Example #1
0
// String returns a string representation of the sequence data only.
func (s *QSeq) String() string {
	cs := make([]alphabet.Letter, 0, len(s.Seq))
	for _, ql := range s.Seq {
		cs = append(cs, s.QFilter(s.Alpha, s.Threshold, ql))
	}

	return alphabet.Letters(cs).String()
}
Example #2
0
// NewSeq creates a new Seq with the given id, letter sequence and alphabet.
func NewSeq(id string, b []alphabet.Letter, alpha alphabet.Alphabet) *Seq {
	return &Seq{
		Annotation: seq.Annotation{
			ID:     id,
			Alpha:  alpha,
			Strand: seq.Plus,
		},
		Seq: append(alphabet.Letters(nil), b...),
	}
}
Example #3
0
// String returns a string representation of the sequence data only.
func (s *Seq) String() string { return alphabet.Letters(s.Seq).String() }