Exemplo n.º 1
0
func makeCyBio() *liquidhandling.LHProperties {
	tips := GetTipList()
	layout := make(map[string]wtype.Coordinates)
	for i := 0; i < 12; i++ {
		posname := fmt.Sprintf("position_%d", i+1)
		// dont know coords for this yet
		var crds wtype.Coordinates
		layout[posname] = crds
	}

	lhp := liquidhandling.NewLHProperties(12, "Felix", "CyBio", "discrete", "disposable", layout)

	for _, tt := range tips {
		tb := GetTipByType(tt)
		if tb.Mnfr == lhp.Mnfr {
			lhp.Tips = append(lhp.Tips, tb.Tips[0][0])
		}
	}

	lhp.Tip_preferences = []int{1, 5, 3}
	lhp.Input_preferences = []int{10, 11, 12}
	lhp.Output_preferences = []int{7, 8, 9, 2, 4}

	minvol := wunit.NewVolume(10, "ul")
	maxvol := wunit.NewVolume(1000, "ul")
	minspd := wunit.NewFlowRate(0.5, "ml/min")
	maxspd := wunit.NewFlowRate(2, "ml/min")

	hvconfig := wtype.NewLHChannelParameter("HVconfig", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)

	hvadaptor := wtype.NewLHAdaptor("HVAdaptor", "CyBio", hvconfig)

	minvol = wunit.NewVolume(0.5, "ul")
	maxvol = wunit.NewVolume(50, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	lvconfig := wtype.NewLHChannelParameter("LVconfig", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
	lvadaptor := wtype.NewLHAdaptor("LVAdaptor", "CyBio", lvconfig)

	minvol = wunit.NewVolume(0.5, "ul")
	maxvol = wunit.NewVolume(1000, "ul")
	headparams := wtype.NewLHChannelParameter("ChoiceHead", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
	head := wtype.NewLHHead("ChoiceHead", "CyBio", headparams)
	head.Adaptor = hvadaptor

	lhp.Adaptors = append(lhp.Adaptors, hvadaptor)
	lhp.Adaptors = append(lhp.Adaptors, lvadaptor)
	lhp.Heads = append(lhp.Heads, head)
	lhp.HeadsLoaded = append(lhp.HeadsLoaded, head)

	return lhp
}
func makeManual() *liquidhandling.LHProperties {
	//	tips := GetTipList()

	// dummy layout of 25 positions... arbitrary limitation

	x := 0.0
	y := 0.0
	z := 0.0
	xinc := 100.0
	yinc := 100.0

	i := 0
	layout := make(map[string]wtype.Coordinates)
	for xi := 0; xi < 5; xi++ {
		for yi := 0; yi < 5; yi++ {
			posname := fmt.Sprintf("position_%d", i+1)
			crds := wtype.Coordinates{x, y, z}
			layout[posname] = crds
			i += 1
			y += yinc
		}
		x += xinc
	}
	lhp := liquidhandling.NewLHProperties(25, "Human", "MotherNature", "discrete", "disposable", layout)

	SetUpTipsFor(lhp)

	lhp.Tip_preferences = []string{"tips1", "tips2", "tips3", "tips4"}
	lhp.Input_preferences = []string{"in1", "in2", "in3", "in4"}
	lhp.Output_preferences = []string{"out1", "out2", "out3", "out4"}
	lhp.Tipwaste_preferences = []string{"tip_waste"}
	lhp.Wash_preferences = []string{"tip_wash"}
	lhp.Waste_preferences = []string{"liquid_waste"}

	adaptors := make([]*wtype.LHAdaptor, 0, 1)

	minvol := wunit.NewVolume(200, "ul")
	maxvol := wunit.NewVolume(1000, "ul")
	minspd := wunit.NewFlowRate(0.5, "ml/min")
	maxspd := wunit.NewFlowRate(2, "ml/min")

	hvconfig := wtype.NewLHChannelParameter("P1000Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
	hvadaptor := wtype.NewLHAdaptor("P1000", "Gilson", hvconfig)

	adaptors = append(adaptors, hvadaptor)

	minvol = wunit.NewVolume(50, "ul")
	maxvol = wunit.NewVolume(200, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	mvconfig := wtype.NewLHChannelParameter("P200Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
	mvadaptor := wtype.NewLHAdaptor("P200", "Gilson", mvconfig)

	adaptors = append(adaptors, mvadaptor)

