func (db PDBDatabase) HHsuite() hhsuite.Database {
resolved := hhsuite.Database(db).Resolve()
dbName := path.Base(resolved)
return hhsuite.Database(path.Join(resolved, dbName))
}
func (db PDBDatabase) PDB() string {
resolved := hhsuite.Database(db).Resolve()
return path.Join(resolved, "pdb")
}
"When set, a CPU profile will be written to the file provided.")
},
},
"pdb-dir": {
set: func() {
flag.StringVar(&FlagPdbDir, "pdb-dir", FlagPdbDir,
"The path to the directory containing the PDB database.")
},
},
"seq-db": {
set: func() {
flag.StringVar(&flagSeqDB, "seq-db", flagSeqDB,
"The sequence database used to generate the query HHM.")
},
init: func() {
FlagSeqDB = hhsuite.Database(flagSeqDB)
},
},
"pdb-hhm-db": {
set: func() {
flag.StringVar(&flagPdbHhmDB, "pdb-hhm-db", flagPdbHhmDB,
"The PDB/HHM database used to assign fragments.")
},
init: func() {
FlagPdbHhmDB = hhfrag.PDBDatabase(flagPdbHhmDB)
},
},
"blits": {
set: func() {
flag.BoolVar(&HHfragConf.Blits, "blits", HHfragConf.Blits,
"When set, hhblits will be used in lieu of hhsearch.")