)
I2[row] = make([]float64, columns)
IN[row] = make([]int, columns)
}
// calculate the integral image
printf("\rCalculating integral image (1 of 2): %v%%\n", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
sum = 0
sumSqr = 0
sumN = 0
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z == nodata {
z = 0
} else {
z = z - k
sumN++
}
sum += z
sumSqr += z * z
if row > 0 {
I[row][col] = sum + I[row-1][col]
I2[row][col] = sumSqr + I2[row-1][col]
IN[row][col] = sumN + IN[row-1][col]
} else {
I[row][col] = sum
I2[row][col] = sumSqr
IN[row][col] = sumN
}
}
progress = int(100.0 * row / rowsLessOne)
if progress%5 == 0 && progress != oldProgress {
printf("\rCalculating integral image (1 of 2): %v%%\n", progress)
oldProgress = progress
}
}
// output the data
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = "blue_white_red.plt"
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = nodata
config.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config.EPSGCode = inConfig.EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config)
if err != nil {
println("Failed to write raster")
return
}
printf("\rPerforming analysis (2 of 2): %v%%\n", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
y1 = row - this.neighbourhoodSize
if y1 < 0 {
y1 = 0
}
if y1 >= rows {
y1 = rows - 1
}
y2 = row + this.neighbourhoodSize
if y2 < 0 {
y2 = 0
}
if y2 >= rows {
y2 = rows - 1
}
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
x1 = col - this.neighbourhoodSize
if x1 < 0 {
x1 = 0
}
if x1 >= columns {
x1 = columns - 1
}
x2 = col + this.neighbourhoodSize
if x2 < 0 {
x2 = 0
}
if x2 >= columns {
x2 = columns - 1
}
N = IN[y2][x2] + IN[y1][x1] - IN[y1][x2] - IN[y2][x1]
if N > 0 {
sum = I[y2][x2] + I[y1][x1] - I[y1][x2] - I[y2][x1]
sumSqr = I2[y2][x2] + I2[y1][x1] - I2[y1][x2] - I2[y2][x1]
v = (sumSqr - (sum*sum)/float64(N)) / float64(N)
if v > 0 {
s = math.Sqrt(v)
m = sum / float64(N)
outValue = ((z - k) - m) / s
rout.SetValue(row, col, outValue)
} else {
rout.SetValue(row, col, 0)
}
} else {
rout.SetValue(row, col, 0)
}
}
}
progress = int(100.0 * row / rowsLessOne)
if progress%5 == 0 && progress != oldProgress {
printf("\rPerforming analysis (2 of 2): %v%%\n", progress)
oldProgress = progress
}
}
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by DeviationFromMean tool"))
rout.AddMetadataEntry(fmt.Sprintf("Window size: %v", (this.neighbourhoodSize*2 + 1)))
config.DisplayMinimum = -2.58
config.DisplayMaximum = 2.58
rout.SetRasterConfig(config)
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *BreachStreams) Run() {
start1 := time.Now()
var progress, oldProgress, col, row, i, n int
var colN, rowN, r, c, flatindex int
numSolvedCells := 0
var dir byte
var z, zN, lowestNeighbour, s, sN float64
var zTest, zN2, zN3 float64
var gc gridCell
var p int64
var isPit, isEdgeCell, isStream bool
numPits := 0
numPitsSolved := 0
numUnsolvedPits := 0
numValidCells := 0
var isActive bool
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
backLink := [8]byte{5, 6, 7, 8, 1, 2, 3, 4}
println("Reading input data...")
dem, err := raster.CreateRasterFromFile(this.demFile)
if err != nil {
println(err.Error())
}
demConfig := dem.GetRasterConfig()
rows := dem.Rows
columns := dem.Columns
rowsLessOne := rows - 1
numCellsTotal := rows * columns
nodata := dem.NoDataValue
paletteName := demConfig.PreferredPalette
minVal := dem.GetMinimumValue()
elevDigits := len(strconv.Itoa(int(dem.GetMaximumValue() - minVal)))
elevMultiplier := math.Pow(10, float64(8-elevDigits))
SMALL_NUM := 1 / elevMultiplier * 10
POS_INF := math.Inf(1)
streams, err := raster.CreateRasterFromFile(this.streamFile)
if err != nil {
println(err.Error())
}
if streams.Rows != rows || streams.Columns != columns {
println("The input rasters must be of the same dimensions.")
return
}
streamsNodata := streams.NoDataValue
start2 := time.Now()
output := make([][]float64, rows+2)
pits := make([][]bool, rows+2)
inQueue := make([][]bool, rows+2)
flowdir := make([][]byte, rows+2)
for i = 0; i < rows+2; i++ {
output[i] = make([]float64, columns+2)
pits[i] = make([]bool, columns+2)
inQueue[i] = make([]bool, columns+2)
flowdir[i] = make([]byte, columns+2)
}
pq := NewPQueue()
// oldProgress = 0
// for row = 0; row < rows; row++ {
// for col = 0; col < columns; col++ {
// z = dem.Value(row, col)
// output[row+1][col+1] = z
// flowdir[row+1][col+1] = 0
// if z != nodata {
// s = streams.Value(row, col)
// if s != streamsNodata && s > 0 {
// lowestNeighbour = POS_INF
// for n = 0; n < 8; n++ {
// sN = streams.Value(row+dY[n], col+dX[n])
// if sN != streamsNodata && sN > 0 {
// zN = dem.Value(row+dY[n], col+dX[n])
// if zN < lowestNeighbour {
// lowestNeighbour = zN
// }
// }
// }
// if lowestNeighbour < z {
// output[row+1][col+1] = lowestNeighbour - SMALL_NUM
// }
// }
// }
// }
// progress = int(100.0 * row / rowsLessOne)
// if progress != oldProgress {
// printf("\rBreaching DEM (1 of 3): %v%%", progress)
// oldProgress = progress
// }
// }
// find the pit cells and initialize the grids
printf("\rBreaching DEM (1 of 2): %v%%", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = dem.Value(row, col)
output[row+1][col+1] = z
flowdir[row+1][col+1] = 0
//z = output[row+1][col+1]
if z != nodata {
isPit = true
isEdgeCell = false
lowestNeighbour = POS_INF
s = streams.Value(row, col)
if s != streamsNodata && s > 0 {
isStream = true
} else {
isStream = false
}
for n = 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
//zN = output[row+dY[n]+1][col+dX[n]+1]
sN = streams.Value(row+dY[n], col+dX[n])
if zN != nodata && zN < z { // there's a lower cell
if !isStream {
isPit = false
//break
} else {
if sN != streamsNodata && sN > 0 { // there's a lower stream cell; it's not a stream pit
isPit = false
//break
}
}
} else if zN == nodata {
isEdgeCell = true
} else {
if zN < lowestNeighbour {
lowestNeighbour = zN
}
}
}
if isEdgeCell {
gc = newGridCell(row+1, col+1, 0)
if isStream {
p = int64(int64(z*elevMultiplier) * 10000)
// given their much higher priorities, stream cells will always
// be visited before non-stream cells when they are present
// in the queue.
} else {
p = int64(10000000000000 + int64(z*elevMultiplier)*10000)
}
pq.Push(gc, p)
inQueue[row+1][col+1] = true
}
if isPit {
if !isEdgeCell {
pits[row+1][col+1] = true
numPits++
}
/* raising a pit cell to just lower than the
* elevation of its lowest neighbour will
* reduce the length and depth of the trench
* that is necessary to eliminate the pit
* by quite a bit on average.