	minvol = wunit.NewVolume(2, "ul")
	maxvol = wunit.NewVolume(20, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	lmvconfig := wtype.NewLHChannelParameter("P20Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
	lmvadaptor := wtype.NewLHAdaptor("P20", "Gilson", lmvconfig)
	adaptors = append(adaptors, lmvadaptor)

	minvol = wunit.NewVolume(1, "ul")
	maxvol = wunit.NewVolume(10, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	lvconfig := wtype.NewLHChannelParameter("P10Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
	lvadaptor := wtype.NewLHAdaptor("P10", "Gilson", lvconfig)
	adaptors = append(adaptors, lvadaptor)

	minvol = wunit.NewVolume(0.2, "ul")
	maxvol = wunit.NewVolume(2, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	vlvconfig := wtype.NewLHChannelParameter("P2Config", "Gilson", minvol, maxvol, minspd, maxspd, 1, false, wtype.LHVChannel, 0)
	vlvadaptor := wtype.NewLHAdaptor("P2", "Gilson", vlvconfig)
	adaptors = append(adaptors, vlvadaptor)

	//minvol = wunit.NewVolume(0.2, "ul")
	//maxvol = wunit.NewVolume(5000, "ul")
	for i, adaptor := range adaptors {
		maxvol = adaptor.Params.Maxvol
		minvol = adaptor.Params.Minvol
		maxspd = adaptor.Params.Maxspd
		minspd = adaptor.Params.Minspd
		headparams := wtype.NewLHChannelParameter(fmt.Sprintf("LabHand_%d", i+1), "MotherNature", minvol, maxvol, minspd, maxspd, 8, false, wtype.LHVChannel, 0)
		head := wtype.NewLHHead(fmt.Sprintf("LabHand_%d", i+1), "MotherNature", headparams)
		head.Adaptor = adaptor
		lhp.Heads = append(lhp.Heads, head)
		lhp.HeadsLoaded = append(lhp.HeadsLoaded, head)
	}
	//	lhp.Adaptors = append(lhp.Adaptors, hvadaptor)
	//	lhp.Adaptors = append(lhp.Adaptors, mvadaptor)
	//	lhp.Adaptors = append(lhp.Adaptors, lmvadaptor)
	//	lhp.Adaptors = append(lhp.Adaptors, lvadaptor)
	//	lhp.Adaptors = append(lhp.Adaptors, vlvadaptor)
	return lhp
}
Exemplo n.º 3
0
func makeManual() *liquidhandling.LHProperties {
	//	tips := GetTipList()

	// dummy layout of 25 positions... arbitrary limitation

	x := 0.0
	y := 0.0
	z := 0.0
	xinc := 100.0
	yinc := 100.0

	i := 0
	layout := make(map[string]wtype.Coordinates)
	for xi := 0; xi < 5; xi++ {
		for yi := 0; yi < 5; yi++ {
			posname := fmt.Sprintf("position_%d", i+1)
			crds := wtype.Coordinates{x, y, z}
			layout[posname] = crds
			i += 1
			y += yinc
		}
		x += xinc
	}
	lhp := liquidhandling.NewLHProperties(25, "Human", "MotherNature", "discrete", "disposable", layout)

	lhp.Tip_preferences = []int{2, 3, 4, 5, 6}
	lhp.Input_preferences = []int{7, 8, 9, 10, 11, 12, 13, 14, 15}
	lhp.Output_preferences = []int{16, 17, 18, 19, 20, 21, 22, 23, 24, 25}

	minvol := wunit.NewVolume(200, "ul")
	maxvol := wunit.NewVolume(1000, "ul")
	minspd := wunit.NewFlowRate(0.5, "ml/min")
	maxspd := wunit.NewFlowRate(2, "ml/min")

	hvconfig := wtype.NewLHChannelParameter("P1000Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
	hvadaptor := wtype.NewLHAdaptor("P1000", "Gilson", hvconfig)

	minvol = wunit.NewVolume(50, "ul")
	maxvol = wunit.NewVolume(200, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	mvconfig := wtype.NewLHChannelParameter("P200Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
	mvadaptor := wtype.NewLHAdaptor("P200", "Gilson", mvconfig)

	minvol = wunit.NewVolume(2, "ul")
	maxvol = wunit.NewVolume(20, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	lmvconfig := wtype.NewLHChannelParameter("P20Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
	lmvadaptor := wtype.NewLHAdaptor("P20", "Gilson", lmvconfig)

