Example #1
0
func vectorDistance(vec1, vec2 *mat.Vector) (v float64) {
	result := mat.NewVector(vec1.Len(), nil)

	result.SubVec(vec1, vec2)
	result.MulElemVec(result, result)
	v = mat.Sum(result)

	return
}
Example #2
0
// Scatter copies the values of x into the corresponding locations in the dense
// vector y. Both vectors must have the same dimension.
func Scatter(y *mat64.Vector, x *Vector) {
	if x.N != y.Len() {
		panic("sparse: vector dimension mismatch")
	}

	raw := y.RawVector()
	for i, index := range x.Indices {
		raw.Data[index*raw.Inc] = x.Data[i]
	}
}
Example #3
0
// Dot computes the dot product of the sparse vector x with the dense vector y.
// The vectors must have the same dimension.
func Dot(x *Vector, y *mat64.Vector) (dot float64) {
	if x.N != y.Len() {
		panic("sparse: vector dimension mismatch")
	}

	raw := y.RawVector()
	for i, index := range x.Indices {
		dot += x.Data[i] * raw.Data[index*raw.Inc]
	}
	return
}
Example #4
0
// findIn returns the indexes of the values in vec that match scalar
func findIn(scalar float64, vec *mat.Vector) *mat.Vector {
	var result []float64

	for i := 0; i < vec.Len(); i++ {
		if scalar == vec.At(i, 0) {
			result = append(result, float64(i))
		}
	}

	return mat.NewVector(len(result), result)
}
Example #5
0
// Gather gathers entries given by indices of the dense vector y into the sparse
// vector x. Indices must not be nil.
func Gather(x *Vector, y *mat64.Vector, indices []int) {
	if indices == nil {
		panic("sparse: slice is nil")
	}

	x.reuseAs(y.Len(), len(indices))
	copy(x.Indices, indices)
	raw := y.RawVector()
	for i, index := range x.Indices {
		x.Data[i] = raw.Data[index*raw.Inc]
	}
}
Example #6
0
// Axpy scales the sparse vector x by alpha and adds the result to the dense
// vector y. If alpha is zero, y is not modified.
func Axpy(y *mat64.Vector, alpha float64, x *Vector) {
	if x.N != y.Len() {
		panic("sparse: vector dimension mismatch")
	}

	if alpha == 0 {
		return
	}
	raw := y.RawVector()
	for i, index := range x.Indices {
		raw.Data[index*raw.Inc] += alpha * x.Data[i]
	}
}
Example #7
0
func dokMulMatVec(y *mat64.Vector, alpha float64, transA bool, a *DOK, x *mat64.Vector) {
	r, c := a.Dims()
	if transA {
		if r != x.Len() || c != y.Len() {
			panic("sparse: dimension mismatch")
		}
	} else {
		if r != y.Len() || c != x.Len() {
			panic("sparse: dimension mismatch")
		}
	}

	if alpha == 0 {
		return
	}

	xRaw := x.RawVector()
	yRaw := y.RawVector()
	if transA {
		for ij, aij := range a.data {
			yRaw.Data[ij[1]*yRaw.Inc] += alpha * aij * xRaw.Data[ij[0]*xRaw.Inc]
		}
	} else {
		for ij, aij := range a.data {
			yRaw.Data[ij[0]*yRaw.Inc] += alpha * aij * xRaw.Data[ij[1]*xRaw.Inc]
		}
	}
}
Example #8
0
// rowIndexIn returns a matrix contains the rows in indexes vector
func rowIndexIn(indexes *mat.Vector, M mat.Matrix) mat.Matrix {
	m := indexes.Len()
	_, n := M.Dims()
	Res := mat.NewDense(m, n, nil)

	for i := 0; i < m; i++ {
		Res.SetRow(i, mat.Row(
			nil,
			int(indexes.At(i, 0)),
			M))
	}

	return Res
}
Example #9
0
func Solve(a sparse.Matrix, b, xInit *mat64.Vector, settings *Settings, method Method) (result Result, err error) {
	stats := Stats{
		StartTime: time.Now(),
	}

	dim, c := a.Dims()
	if dim != c {
		panic("iterative: matrix is not square")
	}
	if xInit != nil && dim != xInit.Len() {
		panic("iterative: mismatched size of the initial guess")
	}
	if b.Len() != dim {
		panic("iterative: mismatched size of the right-hand side vector")
	}

	if xInit == nil {
		xInit = mat64.NewVector(dim, nil)
	}
	if settings == nil {
		settings = DefaultSettings(dim)
	}

	ctx := Context{
		X:        mat64.NewVector(dim, nil),
		Residual: mat64.NewVector(dim, nil),
	}
	// X = xInit
	ctx.X.CopyVec(xInit)
	if mat64.Norm(ctx.X, math.Inf(1)) > 0 {
		// Residual = Ax
		sparse.MulMatVec(ctx.Residual, 1, false, a, ctx.X)
		stats.MatVecMultiplies++
	}
	// Residual = Ax - b
	ctx.Residual.SubVec(ctx.Residual, b)

	if mat64.Norm(ctx.Residual, 2) >= settings.Tolerance {
		err = iterate(method, a, b, settings, &ctx, &stats)
	}

	result = Result{
		X:       ctx.X,
		Stats:   stats,
		Runtime: time.Since(stats.StartTime),
	}
	return result, err
}
Example #10
0
func csrMulMatVec(y *mat64.Vector, alpha float64, transA bool, a *CSR, x *mat64.Vector) {
	r, c := a.Dims()
	if transA {
		if r != x.Len() || c != y.Len() {
			panic("sparse: dimension mismatch")
		}
	} else {
		if r != y.Len() || c != x.Len() {
			panic("sparse: dimension mismatch")
		}
	}

	if alpha == 0 {
		return
	}

	yRaw := y.RawVector()
	if transA {
		row := Vector{N: y.Len()}
		for i := 0; i < r; i++ {
			start := a.rowIndex[i]
			end := a.rowIndex[i+1]
			row.Data = a.values[start:end]
			row.Indices = a.columns[start:end]
			Axpy(y, alpha*x.At(i, 0), &row)
		}
	} else {
		row := Vector{N: x.Len()}
		for i := 0; i < r; i++ {
			start := a.rowIndex[i]
			end := a.rowIndex[i+1]
			row.Data = a.values[start:end]
			row.Indices = a.columns[start:end]
			yRaw.Data[i*yRaw.Inc] += alpha * Dot(&row, x)
		}
	}
}