*/
if lowestNeighbour != POS_INF && !isStream { // this shouldn't be done for stream cells
output[row+1][col+1] = lowestNeighbour - SMALL_NUM
}
//}
}
numValidCells++
} else {
numSolvedCells++
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rBreaching DEM (1 of 2): %v%%", progress)
oldProgress = progress
}
}
for row = 0; row < rows+2; row++ {
output[row][0] = nodata
output[row][columns+1] = nodata
flowdir[row][0] = 0
flowdir[row][columns+1] = 0
}
for col = 0; col < columns+2; col++ {
output[0][col] = nodata
output[rows+1][col] = nodata
flowdir[0][col] = 0
flowdir[rows+1][col] = 0
}
// now breach
printf("\r ")
oldProgress = int(100.0 * numSolvedCells / numCellsTotal)
printf("\rBreaching DEM (2 of 2): %v%%", oldProgress)
// Perform a complete breaching solution; there will be no subseqent filling
for numPitsSolved < numPits {
gc = pq.Pop()
row = gc.row
col = gc.column
flatindex = gc.flatIndex
// s = streams.Value(row, col)
// if s != streamsNodata && s > 0 {
// output[row+1][col+1] -= 10.0
// }
for i = 0; i < 8; i++ {
rowN = row + dY[i]
colN = col + dX[i]
zN = output[rowN][colN]
if zN != nodata && !inQueue[rowN][colN] {
flowdir[rowN][colN] = backLink[i]
if pits[rowN][colN] {
numPitsSolved++
// trace the flowpath back until you find a lower cell
zTest = zN
r = rowN
c = colN
isActive = true
for isActive {
zTest -= SMALL_NUM // ensures a small increment slope
s = streams.Value(r, c)
if s > 0 && s != streamsNodata {
// is there a neighbouring non-stream cell that is lower than zTest?
lowestNeighbour = POS_INF // this will actually be the lowest non-stream neighbour
for n = 0; n < 8; n++ {
sN = streams.Value(r+dY[n], c+dX[n])
zN3 = output[r+dY[n]][c+dX[n]]
if (sN == 0 || sN == streamsNodata) && zN3 != nodata { // it's a non-stream but valid neighbour
if zN3 < lowestNeighbour {
lowestNeighbour = zN3
}
}
}
if lowestNeighbour < zTest {
zTest = lowestNeighbour - SMALL_NUM
}
}
dir = flowdir[r][c]
if dir > 0 {
r += dY[dir-1]
c += dX[dir-1]
zN2 = output[r][c]
if zN2 <= zTest || zN2 == nodata {
// a lower grid cell or edge has been found
isActive = false
} else {
output[r][c] = zTest
}
} else {
// a pit has been located, likely at the edge
isActive = false
}
}
}
numSolvedCells++
n = 0
if pits[rowN][colN] {
n = flatindex + 1
}
gc = newGridCell(rowN, colN, n)
s = streams.Value(rowN-1, colN-1)
if s != streamsNodata && s > 0 {
isStream = true
} else {
isStream = false
}
if isStream {
p = int64(int64(zN*elevMultiplier)*10000 + (int64(n) % 10000))
} else {
p = int64(10000000000000 + int64(zN*elevMultiplier)*10000 + (int64(n) % 10000))
}
pq.Push(gc, p)
inQueue[rowN][colN] = true
}
}
progress = int(100.0 * numSolvedCells / numCellsTotal)
if progress != oldProgress {
printf("\rBreaching DEM (2 of 2): %v%%", progress)
oldProgress = progress
}
}
// output the data
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = paletteName
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
displayMin := demConfig.DisplayMinimum
displayMax := demConfig.DisplayMaximum
config.CoordinateRefSystemWKT = demConfig.CoordinateRefSystemWKT
config.EPSGCode = demConfig.EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
dem.North, dem.South, dem.East, dem.West, config)
if err != nil {
panic("Failed to write raster")
}
printf("\nSaving DEM data...\n")
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
// s = streams.Value(row, col)
// if s != streamsNodata && s > 0 && output[row+1][col+1] != nodata {
// z = output[row+1][col+1] - SMALL_NUM*2
// } else {
// z = output[row+1][col+1]
// }
z = output[row+1][col+1]
rout.SetValue(row, col, z)
}
}
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by BreachStreams tool"))
config.DisplayMinimum = displayMin
config.DisplayMaximum = displayMax
rout.SetRasterConfig(config)
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
if numUnsolvedPits > 0 {
printf("Num. of unbreached pits/flats: %v (%f%% of total)\n", numUnsolvedPits, (100.0 * float64(numUnsolvedPits) / float64(numSolvedCells)))
} else {
println("All pits/flats were resolved by breaching")
}
}
func (this *Quantiles) Run() {
start1 := time.Now()
var progress, oldProgress, col, row, i, bin int
var z float64
println("Reading raster data...")
rin, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
start2 := time.Now()
rows := rin.Rows
columns := rin.Columns
rowsLessOne := rows - 1
nodata := rin.NoDataValue
inConfig := rin.GetRasterConfig()
minValue := rin.GetMinimumValue()
maxValue := rin.GetMaximumValue()
valueRange := math.Ceil(maxValue - minValue)
println("Calculating quantiles...")
highResNumBins := 10000
highResBinSize := valueRange / float64(highResNumBins)
primaryHisto := make([]int, highResNumBins)
numValidCells := 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
bin = int(math.Floor((z - minValue) / highResBinSize))
if bin >= highResNumBins {
bin = highResNumBins - 1
}
primaryHisto[bin]++
numValidCells++
}
}
}
for i = 1; i < highResNumBins; i++ {
primaryHisto[i] += primaryHisto[i-1]
}
cdf := make([]float64, highResNumBins)
for i = 0; i < highResNumBins; i++ {
cdf[i] = 100.0 * float64(primaryHisto[i]) / float64(numValidCells)
}
quantileProportion := 100.0 / float64(this.numBins)
for i = 0; i < highResNumBins; i++ {
primaryHisto[i] = int(math.Floor(cdf[i] / quantileProportion))
if primaryHisto[i] == this.numBins {
primaryHisto[i] = this.numBins - 1
}
}
// create the output raster
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = inConfig.PreferredPalette
config.DataType = raster.DT_INT16
config.NoDataValue = nodata
config.InitialValue = nodata
config.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config.EPSGCode = inConfig.EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config)
if err != nil {
println("Failed to write raster")
return
}
printf("\r ")
oldProgress = -1
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
i = int(math.Floor((z - minValue) / highResBinSize))
if i >= highResNumBins {
i = highResNumBins - 1
}
bin = primaryHisto[i]
rout.SetValue(row, col, float64(bin+1))
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rProgress: %v%%", progress)
oldProgress = progress
}
}
printf("\r ")
printf("\rSaving data...\n")
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by Quantiles with %v bins", this.numBins))
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *FillSmallNodataHoles) Run() {
start1 := time.Now()
var progress, oldProgress, col, row int
var z, zN1, zN2 float64
println("Reading raster data...")