	minvol = wunit.NewVolume(1, "ul")
	maxvol = wunit.NewVolume(10, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	lvconfig := wtype.NewLHChannelParameter("P10Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
	lvadaptor := wtype.NewLHAdaptor("P10", "Gilson", lvconfig)

	minvol = wunit.NewVolume(0.2, "ul")
	maxvol = wunit.NewVolume(2, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	vlvconfig := wtype.NewLHChannelParameter("P2Config", &minvol, &maxvol, &minspd, &maxspd, 1, false, wtype.LHVChannel, 0)
	vlvadaptor := wtype.NewLHAdaptor("P2", "Gilson", vlvconfig)

	minvol = wunit.NewVolume(0.2, "ul")
	maxvol = wunit.NewVolume(5000, "ul")
	headparams := wtype.NewLHChannelParameter("LabHand", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
	head := wtype.NewLHHead("LabHand", "MotherNature", headparams)
	head.Adaptor = hvadaptor

	lhp.Adaptors = append(lhp.Adaptors, hvadaptor)
	lhp.Adaptors = append(lhp.Adaptors, mvadaptor)
	lhp.Adaptors = append(lhp.Adaptors, lmvadaptor)
	lhp.Adaptors = append(lhp.Adaptors, lvadaptor)
	lhp.Adaptors = append(lhp.Adaptors, vlvadaptor)
	lhp.Heads = append(lhp.Heads, head)
	lhp.HeadsLoaded = append(lhp.HeadsLoaded, head)
	return lhp
}
Exemplo n.º 4
0
func makeGilson() *liquidhandling.LHProperties {
	// gilson pipetmax
	tips := GetTipList()

	layout := make(map[string]wtype.Coordinates)
	i := 0
	x0 := 3.886
	y0 := 3.513
	z0 := -82.035
	xi := 149.86
	yi := 95.25
	xp := x0
	yp := y0
	zp := z0
	for y := 0; y < 3; y++ {
		for x := 0; x < 3; x++ {
			posname := fmt.Sprintf("position_%d", i+1)
			crds := wtype.Coordinates{xp, yp, zp}
			layout[posname] = crds
			i += 1
			xp += xi
		}
		yp += yi
	}
	lhp := liquidhandling.NewLHProperties(9, "Pipetmax", "Gilson", "discrete", "disposable", layout)

	for _, tt := range tips {
		tb := GetTipByType(tt)
		if tb.Mnfr == lhp.Mnfr {
			lhp.Tips = append(lhp.Tips, tb.Tips[0][0])
		}
	}

	lhp.Tip_preferences = []int{2, 3, 4}
	lhp.Input_preferences = []int{4, 5, 6}
	lhp.Output_preferences = []int{7, 8, 9}
	minvol := wunit.NewVolume(10, "ul")
	maxvol := wunit.NewVolume(250, "ul")
	minspd := wunit.NewFlowRate(0.5, "ml/min")
	maxspd := wunit.NewFlowRate(2, "ml/min")

	hvconfig := wtype.NewLHChannelParameter("HVconfig", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 0)
	hvadaptor := wtype.NewLHAdaptor("DummyAdaptor", "Gilson", hvconfig)
	hvhead := wtype.NewLHHead("HVHead", "Gilson", hvconfig)
	hvhead.Adaptor = hvadaptor

	minvol = wunit.NewVolume(0.5, "ul")
	maxvol = wunit.NewVolume(50, "ul")
	minspd = wunit.NewFlowRate(0.1, "ml/min")
	maxspd = wunit.NewFlowRate(0.5, "ml/min")

	lvconfig := wtype.NewLHChannelParameter("LVconfig", &minvol, &maxvol, &minspd, &maxspd, 8, false, wtype.LHVChannel, 1)
	lvadaptor := wtype.NewLHAdaptor("DummyAdaptor", "Gilson", lvconfig)
	lvhead := wtype.NewLHHead("LVHead", "Gilson", lvconfig)
	lvhead.Adaptor = lvadaptor

	lhp.Heads = append(lhp.Heads, hvhead)
	lhp.Heads = append(lhp.Heads, lvhead)
	lhp.HeadsLoaded = append(lhp.HeadsLoaded, hvhead)
	lhp.HeadsLoaded = append(lhp.HeadsLoaded, lvhead)
	return lhp
}