rin, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
start2 := time.Now()
rows := rin.Rows
columns := rin.Columns
rowsLessOne := rows - 1
nodata := rin.NoDataValue
inConfig := rin.GetRasterConfig()
// create the output raster
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = inConfig.PreferredPalette
config.DataType = inConfig.DataType
config.NoDataValue = nodata
config.InitialValue = nodata
config.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config.EPSGCode = inConfig.EPSGCode
config.DisplayMinimum = inConfig.DisplayMinimum
config.DisplayMaximum = inConfig.DisplayMaximum
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config)
if err != nil {
println("Failed to write raster")
return
}
printf("\r ")
oldProgress = -1
for row = 1; row < rows-1; row++ {
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z == nodata {
zN1 = rin.Value(row-1, col)
zN2 = rin.Value(row+1, col)
if zN1 != nodata && zN2 != nodata {
rout.SetValue(row, col, (zN1+zN2)/2.0)
}
} else {
rout.SetValue(row, col, z)
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rProgress (Loop 1 of 2): %v%%", progress)
oldProgress = progress
}
}
oldProgress = -1
for row = 0; row < rows; row++ {
for col = 1; col < columns-1; col++ {
z = rout.Value(row, col)
if z == nodata {
zN1 = rout.Value(row, col-1)
zN2 = rout.Value(row, col+1)
if zN1 != nodata && zN2 != nodata {
rout.SetValue(row, col, (zN1+zN2)/2.0)
}
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rProgress (Loop 2 of 2): %v%%", progress)
oldProgress = progress
}
}
printf("\r ")
printf("\rSaving data...\n")
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by FillSmallNodataHoles"))
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *Hillshade) Run() {
start1 := time.Now()
var progress, oldProgress int
azimuth := (315.0 - 90.0) * DegToRad
altitude := 30.0 * DegToRad
sinTheta := math.Sin(altitude)
cosTheta := math.Cos(altitude)
println("Reading raster data...")
rin, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
start2 := time.Now()
rows := rin.Rows
columns := rin.Columns
rowsLessOne := rows - 1
nodata := rin.NoDataValue
inConfig := rin.GetRasterConfig()
gridRes := (rin.GetCellSizeX() + rin.GetCellSizeY()) / 2.0
eightGridRes := 8 * gridRes
const radToDeg float64 = 180.0 / math.Pi
rin.GetRasterConfig()
// create the output raster
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = "grey.pal"
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = nodata
config.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config.EPSGCode = inConfig.EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config)
if err != nil {
println("Failed to write raster")
return
}
zConvFactor := 1.0
if rin.IsInGeographicCoordinates() {
// calculate a new z-conversion factor
midLat := (rin.North - rin.South) / 2.0
if midLat <= 90 && midLat >= -90 {
zConvFactor = 1.0 / (113200 * math.Cos(math.Pi/180.0*midLat))
}
}
numCPUs := runtime.NumCPU()
c1 := make(chan [256]int)
c2 := make(chan int)
runtime.GOMAXPROCS(numCPUs)
var wg sync.WaitGroup
// calculate hillshade
printf("\r ")
printf("\rProgress: %v%%", 0)
startingRow := 0
var rowBlockSize int = rows / numCPUs
histo := [256]int{}
numCells := 0
k := 0
for startingRow < rows {
endingRow := startingRow + rowBlockSize
if endingRow >= rows {
endingRow = rows - 1
}
wg.Add(1)
go func(rowSt, rowEnd, k int) {
defer wg.Done()
var z, zN, fy, fx, value, tanSlope, aspect, term1, term2, term3 float64
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
N := [8]float64{}
for row := rowSt; row <= rowEnd; row++ {
rowHisto := [256]int{}
rowNumCells := 0
floatData := make([]float64, columns)
for col := 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
z *= zConvFactor
for n := 0; n < 8; n++ {
zN = rin.Value(row+dY[n], col+dX[n])
if zN != nodata {
N[n] = zN * zConvFactor
} else {
N[n] = z
}
}
fy = (N[6] - N[4] + 2*(N[7]-N[3]) + N[0] - N[2]) / eightGridRes
fx = (N[2] - N[4] + 2*(N[1]-N[5]) + N[0] - N[6]) / eightGridRes
if fx != 0 {
tanSlope = math.Sqrt(fx*fx + fy*fy)
aspect = (180 - math.Atan(fy/fx)*RadToDeg + 90*(fx/math.Abs(fx))) * DegToRad
term1 = tanSlope / math.Sqrt(1+tanSlope*tanSlope)
term2 = sinTheta / tanSlope
term3 = cosTheta * math.Sin(azimuth-aspect)
z = term1 * (term2 - term3)
} else {
z = 0.5
}
value = math.Floor(z * 255)
if value < 0 {
value = 0
}
floatData[col] = value
rowHisto[int(value)]++
rowNumCells++
} else {
floatData[col] = nodata
}
}
rout.SetRowValues(row, floatData)
c1 <- rowHisto // row completed
c2 <- rowNumCells
}
}(startingRow, endingRow, k)
startingRow = endingRow + 1
k++
}
//rowHisto := [256]int64{}
oldProgress = 0
for rowsCompleted := 0; rowsCompleted < rows; rowsCompleted++ {
rowHisto := <-c1 // a row has successfully completed
for i := 0; i < 256; i++ {
histo[i] += rowHisto[i]
}
rowNumCells := <-c2
numCells += rowNumCells
progress = int(100.0 * float64(rowsCompleted) / float64(rowsLessOne))
if progress != oldProgress {
printf("\rProgress: %v%%", progress)
oldProgress = progress
}
}
wg.Wait()
// trim the display min and max values by 1%
newMin := 0.0
newMax := 0.0
targetCellNum := int(float64(numCells) * 0.01)
sum := 0
for i := 0; i < 256; i++ {
sum += histo[i]
if sum >= targetCellNum {
newMin = float64(i)
break
}
}
sum = 0
for i := 255; i >= 0; i-- {
sum += histo[i]
if sum >= targetCellNum {
newMax = float64(i)
break
}
}
printf("\r ")
printf("\rSaving data...\n")
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start2)
if newMax > newMin {
rout.SetDisplayMinimum(newMin)
rout.SetDisplayMaximum(newMax)
}
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by Slope"))
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *FillDepressions) Run() {
if this.toolManager.BenchMode {
benchmarkFillDepressions(this)
return
}
start1 := time.Now()
var progress, oldProgress, col, row, i, n int
var colN, rowN, flatindex int
numSolvedCells := 0
var z, zN float64
var gc gridCell
var p int64
var isEdgeCell bool
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
println("Reading DEM data...")
dem, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
rows := dem.Rows
columns := dem.Columns
rowsLessOne := rows - 1
numCellsTotal := rows * columns
nodata := dem.NoDataValue
demConfig := dem.GetRasterConfig()
paletteName := demConfig.PreferredPalette
// output the data
// make a copy of the dem's raster configuration
//config := dem.GetRasterConfig()
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = paletteName
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = nodata
displayMin := demConfig.DisplayMinimum
displayMax := demConfig.DisplayMaximum
config.DisplayMinimum = displayMin
config.DisplayMaximum = displayMax
config.CoordinateRefSystemWKT = demConfig.CoordinateRefSystemWKT
config.EPSGCode = demConfig.EPSGCode
value := fmt.Sprintf("Created on %s\n", time.Now().Local())
config.MetadataEntries = append(config.MetadataEntries, value)
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
dem.North, dem.South, dem.East, dem.West, config)
if err != nil {
panic("Failed to write raster")
}
minVal := dem.GetMinimumValue()
elevDigits := len(strconv.Itoa(int(dem.GetMaximumValue() - minVal)))
elevMultiplier := math.Pow(10, float64(8-elevDigits))
SMALL_NUM := 1 / elevMultiplier
if !this.fixFlats {
SMALL_NUM = 0
}
start2 := time.Now()
// Fill the DEM.
inQueue := make([][]bool, rows+2)
for i = 0; i < rows+2; i++ {
inQueue[i] = make([]bool, columns+2)
}
//inQueue := structures.Create2dBoolArray(rows+2, columns+2)
// Reinitialize the priority queue and flow direction grid.
numSolvedCells = 0
//pq := make(PriorityQueue, 0)
pq := NewPQueue()
// find the pit cells and initialize the grids
printf("\r ")
printf("\rFilling DEM (1 of 2): %v%%", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = dem.Value(row, col)
if z != nodata {
//isPit = true
isEdgeCell = false
for n = 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
if zN == nodata {
isEdgeCell = true
} // else if zN < z {
// isPit = false
//}
}
if isEdgeCell { //}&& isPit {
gc = newGridCell(row, col, 0)
p = int64(int64(zN*elevMultiplier) * 100000)
// item := &Item{
// value: gc,
// priority: p,
// }
// heap.Push(&pq, item)
pq.Push(gc, p)
inQueue[row+1][col+1] = true
rout.SetValue(row, col, z)
numSolvedCells++
}
} else {
numSolvedCells++
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rFilling DEM (1 of 2): %v%%", progress)
oldProgress = progress
}
}
//heap.Init(&pq)
printf("\r ")
oldProgress = -1
for numSolvedCells < numCellsTotal { //pq.Len() > 0 {
//item := heap.Pop(&pq).(*Item)
//gc = item.value
gc = pq.Pop()
row = gc.row
col = gc.column
flatindex = gc.flatIndex
z = rout.Value(row, col)
for i = 0; i < 8; i++ {
rowN = row + dY[i]
colN = col + dX[i]
zN = dem.Value(rowN, colN)
if zN != nodata && !inQueue[rowN+1][colN+1] {
n = 0
if zN <= z {
zN = z + SMALL_NUM
n = flatindex + 1
}
numSolvedCells++
rout.SetValue(rowN, colN, zN)
gc = newGridCell(rowN, colN, n)
p = int64(int64(zN*elevMultiplier)*100000 + (int64(n) % 100000))
// item = &Item{
// value: gc,
// priority: p,
// }
// heap.Push(&pq, item)
pq.Push(gc, p)
inQueue[rowN+1][colN+1] = true
}
}
progress = int(100.0 * numSolvedCells / numCellsTotal)
if progress != oldProgress {
printf("\rFilling DEM (2 of 2): %v%%", progress)
oldProgress = progress
}
}
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by FillDepressions tool"))
config.DisplayMinimum = displayMin
config.DisplayMaximum = displayMax
rout.SetRasterConfig(config)
rout.Save()
println("\nOperation complete!")
value = fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *MaximumElevationDeviation) Run() {
start1 := time.Now()
var progress, oldProgress, col, row int
var z, sum, sumSqr float64
var sumN, N int
var x1, x2, y1, y2 int
var outValue, v, s, m float64
var str string
println("Reading raster data...")
rin, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
rows := rin.Rows
columns := rin.Columns
rowsLessOne := rows - 1
nodata := rin.NoDataValue
inConfig := rin.GetRasterConfig()
minValue := rin.GetMinimumValue()
maxValue := rin.GetMaximumValue()
valueRange := maxValue - minValue
k := minValue + valueRange/2.0
start2 := time.Now()
I := make([][]float64, rows)
I2 := make([][]float64, rows)
IN := make([][]int, rows)
maxVal := make([][]float64, rows)
scaleVal := make([][]int, rows)
zVal := make([][]float64, rows)
for row = 0; row < rows; row++ {
I[row] = make([]float64, columns)
I2[row] = make([]float64, columns)
IN[row] = make([]int, columns)
maxVal[row] = make([]float64, columns)
scaleVal[row] = make([]int, columns)
zVal[row] = make([]float64, columns)
}
// calculate the integral image
oldProgress = -1
for row = 0; row < rows; row++ {
sum = 0
sumSqr = 0
sumN = 0
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
zVal[row][col] = z
if z == nodata {
z = 0
} else {
z = z - k
sumN++
}
sum += z
sumSqr += z * z
if row > 0 {
I[row][col] = sum + I[row-1][col]
I2[row][col] = sumSqr + I2[row-1][col]
IN[row][col] = sumN + IN[row-1][col]
} else {
I[row][col] = sum
I2[row][col] = sumSqr
IN[row][col] = sumN
}
maxVal[row][col] = -math.MaxFloat32
}
progress = int(100.0 * row / rowsLessOne)
if progress%5 == 0 && progress != oldProgress {
printf("Calculating integral image: %v%%\n", progress)
oldProgress = progress
}
}
oldProgress = -1
loopNum := 1
numLoops := int((this.maxNeighbourhood-this.minNeighbourhood)/this.neighbourhoodStep) + 1
for neighbourhood := this.minNeighbourhood; neighbourhood <= this.maxNeighbourhood; neighbourhood += this.neighbourhoodStep {
for row = 0; row < rows; row++ {
y1 = row - neighbourhood
if y1 < 0 {
y1 = 0
}
if y1 >= rows {
y1 = rows - 1
}
y2 = row + neighbourhood
if y2 < 0 {
y2 = 0
}
if y2 >= rows {
y2 = rows - 1
}
for col = 0; col < columns; col++ {
z = zVal[row][col]
if z != nodata {
x1 = col - neighbourhood
if x1 < 0 {
x1 = 0
}
if x1 >= columns {
x1 = columns - 1
}
x2 = col + neighbourhood
if x2 < 0 {
x2 = 0
}
if x2 >= columns {
x2 = columns - 1
}
N = IN[y2][x2] + IN[y1][x1] - IN[y1][x2] - IN[y2][x1]
if N > 0 {
sum = I[y2][x2] + I[y1][x1] - I[y1][x2] - I[y2][x1]
sumSqr = I2[y2][x2] + I2[y1][x1] - I2[y1][x2] - I2[y2][x1]
v = (sumSqr - (sum*sum)/float64(N)) / float64(N)
if v > 0 {
s = math.Sqrt(v)
m = sum / float64(N)
outValue = ((z - k) - m) / s
if math.Abs(outValue) > maxVal[row][col] {
maxVal[row][col] = math.Abs(outValue)
if outValue >= 0 {
//output.setValue(row, col, neighbourhood)
scaleVal[row][col] = neighbourhood
} else {
//output.setValue(row, col, -neighbourhood)
scaleVal[row][col] = -neighbourhood
}
//output2.setValue(row, col, outValue)
}
}
}
}
}
progress = int(100.0 * row / rowsLessOne)
if progress%5 == 0 && progress != oldProgress {
str = fmt.Sprintf("Loop %v of %v", loopNum, numLoops)
printf("%s: %v%%\n", str, progress)
oldProgress = progress
}
}
loopNum++
}
// output the data
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = "blue_white_red.plt"
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = nodata
config.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config.EPSGCode = inConfig.EPSGCode
rout1, err := raster.CreateNewRaster(this.magOutputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config)
if err != nil {
println("Failed to write raster")
return
}
config2 := raster.NewDefaultRasterConfig()
config2.PreferredPalette = "blue_white_red.plt"
config2.DataType = raster.DT_FLOAT32
config2.NoDataValue = nodata
config2.InitialValue = nodata
config2.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config2.EPSGCode = inConfig.EPSGCode
rout2, err := raster.CreateNewRaster(this.scaleOutputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config2)
if err != nil {
println("Failed to write raster")
return
}
config.DisplayMinimum = -3.0
config.DisplayMaximum = 3.0
config2.PreferredPalette = "imhof1.plt"
rout2.SetRasterConfig(config2)
println("Saving the outputs...")
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
if maxVal[row][col] > -math.MaxFloat32 {
if scaleVal[row][col] >= 0 {
rout1.SetValue(row, col, maxVal[row][col])
rout2.SetValue(row, col, float64(scaleVal[row][col]))
} else {
rout1.SetValue(row, col, -maxVal[row][col])
rout2.SetValue(row, col, float64(-scaleVal[row][col]))
}
}
}
}
rout1.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start2)
rout1.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout1.AddMetadataEntry(fmt.Sprintf("Created by ElevationPercentile tool"))
rout1.AddMetadataEntry(fmt.Sprintf("Min. window size: %v", (this.minNeighbourhood*2 + 1)))
rout1.AddMetadataEntry(fmt.Sprintf("Max. window size: %v", (this.maxNeighbourhood*2 + 1)))
rout1.AddMetadataEntry(fmt.Sprintf("Step size: %v", this.neighbourhoodStep))
rout2.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
rout2.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout2.AddMetadataEntry(fmt.Sprintf("Created by ElevationPercentile tool"))
rout2.AddMetadataEntry(fmt.Sprintf("Min. window size: %v", (this.minNeighbourhood*2 + 1)))
rout2.AddMetadataEntry(fmt.Sprintf("Max. window size: %v", (this.maxNeighbourhood*2 + 1)))
rout2.AddMetadataEntry(fmt.Sprintf("Step size: %v", this.neighbourhoodStep))
overallTime := time.Since(start1)
rout1.SetRasterConfig(config)
rout1.Save()
rout2.SetRasterConfig(config2)
rout2.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *D8FlowAccumulation) Run() {
start1 := time.Now()
var z, zN, slope, maxSlope float64
var progress, oldProgress, col, row, r, c, i, n int
var dir int8
//var b int8
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
//inflowingVals := [8]int8{5, 6, 7, 8, 1, 2, 3, 4}
println("Reading DEM data...")
dem, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
rows := dem.Rows
columns := dem.Columns
rowsLessOne := rows - 1
nodata := dem.NoDataValue
cellSizeX := dem.GetCellSizeX()
cellSizeY := dem.GetCellSizeY()
diagDist := math.Sqrt(cellSizeX*cellSizeX + cellSizeY*cellSizeY)
dist := [8]float64{diagDist, cellSizeX, diagDist, cellSizeY, diagDist, cellSizeX, diagDist, cellSizeY}
println("Calculating pointer grid...")
flowdir := make([][]int8, rows+2)
numInflowing := make([][]int8, rows+2)
for i = 0; i < rows+2; i++ {
flowdir[i] = make([]int8, columns+2)
numInflowing[i] = make([]int8, columns+2)
}
// calculate flow directions
printf("\r ")
printf("\rLoop (1 of 3): %v%%", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = dem.Value(row, col)
flowdir[row+1][col+1] = 0
// numInflowing[row+1][col+1] = 0
if z != nodata {
maxSlope = math.Inf(-1)
for n = 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
if zN != nodata {
slope = (z - zN) / dist[n]
if slope > maxSlope {
maxSlope = slope
dir = int8(n) + 1
}
}
}
if maxSlope > 0 {
flowdir[row+1][col+1] = dir
// increment the number of inflowing cells for the downslope receiver
c = col + dX[dir-1] + 1
r = row + dY[dir-1] + 1
numInflowing[r][c]++
} else {
flowdir[row+1][col+1] = 0
}
} else {
numInflowing[row+1][col+1] = 0
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rLoop (1 of 3): %v%%", progress)
oldProgress = progress
}
}
// calculate the number of inflowing neighbours and initialize the flow queue
// with cells with no inflowing neighbours
fq := newFlowQueue()
//fq := newQueue(rows * columns / 2)
numSolvedCells := 0
println("")
println("Calculating the number of inflow neighbours...")
printf("\r ")
printf("\rLoop (2 of 3): %v%%", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = dem.Value(row, col)
if z != nodata {
if numInflowing[row+1][col+1] == 0 {
fq.push(row, col)
}
} else {
numSolvedCells++
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rLoop (2 of 3): %v%%", progress)
oldProgress = progress
}
}
// create the output file
config := raster.NewDefaultRasterConfig() //dem.GetRasterConfig()
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = 1
config.PreferredPalette = "blueyellow.pal"
config.CoordinateRefSystemWKT = dem.GetRasterConfig().CoordinateRefSystemWKT
config.EPSGCode = dem.GetRasterConfig().EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
dem.North, dem.South, dem.East, dem.West, config)
if err != nil {
panic("Failed to write raster")
}
// perform the flow accumlation
println("")
println("Performing the flow accumulation...")
numCellsTotal := rows * columns
oldProgress = -1
for fq.count > 0 {
row, col = fq.pop()
z = rout.Value(row, col)
//value to send to it's neighbour
//find it's downslope neighbour
dir = flowdir[row+1][col+1]
if dir > 0 {
col += dX[dir-1]
row += dY[dir-1]
r = row + 1
c = col + 1
//update the output grids
zN = rout.Value(row, col)
rout.SetValue(row, col, zN+z)
numInflowing[r][c]--
//see if you can progress further downslope
if numInflowing[r][c] == 0 {
//numInflowing[r][c] = -1
fq.push(row, col)
}
}
numSolvedCells++
progress = int(100.0 * numSolvedCells / numCellsTotal)
if progress != oldProgress {
printf("\rLoop (3 of 3): %v%%", progress)
oldProgress = progress
}
}
// // perform the flow accumulation
// println("")
// println("Performing the flow accumulation...")
// printf("\r ")
// printf("\rLoop (3 of 3): %v%%", 0)
// var trace bool
// oldProgress = 0
// for row = 0; row < rows; row++ {
// for col = 0; col < columns; col++ {
// z = dem.Value(row, col)
// if z != nodata {
// r = row + 1
// c = col + 1
// if numInflowing[r][c] == 0 {
// numInflowing[r][c] = -1
// trace = true
// for trace {
// z = rout.Value(r-1, c-1)
// //value to send to it's neighbour
// //find it's downslope neighbour
// dir = flowdir[r][c]
// if dir > 0 {
// c += dX[dir-1]
// r += dY[dir-1]
// //update the output grids
// zN = rout.Value(r-1, c-1)
// rout.SetValue(r-1, c-1, zN+z)
// numInflowing[r][c]--
// //see if you can progress further downslope
// if numInflowing[r][c] == 0 {
// numInflowing[r][c] = -1
// trace = true
// } else {
// trace = false
// }
// } else {
// trace = false
// }
// }
// }
// } else {
// rout.SetValue(row, col, nodata)
// }
// }
// progress = int(100.0 * row / rowsLessOne)
// if progress != oldProgress {
// printf("\rLoop (3 of 3): %v%%", progress)
// oldProgress = progress
// }
// }
if this.lnTransform {
println("")
printf("\r ")
printf("\rTransforming output: %v%%", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = rout.Value(row, col)
if z != nodata {
rout.SetValue(row, col, math.Log(z))
}
}
progress = int(100.0 * row / rowsLessOne)
if progress != oldProgress {
printf("\rTransforming output: %v%%", progress)
oldProgress = progress
}
}
}
println("\nSaving data...")
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start1)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by D8FlowAccumulation tool"))
rout.Save()
println("Operation complete!")
//value = fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
//println(value)
overallTime := time.Since(start1)
value := fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *FD8FlowAccum) Run() {
start1 := time.Now()
//var z, zN float64
var progress, oldProgress int
var col, row int
//power := 2.0
println("Reading DEM data...")
dem, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
rows := dem.Rows
columns := dem.Columns
nodata := dem.NoDataValue
println("Calculating pointer grid...")
numCPUs := runtime.NumCPU()
if numCPUs > 1 && this.parallel {
numInflowing := structures.NewParallelRectangularArrayByte(rows, columns)
//numInflowing := structures.NewRectangularArrayByte(rows, columns)
outputData := structures.NewParallelRectangularArrayFloat64(rows, columns, nodata)
//outputData := structures.NewRectangularArrayFloat64(rows, columns, nodata)
//outputData.InitializeWithConstant(1.0)
// parallel stuff
println("Num CPUs:", numCPUs)
c1 := make(chan bool)
//c2 := make(chan bool)
runtime.GOMAXPROCS(numCPUs)
var wg sync.WaitGroup
qg := NewQueueGroup(numCPUs)
// go func(rows, columns) {
// numCells := rows * columns
// progress, oldProgress := 0, -1
// numCellsCompleted := 0
// for numCellsCompleted < numCells {
// <-c2
// numCellsCompleted += increment
// if report {
// progress = int(100.0 * float64(numCellsCompleted) / float64(numCells))
// if progress != oldProgress {
// printf("\rLoop (2 of 2): %v%%", progress)
// oldProgress = progress
// }
// }
// }
// }(rows, columns)
// calculate flow directions
printf("\r ")
printf("\rLoop (1 of 2): %v%%", 0)
//var numSolvedCells int = 0
startingRow := 0
var rowBlockSize int = rows / numCPUs
k := 0
for startingRow < rows {
endingRow := startingRow + rowBlockSize
if endingRow >= rows {
endingRow = rows - 1
}
wg.Add(1)
go func(rowSt, rowEnd, k int) {
defer wg.Done()
var z, zN float64
var j byte
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
for row := rowSt; row <= rowEnd; row++ {
byteData := make([]byte, columns)
floatData := make([]float64, columns)
for col := 0; col < columns; col++ {
z = dem.Value(row, col)
if z != nodata {
j = 0
for n := 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
if zN > z && zN != nodata {
j++
}
}
byteData[col] = j
//numInflowing.SetValue(row, col, j)
if j == 0 {
qg.push(row, col, k)
}
floatData[col] = 1.0
} else {
//c2 <- true // update the number of solved cells
//outputData.SetValue(row, col, nodata)
floatData[col] = nodata
}
}
numInflowing.SetRowData(row, byteData)
outputData.SetRowData(row, floatData)
c1 <- true // row completed
}
}(startingRow, endingRow, k)
startingRow = endingRow + 1
k++
}
oldProgress = -1
rowsLessOne := rows - 1
for rowsCompleted := 0; rowsCompleted < rows; rowsCompleted++ {
<-c1 // a row has successfully completed
progress = int(100.0 * float64(rowsCompleted) / float64(rowsLessOne))
if progress != oldProgress {
printf("\rLoop (1 of 2): %v%%", progress)
oldProgress = progress
}
}
wg.Wait()
// create the output file
config := raster.NewDefaultRasterConfig() //dem.GetRasterConfig()
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = 1
config.PreferredPalette = "blueyellow.pal"
config.CoordinateRefSystemWKT = dem.GetRasterConfig().CoordinateRefSystemWKT
config.EPSGCode = dem.GetRasterConfig().EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
dem.North, dem.South, dem.East, dem.West, config)
if err != nil {
panic("Failed to write raster")
}
// perform the flow accumlation
//var numSolvedCells int32 = 0
println("")
println("Performing the flow accumulation...")
for k := 0; k < numCPUs; k++ {
wg.Add(1)
go func(k int) {
defer wg.Done()
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
//var numCellsTotal float64 = float64(rows * columns)
var faValue float64
var totalWeights float64
//var progress, oldProgress int = 0, -1
var z, zN float64
var col, row, r, c, n int
power := 2.0
for qg.length(k) > 0 {
row, col = qg.pop(k)
z = dem.Value(row, col)
faValue = outputData.Value(row, col)
// calculate the weights
totalWeights = 0
weights := [8]float64{0, 0, 0, 0, 0, 0, 0, 0}
downslope := [8]bool{false, false, false, false, false, false, false, false}
for n = 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
if zN < z && zN != nodata {
weights[n] = math.Pow(z-zN, power)
totalWeights += weights[n]
downslope[n] = true
}
}
// now perform the neighbour accumulation
for n = 0; n < 8; n++ {
r = row + dY[n]
c = col + dX[n]
//zN = dem.Value(r, c)
if downslope[n] {
outputData.Increment(r, c, faValue*(weights[n]/totalWeights))
p := numInflowing.DecrementAndReturn(r, c, 1.0)
//see if you can progress further downslope
if p == 0 {
qg.push(r, c, k)
}
}
}
//c2 <- true
// atomic.AddInt32(&numSolvedCells, 1)
// progress = int(100.0 * float64(numSolvedCells) / numCellsTotal)
// if progress != oldProgress {
// printf("\rLoop (2 of 2): %v%%", progress)
// oldProgress = progress
// }
}
}(k)
}
// oldProgress = -1
// for rowsCompleted := 0; rowsCompleted < rows; rowsCompleted++ {
// <-c1 // a row has successfully completed
// progress = int(100.0 * float64(rowsCompleted) / float64(rowsLessOne))
// if progress != oldProgress {
// printf("\rLoop (1 of 2): %v%%", progress)
// oldProgress = progress
// }
// }
wg.Wait()
if this.lnTransform {
println("")
printf("\r ")
printf("\rTransforming output: %v%%", 0)
oldProgress = 0
//var z float64
var rowsLessOne int32 = int32(rows - 1)
for row = 0; row < rows; row++ {
floatData := outputData.GetRowData(row)
for col = 0; col < columns; col++ {
//z = rout.Value(row, col)
//z = outputData.Value(row, col)
if floatData[col] != nodata {
//rout.SetValue(row, col, math.Log(z))
rout.SetValue(row, col, math.Log(floatData[col]))
}
}
progress = int(100.0 * int32(row) / rowsLessOne)
if progress != oldProgress {
printf("\rTransforming output: %v%%", progress)
oldProgress = progress
}
}
} else {
println("")
printf("\r ")
printf("\rOutputing data: %v%%", 0)
oldProgress = 0
//var z float64
var rowsLessOne int32 = int32(rows - 1)
for row = 0; row < rows; row++ {
floatData := outputData.GetRowData(row)
for col = 0; col < columns; col++ {
//z = rout.Value(row, col)
//z = outputData.Value(row, col)
// if floatData[col] != nodata {
// rout.SetValue(row, col, z)
// } else {
// rout.SetValue(row, col, nodata)
// }
rout.SetValue(row, col, floatData[col])
}
progress = int(100.0 * int32(row) / rowsLessOne)
if progress != oldProgress {
printf("\rOutputing data: %v%%", progress)
oldProgress = progress
}
}
}
println("\nSaving data...")
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start1)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by D8FlowAccumulation tool"))
rout.Save()
} else {
numInflowing := structures.NewRectangularArrayByte(rows, columns)
outputData := structures.NewRectangularArrayFloat64(rows, columns, nodata)
outputData.InitializeWithConstant(1.0)
q := newQueue()
// calculate flow directions
printf("\r ")
printf("\rLoop (1 of 2): %v%%", 0)
var numSolvedCells int32 = 0
var rowsCompleted int32 = 0
oldProgress = 0
var z, zN float64
var j byte
var rowsLessOne int32 = int32(rows - 1)
var progress, oldProgress int32 = 0, -1
dX := [8]int{1, 1, 1, 0, -1, -1, -1, 0}
dY := [8]int{-1, 0, 1, 1, 1, 0, -1, -1}
for row := 0; row <= rows; row++ {
for col := 0; col < columns; col++ {
z = dem.Value(row, col)
if z != nodata {
j = 0
for n := 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
if zN > z && zN != nodata {
j++
}
}
numInflowing.SetValue(row, col, j)
if j == 0 {
q.push(row, col)
}
} else {
numSolvedCells++
outputData.SetValue(row, col, nodata)
}
}
//numInflowing.SetRowData(row, byteData)
rowsCompleted++
progress = int32(100.0 * rowsCompleted / rowsLessOne)
if progress != oldProgress {
printf("\rLoop (1 of 2): %v%%", progress)
oldProgress = progress
}
}
// create the output file
config := raster.NewDefaultRasterConfig() //dem.GetRasterConfig()
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = 1
config.PreferredPalette = "blueyellow.pal"
config.CoordinateRefSystemWKT = dem.GetRasterConfig().CoordinateRefSystemWKT
config.EPSGCode = dem.GetRasterConfig().EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
dem.North, dem.South, dem.East, dem.West, config)
if err != nil {
panic("Failed to write raster")
}
// perform the flow accumlation
println("")
println("Performing the flow accumulation...")
var numCellsTotal float64 = float64(rows * columns)
var faValue float64
//var faValueN float64
var totalWeights float64
progress, oldProgress = 0, -1
var col, row, r, c, n int
power := 2.0
for q.count > 0 {
row, col = q.pop()
z = dem.Value(row, col)
//faValue = rout.Value(row, col)
faValue = outputData.Value(row, col)
// calculate the weights
totalWeights = 0
weights := [8]float64{0, 0, 0, 0, 0, 0, 0, 0}
downslope := [8]bool{false, false, false, false, false, false, false, false}
for n = 0; n < 8; n++ {
zN = dem.Value(row+dY[n], col+dX[n])
if zN < z && zN != nodata {
weights[n] = math.Pow(z-zN, power)
totalWeights += weights[n]
downslope[n] = true
}
}
// now perform the neighbour accumulation
for n = 0; n < 8; n++ {
r = row + dY[n]
c = col + dX[n]
//zN = dem.Value(r, c)
if downslope[n] {
//faValueN = rout.Value(r, c)
//faValueN = outputData.Value(r, c)
// update the output grids
//rout.SetValue(r, c, faValueN+faValue*(weights[n]/totalWeights))
outputData.Increment(r, c, faValue*(weights[n]/totalWeights))
numInflowing.Decrement(r, c)
//see if you can progress further downslope
//if numInflowing[r+1][c+1] == 0 {
if numInflowing.Value(r, c) == 0 {
//qs[k].push(r, c)
q.push(r, c)
}
}
}
numSolvedCells++
progress = int32(100.0 * float64(numSolvedCells) / numCellsTotal)
if progress != oldProgress {
printf("\rLoop (2 of 2): %v%%", progress)
oldProgress = progress
}
}
if this.lnTransform {
println("")
printf("\r ")
printf("\rTransforming output: %v%%", 0)
oldProgress = 0
var z float64
var rowsLessOne int32 = int32(rows - 1)
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
//z = rout.Value(row, col)
z = outputData.Value(row, col)
if z != nodata {
rout.SetValue(row, col, math.Log(z))
} else {
rout.SetValue(row, col, nodata)
}
}
progress = int32(100.0 * int32(row) / rowsLessOne)
if progress != oldProgress {
printf("\rTransforming output: %v%%", progress)
oldProgress = progress
}
}
} else {
println("")
printf("\r ")
printf("\rOutputing data: %v%%", 0)
oldProgress = 0
var z float64
var rowsLessOne int32 = int32(rows - 1)
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
//z = rout.Value(row, col)
z = outputData.Value(row, col)
if z != nodata {
rout.SetValue(row, col, z)
} else {
rout.SetValue(row, col, nodata)
}
}
progress = int32(100.0 * int32(row) / rowsLessOne)
if progress != oldProgress {
printf("\rOutputing data: %v%%", progress)
oldProgress = progress
}
}
}
println("\nSaving data...")
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
elapsed := time.Since(start1)
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by D8FlowAccumulation tool"))
rout.Save()
}
println("Operation complete!")
overallTime := time.Since(start1)
value := fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *DeviationFromMeanTraditional) Run() {
start1 := time.Now()
var progress, oldProgress, col, row int
var z, zN, sum, sumSqr float64
var n int
var x1, x2, y1, y2 int
var i, j int
var outValue, v, s, m float64
println("Reading raster data...")
rin, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
rows := rin.Rows
columns := rin.Columns
rowsLessOne := rows - 1
nodata := rin.NoDataValue
inConfig := rin.GetRasterConfig()
minValue := rin.GetMinimumValue()
maxValue := rin.GetMaximumValue()
valueRange := maxValue - minValue
k := minValue + valueRange/2.0
start2 := time.Now()
// output the data
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = "blue_white_red.plt"
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = nodata
config.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config.EPSGCode = inConfig.EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config)
if err != nil {
println("Failed to write raster")
return
}
printf("\rPerforming analysis: %v%%\n", 0)
oldProgress = 0
for row = 0; row < rows; row++ {
y1 = row - this.neighbourhoodSize
y2 = row + this.neighbourhoodSize
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
x1 = col - this.neighbourhoodSize
x2 = col + this.neighbourhoodSize
n = 0
sum = 0.0
sumSqr = 0.0
for i = y1; i <= y2; i++ {
for j = x1; j <= x2; j++ {
zN = rin.Value(i, j)
if zN != nodata {
n++
sum += zN - k
sumSqr += (zN - k) * (zN - k)
}
}
}
if n > 2 {
v = (sumSqr - (sum*sum)/float64(n)) / float64(n) // eq. from Annabel Ness Evans page 92 //(sumOfTheSquares / n) - (average * average);
if v > 0 {
s = math.Sqrt(v)
m = sum / float64(n)
outValue = ((z - k) - m) / s
rout.SetValue(row, col, outValue)
} else {
rout.SetValue(row, col, 0.0)
}
} else {
rout.SetValue(row, col, 0.0)
}
// N = IN[y2][x2] + IN[y1][x1] - IN[y1][x2] - IN[y2][x1]
// if N > 0 {
// sum = I[y2][x2] + I[y1][x1] - I[y1][x2] - I[y2][x1]
// sumSqr = I2[y2][x2] + I2[y1][x1] - I2[y1][x2] - I2[y2][x1]
// v = (sumSqr - (sum*sum)/float64(N)) / float64(N)
// if v > 0 {
// s = math.Sqrt(v)
// m = sum / float64(N)
// outValue = ((z - k) - m) / s
// rout.SetValue(row, col, outValue)
// } else {
// rout.SetValue(row, col, 0)
// }
// } else {
// rout.SetValue(row, col, 0)
// }
}
}
progress = int(100.0 * row / rowsLessOne)
if progress%5 == 0 && progress != oldProgress {
printf("\rPerforming analysis: %v%%\n", progress)
oldProgress = progress
}
}
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by DeviationFromMeanTraditional tool"))
rout.AddMetadataEntry(fmt.Sprintf("Window size: %v", (this.neighbourhoodSize*2 + 1)))
config.DisplayMinimum = -2.58
config.DisplayMaximum = 2.58
rout.SetRasterConfig(config)
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}
func (this *ElevationPercentile) Run() {
start1 := time.Now()
var progress, oldProgress, col, row int
var i, j, bin, highResNumBins uint32
var z, percentile float64
var N, numLess, binRunningTotal uint32
var x1, x2, y1, y2 int
var a, b, c, d, e, f, g, rowSum []uint32
println("Reading raster data...")
rin, err := raster.CreateRasterFromFile(this.inputFile)
if err != nil {
println(err.Error())
}
start2 := time.Now()
rows := rin.Rows
columns := rin.Columns
rowsLessOne := rows - 1
nodata := rin.NoDataValue
inConfig := rin.GetRasterConfig()
minValue := rin.GetMinimumValue()
maxValue := rin.GetMaximumValue()
valueRange := math.Ceil(maxValue - minValue)
highResNumBins = 10000
highResBinSize := valueRange / float64(highResNumBins)
primaryHisto := make([]uint32, highResNumBins)
var numValidCells uint32 = 0
for row = 0; row < rows; row++ {
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
i = uint32(math.Floor((z - minValue) / highResBinSize))
// if i == this.numBins {
// i = this.numBins - 1
// }
if i >= highResNumBins {
i = highResNumBins - 1
}
primaryHisto[i]++
numValidCells++
}
}
}
quantileProportion := numValidCells / this.numBins
binNumMap := make([]uint32, highResNumBins)
binTotal := make([]uint32, this.numBins)
valProbMap := make([]float64, highResNumBins)
binRunningTotal = 0
bin = 0
for i = 0; i < highResNumBins; i++ {
binRunningTotal += primaryHisto[i]
if binRunningTotal > quantileProportion {
if bin < this.numBins-1 {
bin++
binRunningTotal = primaryHisto[i]
}
}
binNumMap[i] = bin
binTotal[bin] += primaryHisto[i]
valProbMap[i] = float64(binRunningTotal)
//primaryHisto[i] += primaryHisto[i-1]
}
for i = 0; i < highResNumBins; i++ {
valProbMap[i] = valProbMap[i] / float64(binTotal[binNumMap[i]])
}
// for i = 0; i < highResNumBins; i++ {
// primaryHisto[i] = uint32(math.Floor(cdf[i] / quantileProportion))
// if primaryHisto[i] == this.numBins {
// primaryHisto[i] = this.numBins - 1
// }
// }
// binLowerValue := make([]float64, this.numBins)
// binSize := make([]float64, this.numBins)
// for i = 0; i < this.numBins; i++ {
// binLowerValue[i] = minValue + float64(i)*binSize
// }
// bin = -1
// for i = 0; i < highResNumBins; i++ {
// if primaryHisto[i] > bin {
// bin = primaryHisto[i]
// // what elevation does this bin correpsond to?
// binLowerValue[bin] = minValue + float64(i)*highResBinSize
// if bin > 0 {
// binSize[bin-1] = (minValue + float64(i-1)*highResBinSize) - binLowerValue[bin-1]
// }
// }
// }
// binSize[this.numBins-1] = maxValue - binLowerValue[this.numBins-1]
// for i = 0; i < this.numBins; i++ {
// println(binLowerValue[i], binSize[i])
// }
histoImage := make([][][]uint32, rows)
oldProgress = -1
for row = 0; row < rows; row++ {
histoImage[row] = make([][]uint32, columns)
rowSum = make([]uint32, this.numBins)
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
//bin = int(math.Floor((z - minValue) / binSize))
i = uint32(math.Floor((z - minValue) / highResBinSize))
if i >= highResNumBins {
i = highResNumBins - 1
}
bin = binNumMap[i]
rowSum[bin]++
}
histoImage[row][col] = make([]uint32, this.numBins)
if row > 0 {
for i = 0; i < this.numBins; i++ {
histoImage[row][col][i] = rowSum[i] + histoImage[row-1][col][i]
}
} else {
for i = 0; i < this.numBins; i++ {
histoImage[row][col][i] = rowSum[i]
}
}
}
progress = int(100.0 * row / rowsLessOne)
if progress%5 == 0 && progress != oldProgress {
printf("Calculating integral histogram (1 of 2): %v%%\n", progress)
oldProgress = progress
}
}
// create the output raster
config := raster.NewDefaultRasterConfig()
config.PreferredPalette = "blue_white_red.plt"
config.DataType = raster.DT_FLOAT32
config.NoDataValue = nodata
config.InitialValue = nodata
config.CoordinateRefSystemWKT = inConfig.CoordinateRefSystemWKT
config.EPSGCode = inConfig.EPSGCode
rout, err := raster.CreateNewRaster(this.outputFile, rows, columns,
rin.North, rin.South, rin.East, rin.West, config)
if err != nil {
println("Failed to write raster")
return
}
e = make([]uint32, this.numBins)
f = make([]uint32, this.numBins)
g = make([]uint32, this.numBins)
oldProgress = -1
for row = 0; row < rows; row++ {
y1 = row - this.neighbourhoodSize
if y1 < 0 {
y1 = 0
}
if y1 >= rows {
y1 = rows - 1
}
y2 = row + this.neighbourhoodSize
if y2 < 0 {
y2 = 0
}
if y2 >= rows {
y2 = rows - 1
}
for col = 0; col < columns; col++ {
z = rin.Value(row, col)
if z != nodata {
//bin = int(math.Floor((z - minValue) / binSize))
j = uint32(math.Floor((z - minValue) / highResBinSize))
if j >= highResNumBins {
j = highResNumBins - 1
}
bin = binNumMap[j]
x1 = col - this.neighbourhoodSize
if x1 < 0 {
x1 = 0
}
if x1 >= columns {
x1 = columns - 1
}
x2 = col + this.neighbourhoodSize
if x2 < 0 {
x2 = 0
}
if x2 >= columns {
x2 = columns - 1
}
a = histoImage[y2][x2]
b = histoImage[y1][x1]
c = histoImage[y1][x2]
d = histoImage[y2][x1]
for i = 0; i < this.numBins; i++ {
e[i] = a[i] + b[i]
}
for i = 0; i < this.numBins; i++ {
f[i] = e[i] - c[i]
}
for i = 0; i < this.numBins; i++ {
g[i] = f[i] - d[i]
}
N = 0
numLess = 0
for i = 0; i < this.numBins; i++ {
N += g[i]
if i < bin {
numLess += g[i]
}
}
if N > 0 {
//percentile = 100.0 * float64(g[bin]) / float64(N) // only used for accuracy assessment
percentile = 100.0 * (float64(numLess) + valProbMap[j]*float64(g[bin])) / float64(N)
//percentile = 100.0 * (float64(numLess) + (z-binLowerValue[bin])/binSize[bin]*float64(g[bin])) / float64(N)
rout.SetValue(row, col, percentile)
}
}
}
progress = int(100.0 * row / rowsLessOne)
if progress%5 == 0 && progress != oldProgress {
printf("Performing analysis (2 of 2): %v%%\n", progress)
oldProgress = progress
}
}
println("Saving data...")
elapsed := time.Since(start2)
rout.AddMetadataEntry(fmt.Sprintf("Created on %s", time.Now().Local()))
rout.AddMetadataEntry(fmt.Sprintf("Elapsed Time: %v", elapsed))
rout.AddMetadataEntry(fmt.Sprintf("Created by ElevationPercentile tool"))
rout.AddMetadataEntry(fmt.Sprintf("Window size: %v", (this.neighbourhoodSize*2 + 1)))
rout.AddMetadataEntry(fmt.Sprintf("Num. histogram bins: %v", this.numBins))
config.DisplayMinimum = 0
config.DisplayMaximum = 100
rout.SetRasterConfig(config)
rout.Save()
println("Operation complete!")
value := fmt.Sprintf("Elapsed time (excluding file I/O): %s", elapsed)
println(value)
overallTime := time.Since(start1)
value = fmt.Sprintf("Elapsed time (total): %s", overallTime)
println(value)
}